mRNA_L-elsbetiae_contig584.14288.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig584.14288.1
Unique NamemRNA_L-elsbetiae_contig584.14288.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig584.14288.1 vs. uniprot
Match: D8LU32_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU32_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 5.240e-25
Identity = 63/140 (45.00%), Postives = 86/140 (61.43%), Query Frame = 3 
Query:    9 LGRMFVVALVMRRLLELNPQRQAFFLVETDAQINRVFGQLRKEMGWAGSMSTMTVDTIALPSSRRSGRPGKGKGGSMGDALEIRRKLASVRATSVVVATACAFEHTLHQRYIDPDAICCVVIDEAHHSGKEHPFFRISKS 428
            LG+  V A+V++++L+ NP+RQA+FLVET A   +   +L+ E+G       M V +             +  GG  G       KL  VR  ++VVATA AFEH + +RYIDPDAICCVV+DEAHH GKEHPF R+++S
Sbjct:  254 LGKTLVAAMVLKQMLDWNPERQAYFLVETTALAMQQTTRLQNELGGTVKKIEMLVGSSL-----------QAFGGKRGKIDHGLVKLECVRDANIVVATAGAFEHCMCKRYIDPDAICCVVLDEAHHCGKEHPFNRVARS 382
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BLAST of mRNA_L-elsbetiae_contig584.14288.1 vs. uniprot
Match: UPI000F54D33C (uncharacterized protein LOC113687008 isoform X2 n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F54D33C)

HSP 1 Score: 53.5 bits (127), Expect = 4.070e-5
Identity = 44/144 (30.56%), Postives = 68/144 (47.22%), Query Frame = 3 
Query:   12 GRMFVVALVMRRLLELNPQRQAFFLVETDAQINRVFGQLRKEMGWAGSMSTMTVDTIALPSSRRSGRPGKGKGGSMGDALEIRRKLASVRA--TSVVVATACAFEHTLHQRYIDPDAICCVVIDEAHHSGKEHPFFRISKSPYV 437
            G+  V A V+  +L+LNP RQ  FLV+    + +    LRKE+G          D      S RS R G   G       E+R+   + R     V++ TA  + + L+   +  D +  +V+DEAHH  K+HP+  I +  Y+
Sbjct:  507 GKTLVAAQVIAHMLKLNPSRQVVFLVDRVLLVLQQSDYLRKELG-----HIRVADERGSFESTRSIRIGAVCG-------EMRKLEGNARIYEQDVLIITADCYRNHLNNGTLRFDDVSLIVLDEAHHCNKDHPYNVIIRDFYL 638
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig584.14288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU32_ECTSI5.240e-2545.00DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
UPI000F54D33C4.070e-530.56uncharacterized protein LOC113687008 isoform X2 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig584contigL-elsbetiae_contig584:5264..7032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue3.8e-21
Seed eggNOG ortholog2880.D8LU32
KEGG koko:K11592
KEGG Pathwayko05206,map05206
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ribonuclease III activity
EggNOG OGsCOG0571@1,KOG0701@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons3
Model size528
Cds size510
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig584.14288.1prot_L-elsbetiae_contig584.14288.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig584 5264..7015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816629.22805-CDS-L-elsbetiae_contig584:5263..54551622816629.22805-CDS-L-elsbetiae_contig584:5263..5455Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig584 5264..5455 -
1691683696.9803262-CDS-L-elsbetiae_contig584:5263..54551691683696.9803262-CDS-L-elsbetiae_contig584:5263..5455Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig584 5264..5455 -
1622816629.2405686-CDS-L-elsbetiae_contig584:5769..59881622816629.2405686-CDS-L-elsbetiae_contig584:5769..5988Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig584 5770..5988 -
1691683696.9969933-CDS-L-elsbetiae_contig584:5769..59881691683696.9969933-CDS-L-elsbetiae_contig584:5769..5988Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig584 5770..5988 -
1622816629.2519522-CDS-L-elsbetiae_contig584:6916..70151622816629.2519522-CDS-L-elsbetiae_contig584:6916..7015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig584 6917..7015 -
1691683697.0085347-CDS-L-elsbetiae_contig584:6916..70151691683697.0085347-CDS-L-elsbetiae_contig584:6916..7015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig584 6917..7015 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816629.2623193-UTR-L-elsbetiae_contig584:7015..70321622816629.2623193-UTR-L-elsbetiae_contig584:7015..7032Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig584 7016..7032 -
1691683697.018446-UTR-L-elsbetiae_contig584:7015..70321691683697.018446-UTR-L-elsbetiae_contig584:7015..7032Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig584 7016..7032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig584.14288.1

>prot_L-elsbetiae_contig584.14288.1 ID=prot_L-elsbetiae_contig584.14288.1|Name=mRNA_L-elsbetiae_contig584.14288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
MFVVALVMRRLLELNPQRQAFFLVETDAQINRVFGQLRKEMGWAGSMSTM
TVDTIALPSSRRSGRPGKGKGGSMGDALEIRRKLASVRATSVVVATACAF
EHTLHQRYIDPDAICCVVIDEAHHSGKEHPFFRISKSPYVVPNDEATAVM
AARSRKEEEREKDNRNRNSR
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mRNA from alignment at L-elsbetiae_contig584:5264..7032-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig584.14288.1 ID=mRNA_L-elsbetiae_contig584.14288.1|Name=mRNA_L-elsbetiae_contig584.14288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1769bp|location=Sequence derived from alignment at L-elsbetiae_contig584:5264..7032- (Laminarionema elsbetiae ELsaHSoW15)
GGAAGCGGCTGGGGAGGATGTTTGTGGTGGCCCTGGTGATGCGGCGCCTC
CTAGAGCTGAACCCGCAGCGGCAGGCTTTCTTCCTGGTCGAGACGGACGC
GCAGATCAACAGGGTGGTAAGAACAAGATACATATGACAAAGTGGTACAT
ATACATACATGATATAGCCTAAATAGGAAAAGAAGAAGGCCGAGTTTTGC
AGAGCTGTGGGGAGGGGGGGCCGGCGGTGCGGTCATACTGTTTCTGCATT
GCTATATCGTCGCCAACCCGCCAACCACCAATCGGATCGTCGCCTTTACT
TCGATTACCCAGGAGGGGAGGAGGGCGACTAGACCGCGTTCTATCCTCCA
TCTACCCTGGATCTTCCGTGCTCTGTGATGCGTGTATGGATGCGTGTCGC
CTGTCCAAAACCCTCAGTACACTCACACAGTACAATAGCTGAATCACATC
GACAGACTGTAGGTGCATAATGGAGTTTTTCGTCCGTCATCAACATATCT
ACCTGGTGCAATATTTCTCCTTCTCTTACCGTTCGTGGCCGGACAGGCGA
GTTTTCCCCTCCACCCGTGCCGTAATTCCATTAACGTTTCAGACCGTCCT
TGTGCTCACCCCCCCCCCCCCCCCCCCCCCCCCCGGCCCGGGGGCCACCC
CCCCCAACGATGTGGGTCGGGAGGAGGCGGGGGGGGGGGGGAGGGGGGGT
GGAGGGGGGGGNNNNNNNNNNGCCGGCACGGCCATTTTTCCCCCCCCCCC
CGGCCCGAATTCCATTAACTTTTCCGCCCGGCCTTGTGCCCCCCCCCCCC
CCCCCCCCCCGGGAGTAAGGACGGTGTTCCAATCTCGAAAGGTTTCGTAG
TCAATGATGCAATGACGGCAAGGCTAGCGGTGCAATGACGGCAAGGCTAG
CGCTACTCCCACTAGCGACCACGAGTCCCCCCACCCCGTTCCTTTTTCAC
GAACCCCCCTCTTTTGTGGCACTCCCTGCTTGTTGCATTCATGCAACACT
CCCTCCCTCTCCTCTTCGTTCATGTCCTTATTTCCCTCCCTCAGTTTGGG
CAGCTGAGAAAGGAGATGGGATGGGCCGGCAGCATGTCGACGATGACGGT
GGACACGATAGCACTGCCCAGTTCGAGACGCTCGGGTCGCCCGGGCAAAG
GCAAAGGCGGGAGCATGGGCGACGCCTTGGAGATACGGCGGAAGCTGGCG
AGCGTGCGCGCGACGAGCGTGGTCGTGGCCACCGCGTGCGCCTTCGAGCA
CACCCTGCACCAGGTGAGGGAAAAGAAAACGAGCTAACCGGCTAGCTACA
GAGAACTGAACTGAACTGAACTGAACTAGACATGGCAGGACGACGAGTCT
AAGCCGATCCGACGGGCTGATCGAAACAAGTATCGTATCCTTCCAACGCC
CGAGGAAAATGAATGCGGTCGAGTCTCGCCGGGAGTTAGCACCGGGGCGG
GGGCGGGGGCGGGGACGGGCGGACGTCCTGTGTTAGCCTGCTGTAGTGAT
ACCAGCACCAACCAAGAAACAAAATATTCTGCTGGCTGTAGTCTAATCGC
ACACATTCATATCGTACCATGCCACAGCGGTATATCGACCCGGACGCCAT
CTGCTGCGTGGTCATAGACGAGGCGCACCACAGCGGCAAGGAGCACCCGT
TCTTCAGGATCTCCAAATCCCCGTACGTCGTGCCCAACGACGAGGCCACG
GCCGTCATGGCGGCCCGCAGCAGGAAGGAGGAAGAGAGGGAGAAGGATAA
CAGGAACAGGAACAGCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig584:5264..7032-

>mRNA_L-elsbetiae_contig584.14288.1 ID=mRNA_L-elsbetiae_contig584.14288.1|Name=mRNA_L-elsbetiae_contig584.14288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig584:5264..7032- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTGTGGTGGCCCTGGTGATGCGGCGCCTCCTAGAGCTGAACCCGCA
GCGGCAGGCTTTCTTCCTGGTCGAGACGGACGCGCAGATCAACAGGGTGA
TGTTTGTGGTGGCCCTGGTGATGCGGCGCCTCCTAGAGCTGAACCCGCAG
CGGCAGGCTTTCTTCCTGGTCGAGACGGACGCGCAGATCAACAGGGTGTT
TGGGCAGCTGAGAAAGGAGATGGGATGGGCCGGCAGCATGTCGACGATGA
CGGTGGACACGATAGCACTGCCCAGTTCGAGACGCTCGGGTCGCCCGGGC
AAAGGCAAAGGCGGGAGCATGGGCGACGCCTTGGAGATACGGCGGAAGCT
GGCGAGCGTGCGCGCGACGAGCGTGGTCGTGGCCACCGCGTGCGCCTTCG
AGCACACCCTGCACCAGTTTGGGCAGCTGAGAAAGGAGATGGGATGGGCC
GGCAGCATGTCGACGATGACGGTGGACACGATAGCACTGCCCAGTTCGAG
ACGCTCGGGTCGCCCGGGCAAAGGCAAAGGCGGGAGCATGGGCGACGCCT
TGGAGATACGGCGGAAGCTGGCGAGCGTGCGCGCGACGAGCGTGGTCGTG
GCCACCGCGTGCGCCTTCGAGCACACCCTGCACCAGCGGTATATCGACCC
GGACGCCATCTGCTGCGTGGTCATAGACGAGGCGCACCACAGCGGCAAGG
AGCACCCGTTCTTCAGGATCTCCAAATCCCCGTACGTCGTGCCCAACGAC
GAGGCCACGGCCGTCATGGCGGCCCGCAGCAGGAAGGAGGAAGAGAGGGA
GAAGGATAACAGGAACAGGAACAGCAGGCGGTATATCGACCCGGACGCCA
TCTGCTGCGTGGTCATAGACGAGGCGCACCACAGCGGCAAGGAGCACCCG
TTCTTCAGGATCTCCAAATCCCCGTACGTCGTGCCCAACGACGAGGCCAC
GGCCGTCATGGCGGCCCGCAGCAGGAAGGAGGAAGAGAGGGAGAAGGATA
ACAGGAACAGGAACAGCAGG
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