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Homology
BLAST of mRNA_L-elsbetiae_contig5839.14286.1 vs. uniprot
Match: D7G5H1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5H1_ECTSI) HSP 1 Score: 160 bits (406), Expect = 1.360e-41 Identity = 113/259 (43.63%), Postives = 146/259 (56.37%), Query Frame = 1
Query: 16 RRGLQLLSEGDTVVNGVLNLYTAEGVAACEASCNGAFAEAFGVSDASIGCVCPEEEDATGR-RRRNL------------GESVAGRENNRSLRG-----LTALDTPAAAAFTARISGGLDGGAAALEFLSAFGPSALASSFGVEESELEVTTLTVTPPPSGDASETLTVITNFFDASDIPILAPSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVVLGLLWK---NGGGPLAKAANFK-----RDSFRMHPQVT 714
RR LQ+L++G+TV+NGVLNL+T EGVAACE SC AFA AFG+ + S+GCVCP A+ RRRNL E G + RSLR L D+ AF+AR++GGL GGAAAL+ LS G SA+AS+FGV+E ELE++TLTVTPP S +++ETL VIT++FDASDI I++ + + LLWK +GGG + FK R+SFR Q T
Sbjct: 32 RRSLQVLTDGETVLNGVLNLFTEEGVAACEGSCKDAFATAFGIDEVSVGCVCPISTSASDADRRRNLMGDNSKQPTSDSAEQNKGSSDRRSLRAQRRRWLAETDSSEPVAFSARVAGGLAGGAAALDLLSESGWSAVASAFGVDEDELEISTLTVTPPASTNSTETLEVITDYFDASDISIVSSLSTTEGTDWAGGGRGVALFLAMFVLLLMTFCCCGFLAGLLLWKAKKHGGGAVGGEKFFKSHLPERNSFRWGGQPT 290
BLAST of mRNA_L-elsbetiae_contig5839.14286.1 vs. uniprot
Match: A0A6H5KUU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU0_9PHAE) HSP 1 Score: 161 bits (408), Expect = 3.770e-41 Identity = 113/258 (43.80%), Postives = 147/258 (56.98%), Query Frame = 1
Query: 16 RRGLQLLSEGDTVVNGVLNLYTAEGVAACEASCNGAFAEAFGVSDASIGCVCPEEEDATGR-RRRNL-----------GESVAGRENNRSLRG-----LTALDTPAAAAFTARISGGLDGGAAALEFLSAFGPSALASSFGVEESELEVTTLTVTPPPSGDASETLTVITNFFDASDIPILAPSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVVLGLLWK---NGGGPLAKAANFK-----RDSFRMHPQVT 714
RR LQ+L++G+TV+NGVLNL+T EGVAACE SC GAFA AFG+ + S+GCVCP A+ RRRNL E G + RSLRG L ++ AF+AR++GGL GGAAAL LS G SA+AS+FGV+E ELE++TLTVTPP S ++++TL VIT++FDASDI I++ + + LLWK +GGG + FK R+SFR Q T
Sbjct: 32 RRSLQVLTDGETVLNGVLNLFTEEGVAACEGSCKGAFATAFGIDEVSVGCVCPMTTSASDADRRRNLMGDDKQPTSDSAEQNNGSSDRRSLRGQRRRWLAETNSSEPVAFSARVAGGLAGGAAALNLLSDSGWSAVASAFGVDEDELEISTLTVTPPASTNSTDTLEVITDYFDASDISIVSSLSTTEGTDWAGGGRGVALFLAMFVLLLMTFCCCGFLAGLLLWKAQKHGGGAVGADNFFKSRFPERNSFRWGDQPT 289
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 3 |
Model size | 947 |
Cds size | 945 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816629.069538-CDS-L-elsbetiae_contig5839:1302..1704 | 1622816629.069538-CDS-L-elsbetiae_contig5839:1302..1704 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5839 1303..1704 + |
1691683696.8594625-CDS-L-elsbetiae_contig5839:1302..1704 | 1691683696.8594625-CDS-L-elsbetiae_contig5839:1302..1704 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5839 1303..1704 + |
1622816629.080366-CDS-L-elsbetiae_contig5839:5347..5583 | 1622816629.080366-CDS-L-elsbetiae_contig5839:5347..5583 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5839 5348..5583 + |
1691683696.8722248-CDS-L-elsbetiae_contig5839:5347..5583 | 1691683696.8722248-CDS-L-elsbetiae_contig5839:5347..5583 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5839 5348..5583 + |
1622816629.0906882-CDS-L-elsbetiae_contig5839:6215..6522 | 1622816629.0906882-CDS-L-elsbetiae_contig5839:6215..6522 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5839 6216..6522 + |
1691683696.885597-CDS-L-elsbetiae_contig5839:6215..6522 | 1691683696.885597-CDS-L-elsbetiae_contig5839:6215..6522 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5839 6216..6522 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5839.14286.1 >prot_L-elsbetiae_contig5839.14286.1 ID=prot_L-elsbetiae_contig5839.14286.1|Name=mRNA_L-elsbetiae_contig5839.14286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=315bp
ASGNTRRGLQLLSEGDTVVNGVLNLYTAEGVAACEASCNGAFAEAFGVSD ASIGCVCPEEEDATGRRRRNLGESVAGRENNRSLRGLTALDTPAAAAFTA RISGGLDGGAAALEFLSAFGPSALASSFGVEESELEVTTLTVTPPPSGDA SETLTVITNFFDASDIPILAPSAAGGGSDWAGGGRGAALFLAMLVLLVLT CCCGGCVVLGLLWKNGGGPLAKAANFKRDSFRMHPQVTENPPRPNSEGNA AAASASAGGSSPSLVRRESASRSEDSGNTAAAKAADGGGGIGAGGSHGGD EAAGGGGSTGGGRAP back to topmRNA from alignment at L-elsbetiae_contig5839:1303..6524+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5839.14286.1 ID=mRNA_L-elsbetiae_contig5839.14286.1|Name=mRNA_L-elsbetiae_contig5839.14286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5222bp|location=Sequence derived from alignment at L-elsbetiae_contig5839:1303..6524+ (Laminarionema elsbetiae ELsaHSoW15) GCATCCGGCAACACGCGACGAGGGCTGCAGTTGCTGTCAGAAGGAGACAC
GGTGGTGAACGGTGTGCTGAACCTGTACACCGCGGAAGGGGTGGCGGCAT
GCGAGGCCAGCTGCAACGGTGCTTTCGCTGAGGCTTTCGGCGTGTCAGAC
GCCTCCATCGGGTGTGTATGCCCAGAGGAGGAGGACGCCACAGGCAGGAG
GAGGCGAAATCTCGGGGAATCCGTCGCCGGTCGGGAGAACAATAGAAGCC
TGCGAGGATTGACCGCGCTCGACACACCGGCGGCAGCCGCTTTCACGGCC
CGGATATCGGGCGGCCTTGACGGTGGGGCGGCGGCGCTGGAATTTCTGTC
CGCATTCGGTCCAAGCGCGTTGGCTTCGAGCTTTGGGGTGGAAGAGTCAG
AGGTGTGTGCGGGAAAAGAGATGCGTAAATTGCAAAGACAGAACTTTCTG
GAGAGTACAGAGGGCAGGAGAGAGCTTGGGTGATTGGGTTTCAAGAAAGG
TGGTGCCTGTCTCTCACCCTCCCCATTTGGATCAAATCGTCCCCAAGGCA
AAATATCTCCGGAGGCTGCTGTTAAACAGTCCATTGTGGGTGGAGTCATG
GAACTTACCAAAGCCGAAAATAAAGCCAAGGAGGTGACTTGCGCCGTTCT
CCCGTTTTCACCCGACCGCAGAACCTGCTTGCTGGGTGTTCTGTGTTTCT
GAATACACACTGGAGACGGCTCACAGATGCAAATCTAGGAACTGCTACAT
AGTTGTGACGCCTCATATCCCTATGTCTTGTACTACTGCATGTATTTGCG
GCGAGGAATGGCACACGCACAAGTGGGGGTGTCGATTGAAACGATTGTGA
GAGCACCGCTGCAGATGAATTGTTTTAGCCTAATCAGCCATCTTCCCGTT
GGCCATAACGCCTTTGAGAACGACCTGTTGCAGCGTGTGACCCTGTCTTC
CACACCCCTCTGTCCTGGAGCAACGATTGATTATGTACACATGTACTTGT
AGGATAGCAGAAAATGTGTGCAGCTGCAAGCTGCAGCGGCAGCTTGTTAT
ATTTATTCTTCCGATGTATAGATAAAGTCTACGCATCTCTCATGTACGAT
CTACATGTTATATGAGAAACGACAGGACCCTAGAGGACACGCTACAATAC
GGCGTAACAGGTAGGCGTGCGTGAGTTCGCACAGGGTACGATACTTTTTT
CACGGCCCGATATCCAACACAACGGGGGAGTAGTGGTGGAGTGCACTACT
GTTGCTGTTCTCGAAAAGCCGATTCTTGGAAGATCTTCCCAATAATTGGC
ACCCAAACACTATCTATCGCGCCCCCTCCCTGTGCGAACTCACGCACACT
TACCGGGTAACACCTAAACACAGCAGACTGTCCATCTTTTTTTCAAAATG
TTCATTGAAAATAAATGTCCATCAAGCGTGAATTCGCGTCCGCCCGGAGT
CCGCGAAATCCAGCTGCTTCTCGCGCGTATTGTTCTAACTTACAAGACTT
GCGTCGTACATTTGTAGCAACACCGACGGCGATAATCTCACACATGCCTA
CCTACTGCCGTATATTTATGTAGATAAACAACAGCAATAATAGTATGTAG
ACTAGTAGGTACAACGTAGAGCCATCTCTCCCCAGACACACCGCTCCCTC
GCCTCTTCCTTTTACTGCTGAGTACTGGATAGCACAGAATAGCTCAACAT
CAGCTGCATATCTACATACTGTACAAGCCGAGACGAAAAGACCCGTCCAA
AGTTGCCGTAACCCTCACACGGCAACAGGGATGTACCCCCATCTATCACC
CTGGATCATATGTACCACGCCTCTTCTTTTACTGCTGAATATTATTGGAT
AACACAGCTATTTAGTAGCATAGCTCAACGTCACCTGCATATAGACATGC
ATGCATGGACACAGAGACTTTCAAGCCGAAAAGACAAACACCCGCCCATC
CAGAGAAAGTTGCCGTAACCCTCACCGATGCCACACAGCACAGCTCCTTC
TCGCGTTGTCTTCTGTTATGTTGGATAAGTTATGCTCATACGCCTACTCC
AGAGAGCAGATCAAAAACTCGCTGTACATGCATACAAAGGTACTACTACA
TGCGGTAGGTGTATTTAGGTATGTAGACCCCCCGACACCAAACAGCAAAA
CTCAAAAAGTGGTCCAGTGGGGAGAGTTATCCAAAAGGGAGCGGATTAAT
TTAGGGTAGGTAACATACTTACTACAAGTACCTCTGCTCAGGCGAAGGTA
GTGCGAAGGATCCTGCCGTATGTACCCCCTGCCTACCTGGCACGTAGGCA
CCAAGTTAGTGTGGGTTTGGCAGAAATTCGAGCATGTTTTGCCGTACGAG
TATCCTACCATCAGTATTTAATTATCAGCAAATATCAGGGGGGGGGGAAT
CCGTTGTTATTTATTACCGGAAATGTGTTTCACGTGGCCTCATCCTTGAT
CTACATACCTTCTTTCGGTTTGGAGTTGTTTGGTGTTGATGTGCAGCAGT
GTATAGAATGAGAAAGAAGAAAAGACTTGTATGTACCGGTGCTCGGCTCT
TGAACTAGGCTGAGCTGGGCCTCGCTTGCCTCCCAAACTCTCTCTCTCGT
CTGTTCTCTGTCGGGGTAGAACACTTGGTACGCAGCTCGATTGATGCCTT
TTCGGCTCTTTTTATTAAGCGAGTAGCACCCTTCTGTTTTTTTTAAACAA
AGAGAGTGAGAGAGGTGCGTCGCCGAGTCCTTGGGAATCTGTTTAGCAAC
AACAAAAGACCCACGCAACTAGACTGGGCTCCCGTTAGAACGCCAACACT
CTAATTTACAAATTTACATGGGAAAACGACGCAACCAGGGTATACCCTGG
TAGAACCACGACATAGCTGGGTACCCCTTTCCACAGACATTACATACGCA
TTGCCGACTGGCCAGCGCCACTATTGATCCGGTTCTGGCGCCGTTCGCAC
ATGGGTATGCCCTGCTGCGTCTTTCTCTGTCTCAAATTGTACCCTGCTGC
TCCCGACCTATATACCCTGTTCAGACCGGAATTGCCCCGCACTAAGACTC
TTCTGCCCGCGTGTACGGCACAGCCATGGGATAACCGAAGGAGTCGGCGG
CGCACAACACGGCGTAACAAACCACAACCATGGCATAGACACCCCGCGAT
GTTACACACACATATGGGATATCCCAGGTCGAGTCGGCGCACAACACAGC
CATCGCAAAACACCCCGCGTTATTTTACACACACATACGATGTATGGGTA
TCCCAAGTCGGGGCAGAACCCGGCGTAACAAACGACAGCCAGCCCATGGC
AAATCACAAAGGACACCGACACACGCGTCAGCATCCAGTTCACACACACA
CACACACACACACACACACACAAACCACACACTCCGGTGCCCATGGAAGG
GGGCGTTACCTACCATTTACCTGCCATTTATTTAGGCTACAACTACTTGT
TTTTCAAAACCACAAGGCCCGTGGTACGGGTGGTGAATCAACCATGGGAG
AGAGCTGATGAAGTGTGGCTGTGGCGTTGGATGCTGACGCGTCGGCTCTT
CAACGTGGGGTGTAATGCGATGGCTGTGTCTACGCGCCGACTCGACCTGG
GATATCCCATATGTTTGTCCGTGGGTAATTCAAACGCGGGGTGTTGTGCC
ATGGCTGTGGTTTGATGTGCCGTACAGCGGGCAGAAGAGTCTTGGTGCGG
GGCAATTTCCCGTCTGAACAGGGTACAGGTCGGGAGCAGCACGGTACAAT
TTGGGACAAAGAAAGACGCAGCAGGGTATACCCATGGGTAAACGGCGACA
GAACCGGGTCAATGGTGGCGCTGGCCAATCAGCATGCGCGTGTAATGTCT
GTGGAAAGGGGTACCCAGCTACATATGTCGTGGTTCTACCAGGGTATACC
CTGTTGCGTCGTTTTCCAATTCACGTTTGTTATCCGACACTCTCTCTACC
TTTATTCAATTGATAATATGGGTACGTTGTACCAGTCTAACTTGCGACGT
CTCCCCCTTGTCGCAAAACGACTCGACGACGACGGCAAACAACAGCTGGA
GGTCACGACCCTGACGGTGACCCCCCCGCCCTCCGGCGACGCGAGCGAGA
CCTTGACGGTCATCACGAACTTCTTCGATGCCTCGGACATCCCCATCCTG
GCCCCGTCCGCCGCCGGGGGCGGGTCCGACTGGGCCGGGGGCGGTCGCGG
GGCGGCTCTCTTCTTGGCAATGCTGGTACTGCTCGTGCTGACGTGCTGCT
GCGGCGGCTGTGTGGTCCTTGGGCTGCTCTGGTGAGAACACAAAGGAGCT
ATTTAATTTAGCGACGGGGTTGGTTGGCTTACTCTCTGTCACCTGTCAGA
TGTTGCTACGATGAGCCAGACGAACCCAACGGGAGTCACACGCGTATGTA
TGTATGCGAGTGGAATAAAGGGCGCGTTGCTGTTTCTGCACCTTCGCCAT
GCAAAAGTAGTTGACAAATGTGCACGCCCTTCGATGCAGCAGCAAGTCGG
GCATTTGGTAACGCTCAATTGCCTTGCGGTCTTGAAGAGTTTGGTGTGTG
CGCTGATTGCTCTTTGCACACGTTTCAAATAGCAACATTGATTGGTACAT
AGAGAAGACCGTGAAGGATAAGACCGTTAAGGTATGCAAGGCCACGCGGT
GCGCTCTGGAGGGGGGGGGGAATGACCCTGTTTTTTGTTTCCATTTTATT
TAGCACTTCGTCAAATTTGCGTTGAGACGCATTGGTATACATGTACATAC
GGCACGCAGCATGCTACTTCACACGAGATTTTAGGCCATAAAGGGGGCGT
TTGATTTCCATGCAGCTAGCTGTATATTTCTATGTATATATATACACTTG
GAGGTATATCCGGAAGGACTCATATAGATCCTCCTCCCCACCACCACCAC
CCTTCATACGCAGGAAAAACGGCGGCGGACCGCTGGCGAAAGCTGCGAAT
TTCAAGCGCGACTCGTTCAGAATGCACCCGCAAGTCACCGAGAACCCGCC
GCGGCCCAACTCTGAGGGGAACGCGGCGGCGGCCTCGGCCTCGGCCGGCG
GCTCCTCGCCCAGCCTGGTGCGGCGAGAATCGGCCTCCCGTTCGGAGGAC
TCCGGGAACACAGCAGCCGCCAAGGCTGCCGATGGCGGCGGCGGCATCGG
CGCTGGCGGCTCTCACGGGGGCGACGAGGCAGCCGGGGGGGGAGGGAGCA
CCGGCGGCGGCAGAGCACCGGC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5839:1303..6524+ >mRNA_L-elsbetiae_contig5839.14286.1 ID=mRNA_L-elsbetiae_contig5839.14286.1|Name=mRNA_L-elsbetiae_contig5839.14286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1890bp|location=Sequence derived from alignment at L-elsbetiae_contig5839:1303..6524+ (Laminarionema elsbetiae ELsaHSoW15) GCATCCGGCAACACGCGACGAGGGCTGCAGTTGCTGTCAGAAGGAGACAC GGTGGTGAACGGTGTGCTGAACCTGTACACCGCGGAAGGGGTGGCGGCAT GCGAGGCCAGCTGCAACGGTGCTTTCGCTGAGGCTTTCGGCGTGTCAGAC GCCTCCATCGGGTGTGTATGCCCAGAGGAGGAGGACGCCACAGGCAGGAG GAGGCGAAATCTCGGGGAATCCGTCGCCGGTCGGGAGAACAATAGAAGCC TGCGAGGATTGACCGCGCTCGACACACCGGCGGCAGCCGCTTTCACGGCC CGGATATCGGGCGGCCTTGACGGTGGGGCGGCGGCGCTGGAATTTCTGTC CGCATTCGGTCCAAGCGCGTTGGCTTCGAGCTTTGGGGTGGAAGAGTCAG AGGCATCCGGCAACACGCGACGAGGGCTGCAGTTGCTGTCAGAAGGAGAC ACGGTGGTGAACGGTGTGCTGAACCTGTACACCGCGGAAGGGGTGGCGGC ATGCGAGGCCAGCTGCAACGGTGCTTTCGCTGAGGCTTTCGGCGTGTCAG ACGCCTCCATCGGGTGTGTATGCCCAGAGGAGGAGGACGCCACAGGCAGG AGGAGGCGAAATCTCGGGGAATCCGTCGCCGGTCGGGAGAACAATAGAAG CCTGCGAGGATTGACCGCGCTCGACACACCGGCGGCAGCCGCTTTCACGG CCCGGATATCGGGCGGCCTTGACGGTGGGGCGGCGGCGCTGGAATTTCTG TCCGCATTCGGTCCAAGCGCGTTGGCTTCGAGCTTTGGGGTGGAAGAGTC AGAGCTGGAGGTCACGACCCTGACGGTGACCCCCCCGCCCTCCGGCGACG CGAGCGAGACCTTGACGGTCATCACGAACTTCTTCGATGCCTCGGACATC CCCATCCTGGCCCCGTCCGCCGCCGGGGGCGGGTCCGACTGGGCCGGGGG CGGTCGCGGGGCGGCTCTCTTCTTGGCAATGCTGGTACTGCTCGTGCTGA CGTGCTGCTGCGGCGGCTGTGTGGTCCTTGGGCTGCTCTGCTGGAGGTCA CGACCCTGACGGTGACCCCCCCGCCCTCCGGCGACGCGAGCGAGACCTTG ACGGTCATCACGAACTTCTTCGATGCCTCGGACATCCCCATCCTGGCCCC GTCCGCCGCCGGGGGCGGGTCCGACTGGGCCGGGGGCGGTCGCGGGGCGG CTCTCTTCTTGGCAATGCTGGTACTGCTCGTGCTGACGTGCTGCTGCGGC GGCTGTGTGGTCCTTGGGCTGCTCTGGAAAAACGGCGGCGGACCGCTGGC GAAAGCTGCGAATTTCAAGCGCGACTCGTTCAGAATGCACCCGCAAGTCA CCGAGAACCCGCCGCGGCCCAACTCTGAGGGGAACGCGGCGGCGGCCTCG GCCTCGGCCGGCGGCTCCTCGCCCAGCCTGGTGCGGCGAGAATCGGCCTC CCGTTCGGAGGACTCCGGGAACACAGCAGCCGCCAAGGCTGCCGATGGCG GCGGCGGCATCGGCGCTGGCGGCTCTCACGGGGGCGACGAGGCAGCCGGG GGGGGAGGGAGCACCGGCGGCGGCAGAGCACCGGAAAAACGGCGGCGGAC CGCTGGCGAAAGCTGCGAATTTCAAGCGCGACTCGTTCAGAATGCACCCG CAAGTCACCGAGAACCCGCCGCGGCCCAACTCTGAGGGGAACGCGGCGGC GGCCTCGGCCTCGGCCGGCGGCTCCTCGCCCAGCCTGGTGCGGCGAGAAT CGGCCTCCCGTTCGGAGGACTCCGGGAACACAGCAGCCGCCAAGGCTGCC GATGGCGGCGGCGGCATCGGCGCTGGCGGCTCTCACGGGGGCGACGAGGC AGCCGGGGGGGGAGGGAGCACCGGCGGCGGCAGAGCACCG back to top
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