mRNA_L-elsbetiae_contig5836.14285.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5836.14285.1
Unique NamemRNA_L-elsbetiae_contig5836.14285.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5836.14285.1 vs. uniprot
Match: D7FTP3_ECTSI (Putative GPI-anchor transamidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTP3_ECTSI)

HSP 1 Score: 355 bits (912), Expect = 1.000e-120
Identity = 182/220 (82.73%), Postives = 189/220 (85.91%), Query Frame = 1 
Query:    1 MGKKARARMLLAFPRPVAVRKACRVCFLAV--VGLLLCVVPLCSS-----GAAGAASGESSRHNNNWAVLVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPGGVYNNKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGTPPSKTLATDEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRV 639
            M K+A + + L   R   VRK  R  FL++    LLLC VPL S+       A  A G SSRHNNNWAVLVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPGGVYN+KDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGTPPSKTLATDEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRV
Sbjct:    1 MKKRAGSGVSLLVVRSAEVRKTYRAWFLSISLAVLLLCSVPLFSAVGVTASTAAGAKGASSRHNNNWAVLVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPGGVYNSKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGTPPSKTLATDEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRV 220
[Close]
BLAST of mRNA_L-elsbetiae_contig5836.14285.1 vs. uniprot
Match: A0A7S2V326_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V326_9STRA)

HSP 1 Score: 264 bits (675), Expect = 2.390e-85
Identity = 120/162 (74.07%), Postives = 137/162 (84.57%), Query Frame = 1 
Query:  154 ESSRHNNNWAVLVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPGGVYNNKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGTPPSKTLATDEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRV 639
            E  RHNNNW VLV TSRFWFNYRH+ANTLS+YHTV+RLGIPDS I+LMLADDMPCNARNP+PG +YNNKD +LNLY   VEVDYRG +V+VE+FLRLLTGRT PG P SK L TDEHSN+LI+M+GHGGD FLKF D EEVSSHD+  A+ EM +K RYH +
Sbjct:   27 EKLRHNNNWVVLVSTSRFWFNYRHIANTLSIYHTVKRLGIPDSQIILMLADDMPCNARNPYPGEIYNNKDRKLNLYGDVVEVDYRGTDVTVENFLRLLTGRTKPGLPFSKLLNTDEHSNILIFMSGHGGDGFLKFQDSEEVSSHDIADAIEEMNIKGRYHEI 188
[Close]
BLAST of mRNA_L-elsbetiae_contig5836.14285.1 vs. uniprot
Match: A0A4P9X3E7_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9X3E7_9FUNG)

HSP 1 Score: 241 bits (615), Expect = 6.640e-77
Identity = 109/158 (68.99%), Postives = 127/158 (80.38%), Query Frame = 1 
Query:  166 HNNNWAVLVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPGGVYNNKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGTPPSKTLATDEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRV 639
            H NNWAVLVCTSRFWFNYRHVANTLS+YHTV+RLGIPDSNI+LMLADDM CN RN FP  VY+N    +NLY  D+EVDYRG EV+VE+F+RLLTGR  P  P SK L TD+ SN+L+YM GHGGD+FLKF D EE+SSHD+  A  +M  K+RYH +
Sbjct:    1 HANNWAVLVCTSRFWFNYRHVANTLSIYHTVKRLGIPDSNIILMLADDMACNPRNRFPATVYHNAQRVMNLYGTDIEVDYRGYEVTVENFIRLLTGRLGPDVPRSKRLNTDDRSNILVYMTGHGGDEFLKFQDYEEISSHDIADAFAQMHEKRRYHEI 158
[Close]
BLAST of mRNA_L-elsbetiae_contig5836.14285.1 vs. uniprot
Match: E3JXE4_PUCGT (Uncharacterized protein n=1 Tax=Puccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL) TaxID=418459 RepID=E3JXE4_PUCGT)

HSP 1 Score: 239 bits (610), Expect = 5.910e-76
Identity = 109/158 (68.99%), Postives = 129/158 (81.65%), Query Frame = 1 
Query:  166 HNNNWAVLVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPGGVYNNKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGTPPSKTLATDEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRV 639
            H+NNWAVLVCTSRFWFNYRH+ANTL +Y +V+RLGIPDSNI+LMLADDM CN RN FPG VY+N D +L+LY   +EVDYRGEEVSVE+F+RLLTGR   GTP SK L TDE SN+L+YM GHGGD+FLKF D EE+S+ DL  A + M  KKRY+ +
Sbjct:   37 HSNNWAVLVCTSRFWFNYRHIANTLGMYRSVKRLGIPDSNIILMLADDMACNPRNMFPGTVYSNSDRKLDLYGDGIEVDYRGEEVSVENFIRLLTGRVAEGTPRSKRLMTDERSNILVYMTGHGGDEFLKFQDAEEISAFDLADAFQTMWAKKRYNEL 194
[Close]
BLAST of mRNA_L-elsbetiae_contig5836.14285.1 vs. uniprot
Match: UPI0020080FF5 (hypothetical protein n=1 Tax=Puccinia striiformis f. sp. tritici TaxID=168172 RepID=UPI0020080FF5)

HSP 1 Score: 241 bits (616), Expect = 6.560e-76
Identity = 110/163 (67.48%), Postives = 132/163 (80.98%), Query Frame = 1 
Query:  151 GESSRHNNNWAVLVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPGGVYNNKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGTPPSKTLATDEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRV 639
            G +  H+NNWAVLVCTSRFWFNYRH+ANTL +Y +V+RLGIPDSNI+LMLADDM CN RN FPG VY+N D +L+LY   +EVDYRGEEVSVE+F+RLLTGR + GTP SK L TDE SN+L+YM GHGGD+FLKF D EE+S+ DL  A + M  KKRY+ +
Sbjct:   16 GNALDHSNNWAVLVCTSRFWFNYRHIANTLGMYRSVKRLGIPDSNIILMLADDMACNPRNMFPGTVYSNSDRKLDLYGDGIEVDYRGEEVSVENFIRLLTGRVVEGTPRSKRLMTDERSNILVYMTGHGGDEFLKFQDSEEISAFDLADAFQTMWAKKRYNEL 178
[Close]
BLAST of mRNA_L-elsbetiae_contig5836.14285.1 vs. uniprot
Match: A0A2T9Z4R0_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Smittium megazygosporum TaxID=133381 RepID=A0A2T9Z4R0_9FUNG)

HSP 1 Score: 239 bits (610), Expect = 6.110e-75
Identity = 110/162 (67.90%), Postives = 130/162 (80.25%), Query Frame = 1 
Query:  154 ESSRHNNNWAVLVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPGGVYNNKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGTPPSKTLATDEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRV 639
              S H NNWAVLVCTSRFWFNYRH+ANTLS+Y TV+RLGIPDSNI+LMLADDM CN RN +P  VY++ +H+++LY  +VEVDYRG EV+VE+F+RLLTGR    TP SK L TDE SN+LIYM GHGGDQFLKF D EE+SSHD+  A  +M  KKRYH +
Sbjct:   26 SDSGHTNNWAVLVCTSRFWFNYRHIANTLSMYRTVKRLGIPDSNIILMLADDMACNPRNAYPATVYDHPNHKVDLYGQNVEVDYRGYEVTVENFIRLLTGRVSHDTPRSKRLLTDEKSNILIYMTGHGGDQFLKFQDSEEISSHDIADAFAQMWEKKRYHEI 187
[Close]
BLAST of mRNA_L-elsbetiae_contig5836.14285.1 vs. uniprot
Match: A0A2T9Y9J8_9FUNG (Uncharacterized protein n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9Y9J8_9FUNG)

HSP 1 Score: 234 bits (597), Expect = 9.200e-75
Identity = 107/162 (66.05%), Postives = 129/162 (79.63%), Query Frame = 1 
Query:  154 ESSRHNNNWAVLVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPGGVYNNKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGTPPSKTLATDEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRV 639
             SS H NNWAVLVCTSRFWFNYRHVANTLS+Y TV+RLGIPDSNI+LMLADDM CN+RN     VY++ +H+++LY  +VEVDYRG EV+VE+F+RLLTGR    TP SK L TDE SN+ +YM GHGGD+FLKF D +E+SSHD+  A  +M  KKRYH +
Sbjct:   26 SSSGHTNNWAVLVCTSRFWFNYRHVANTLSMYRTVKRLGIPDSNIILMLADDMACNSRNKKVAAVYDHPNHQVDLYGDNVEVDYRGYEVTVENFVRLLTGRVSEDTPRSKRLLTDEKSNIFVYMTGHGGDEFLKFQDFDEISSHDIADAFHQMWEKKRYHEI 187
[Close]
BLAST of mRNA_L-elsbetiae_contig5836.14285.1 vs. uniprot
Match: A0A899FZ46_9ASCO (Uncharacterized protein n=1 Tax=Pneumocystis wakefieldiae TaxID=38082 RepID=A0A899FZ46_9ASCO)

HSP 1 Score: 239 bits (609), Expect = 1.680e-74
Identity = 104/163 (63.80%), Postives = 132/163 (80.98%), Query Frame = 1 
Query:  151 GESSRHNNNWAVLVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPGGVYNNKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGTPPSKTLATDEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRV 639
            G+ +R+ +NWAVLV TSRFWFNYRH+ANTL +Y T++RLGIPDS I+LML+DD+ CN+RN +PG V++N DH L+LY  D+EVDYRG EV+VE+F+RLLTGR LPGTP SK L TD+ SN+L+YM GHGGD FLKF D EE+ SHD+  A  +M  K+RYH +
Sbjct:   31 GQKTRYTSNWAVLVSTSRFWFNYRHMANTLGMYRTIKRLGIPDSQIILMLSDDIACNSRNVYPGSVFHNSDHALDLYGDDIEVDYRGYEVTVENFIRLLTGRVLPGTPRSKQLLTDDRSNILVYMTGHGGDNFLKFQDFEEICSHDIADAFGQMWEKRRYHEI 193
[Close]
BLAST of mRNA_L-elsbetiae_contig5836.14285.1 vs. uniprot
Match: A0A804L7S9_MUSAM (Uncharacterized protein n=3 Tax=Musa TaxID=4640 RepID=A0A804L7S9_MUSAM)

HSP 1 Score: 239 bits (609), Expect = 2.290e-74
Identity = 114/178 (64.04%), Postives = 140/178 (78.65%), Query Frame = 1 
Query:   97 LLLCVVPLCSSGAAGAASGESSRHNNNWAVLVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPGGVYNNKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGTPPSKTLATDEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRY 630
            L L +VPL SS      S  ++ HNNNWAVLVCTSRFWFNYRH+ANTLS+Y TV+RLGIPD  I+LMLADDM CNARN +P  V+NN++H+LNLY  +VEVDYRG EV+VE+FLR+LTGR  P  P SK L +DE S++L+YM GHGGD+FLKF D EE+ SHDL  A+R+M+ K R+
Sbjct:   17 LFLVLVPLTSSSP----SSWATMHNNNWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNARNNYPAQVFNNENHQLNLYGDNVEVDYRGYEVTVENFLRVLTGRHDPAVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDSEELQSHDLADAVRQMKEKSRF 190
[Close]
BLAST of mRNA_L-elsbetiae_contig5836.14285.1 vs. uniprot
Match: A0A180GN24_PUCT1 (Uncharacterized protein n=3 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A180GN24_PUCT1)

HSP 1 Score: 238 bits (608), Expect = 2.310e-74
Identity = 108/162 (66.67%), Postives = 131/162 (80.86%), Query Frame = 1 
Query:  154 ESSRHNNNWAVLVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPGGVYNNKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGTPPSKTLATDEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRV 639
            ++  H+NNWAVLVCTSRFWFNYRH+ANTL +Y +V+RLGIPDSNI+LMLADDM CN RN FPG VY+N + +L+LY   +EVDYRGEEVSVE+F+RLLTGR   GTP SK L TDE SN+L+YM GHGGD+FLKF D EE+S+ DL  A + M  KKRY+ +
Sbjct:   33 DAVNHSNNWAVLVCTSRFWFNYRHIANTLGMYRSVKRLGIPDSNIILMLADDMACNPRNMFPGTVYSNSERKLDLYGDGIEVDYRGEEVSVENFIRLLTGRVAEGTPRSKRLMTDERSNILVYMTGHGGDEFLKFQDAEEISAFDLADAFQTMWAKKRYNEL 194
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5836.14285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTP3_ECTSI1.000e-12082.73Putative GPI-anchor transamidase n=2 Tax=Ectocarpu... [more]
A0A7S2V326_9STRA2.390e-8574.07Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4P9X3E7_9FUNG6.640e-7768.99Uncharacterized protein (Fragment) n=1 Tax=Cauloch... [more]
E3JXE4_PUCGT5.910e-7668.99Uncharacterized protein n=1 Tax=Puccinia graminis ... [more]
UPI0020080FF56.560e-7667.48hypothetical protein n=1 Tax=Puccinia striiformis ... [more]
A0A2T9Z4R0_9FUNG6.110e-7567.90Uncharacterized protein (Fragment) n=1 Tax=Smittiu... [more]
A0A2T9Y9J8_9FUNG9.200e-7566.05Uncharacterized protein n=1 Tax=Smittium simulii T... [more]
A0A899FZ46_9ASCO1.680e-7463.80Uncharacterized protein n=1 Tax=Pneumocystis wakef... [more]
A0A804L7S9_MUSAM2.290e-7464.04Uncharacterized protein n=3 Tax=Musa TaxID=4640 Re... [more]
A0A180GN24_PUCT12.310e-7466.67Uncharacterized protein n=3 Tax=Puccinia triticina... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5836contigL-elsbetiae_contig5836:8960..11888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score357.1
Seed ortholog evalue5.9e-96
Seed eggNOG ortholog2880.D7FTP3
Preferred namePIGK
KEGG koko:K05290
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003756,GO:0003824,GO:0003923,GO:0004175,GO:0004197,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006508,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016255,GO:0016787,GO:0016853,GO:0016860,GO:0016864,GO:0019538,GO:0019637,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0033036,GO:0034394,GO:0034613,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0042765,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0051179,GO:0051641,GO:0070011,GO:0070727,GO:0071704,GO:0090407,GO:0098796,GO:0098827,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1903509
EggNOG free text desc.cysteine-type peptidase activity
EggNOG OGsCOG5206@1,KOG1349@2759
Ec32 ortholog descriptionputative GPI-anchor transamidase
Ec32 orthologEc-11_001670.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons4
Model size651
Cds size651
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5836.14285.1prot_L-elsbetiae_contig5836.14285.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5836 8960..11888 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816629.0030332-CDS-L-elsbetiae_contig5836:8959..91481622816629.0030332-CDS-L-elsbetiae_contig5836:8959..9148Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5836 8960..9148 +
1691683696.8041098-CDS-L-elsbetiae_contig5836:8959..91481691683696.8041098-CDS-L-elsbetiae_contig5836:8959..9148Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5836 8960..9148 +
1622816629.0157754-CDS-L-elsbetiae_contig5836:10108..103261622816629.0157754-CDS-L-elsbetiae_contig5836:10108..10326Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5836 10109..10326 +
1691683696.8192558-CDS-L-elsbetiae_contig5836:10108..103261691683696.8192558-CDS-L-elsbetiae_contig5836:10108..10326Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5836 10109..10326 +
1622816629.0282922-CDS-L-elsbetiae_contig5836:11136..112121622816629.0282922-CDS-L-elsbetiae_contig5836:11136..11212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5836 11137..11212 +
1691683696.8315318-CDS-L-elsbetiae_contig5836:11136..112121691683696.8315318-CDS-L-elsbetiae_contig5836:11136..11212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5836 11137..11212 +
1622816629.0387974-CDS-L-elsbetiae_contig5836:11720..118881622816629.0387974-CDS-L-elsbetiae_contig5836:11720..11888Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5836 11721..11888 +
1691683696.843631-CDS-L-elsbetiae_contig5836:11720..118881691683696.843631-CDS-L-elsbetiae_contig5836:11720..11888Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5836 11721..11888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5836.14285.1

>prot_L-elsbetiae_contig5836.14285.1 ID=prot_L-elsbetiae_contig5836.14285.1|Name=mRNA_L-elsbetiae_contig5836.14285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=217bp
MGKKARARMLLAFPRPVAVRKACRVCFLAVVGLLLCVVPLCSSGAAGAAS
GESSRHNNNWAVLVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLML
ADDMPCNARNPFPGGVYNNKDHELNLYEGDVEVDYRGEEVSVESFLRLLT
GRTLPGTPPSKTLATDEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGA
LREMELKKRYHRVRAF*
back to top

mRNA from alignment at L-elsbetiae_contig5836:8960..11888+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5836.14285.1 ID=mRNA_L-elsbetiae_contig5836.14285.1|Name=mRNA_L-elsbetiae_contig5836.14285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2929bp|location=Sequence derived from alignment at L-elsbetiae_contig5836:8960..11888+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGAAGAAAGCCAGAGCTAGGATGTTGCTGGCTTTCCCGCGCCCGGT
GGCGGTGCGAAAGGCATGCAGGGTGTGTTTTCTCGCTGTGGTCGGTCTGC
TGCTGTGTGTTGTTCCGTTATGCTCGAGCGGTGCTGCCGGTGCTGCTTCA
GGGGAAAGCTCTCGCCATAACAATAACTGGGCTGTGCTGGTAAGACGGTG
GTGACTTTTACGCAAGTAAAGCAGTTACCTGTGATGACAATCCTGGATGC
GAAAATTGGAGCGGATAAAGTCGCGAGGTGACGCGGCCTAACCGTGGGCT
ACCAGTTCTGCCACGGGTACTTGTTTTAGTCTATGTAGGAGTACACTCTA
CTCTAACACGCGCGCGTGTAGGACGACATGGGGCACTGCTGGGTAGGACT
GTCGCGTGTTGACGAATAACTGTAGCTCCGAATGCTCAAGCTAGGTACAG
CATGCCAGGTGGTCGGAGCTGAAAATACTCCACCTTCTGCTGCATGCAGT
GGTAGGATACAAGGATACTTCTACGAGATGTAGCAGACTACACAGAGCAC
ACAGCAGCAGTAGCTATCTATCTGCACATATGTAGGTCTCCGAGAACGCT
TGCACAGCAGTTAAACATCGCGAACACAGCACGCGGGCTATCGGGCATAC
ATAGAAGTGGAAAATTCCGCGTACTCGATGACTGCCCGTTCGCTTGAGGA
TCATGTCGAGGCACCCCTTGTTGCCCTGTCAAGCGATAGCTCTGTGCCTG
CTATCCGTTGCGATATGACATGGGATCGACCTGAACATTCCGAGTAAAAA
AATTCAACATCACAACAGTAGGGGGTAGATATGGGTGTCTGCGTCAGTAT
TACATCTACGTAGAGAAAATCAGAGGCCAGGGAGGCTAGAGAAGCCGGTG
GCTCAACCGAACAAAACCCCGTGGGTTTTGAGCGTATCGTCGTTTAGGCC
CCTTCGAGCAACAGGTCGCCCTCTTGCCGCCGTCGGCACGGTTTGCACCA
TTTTCCCCCGAGTGCAGCTTCCAGGTCTACGAGCTTGCTTAAACCGACGA
CAAATTATGTACGTACATATGTGTAGCATAAGATACATTTAGTCTACATA
CATGTACGTTGAGCACGTGTGCACACCAACAACGAACAAACAACGGCAGG
TGTGCACGTCTCGCTTCTGGTTCAACTACCGCCACGTGGCCAACACCCTG
TCGGTGTACCACACGGTGCGGCGCCTGGGCATCCCAGACTCGAACATCGT
GCTCATGCTGGCGGACGACATGCCTTGCAACGCCAGAAATCCGTTCCCCG
GGGGCGTGTACAACAACAAGGACCACGAGCTGAACCTCTACGAGGGCGAT
GTTGAGGTCGACTACCGGTGGGTCGGGGGGGTTGTGGGTTAGGTTGACGG
GTGCTAGGGTTTCTTGGCGTCTGTGCGGTTCGTTGAACCCGCGGGGGTTT
TCGTGGGCCCTGGGATGTGGAAGGCGTCGAGGTGTTGAAAATAATCCGGG
TTGTTTTATCAGCCAGCACGTGCGCATTGCGCCCCGAGCGATCGTCACTT
CTGTGCGGAGGGGGGAGGCGCATCGAAGTCCATACTGCCTGTCTCCACGG
CAAGGGAAAAGGAAAAGGCTGGTACTAGTTGTAGTTCAACTACTCGTCCT
GAAAGGAGATGGCTGGAGATAAGTACAGGCTAGGTAGGTACTTACCCACT
GCCGAGCGCGGCCGCCCTGCGAGTTTGCGTGACTTTCGAAGCGCTGGGTT
GGTCGATCTGCACGAGCTCGGCCCTTCAGTCCTGGTAGCGCGCGTTTTTG
GCGTGCTGGCTTGCGTCGTTGTTGGGTACCTGCGTGTGCTACCTATTGCT
TGTGTGTGTGTTTTTTTTTTTCTCCATTCACATCTGCTTATACCTCAGCT
GCTGCTTGTTTGGTGGTTTCCAGCCTGCCACTCCTGGCCCACAATACACT
TTGAACCCCACATCGAGTCCTCGCTCTAGTGTGGGGGTAGGTTCCATCTT
TGATTCGTTGTTTATTTTTTAAAGAGCCGAATACCTCTTCCGCCAAGCTT
CTTCTGCCAAATACCAATATTGTAGCTGCTTCCAAACGGCCGAAAAGGCG
AACCGTTGACAGAGCGTGTTTGGTTTTTACTTGTTCGTGCTTTTTTTTTT
TCTCTTGCGTTGTCGTTTTCGCCGCAGGGGAGAAGAAGTGAGCGTAGAGA
GCTTCCTGCGGCTCTTGACAGGGCGAACGCTGCCTGGAACACCGCCTTCT
AAGGTACAATCAAAGCCCGCAGAATCCGTTTTGGCGAGAGGAGTTAAGGG
CAGCAACTCTCCCCTTGCTTTGCTCCCAACCTTTTCAGGCACTCACATTG
TCTCGGAGGTTGCATTGTTTTTTGGGAGACAACCGACCGCGCCCAGTGCG
CAAAACCCTTGCGAAAGTCCCTCTATTACTAGTGTTTTGTTTTTTTGTCT
GTCTGTGTTGCTGCCGGCGTGCTTCCTGTTCCTCTACACCACTCTCCCCT
CCCTTGACACTCTCCTCCCGCCCCCTCCGCTCTCTTCTGCCTCTTCCTAT
CCCTCCCTGCACATTGCCCCCTCTCCACTCTCCTCCTCCGACTCTCCCTC
TGTCTGTCGATCTGCCTGCTCGTCCGTCTCTCTCTCCCCCTATATCTCTC
TCCCCCGCCCCCCCCCCGCCCCACTTTATTCATCTTAACCCCCTCTTTGT
TGCGTCCCCCCCCTATCCCCCCGTCTCCCGCCCAACTCTCCGCGCGTGTG
TGACGCCTCAGACGCTCGCCACCGACGAACACAGCAACGTGCTGATCTAC
ATGAACGGCCACGGGGGAGACCAGTTCCTCAAGTTTCACGACATGGAAGA
AGTGTCCAGCCACGATCTCGGGGGGGCTCTGCGGGAGATGGAGCTCAAGA
AGCGATATCACAGGGTGCGCGCCTTCTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5836:8960..11888+

>mRNA_L-elsbetiae_contig5836.14285.1 ID=mRNA_L-elsbetiae_contig5836.14285.1|Name=mRNA_L-elsbetiae_contig5836.14285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1302bp|location=Sequence derived from alignment at L-elsbetiae_contig5836:8960..11888+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGAAGAAAGCCAGAGCTAGGATGTTGCTGGCTTTCCCGCGCCCGGT
GGCGGTGCGAAAGGCATGCAGGGTGTGTTTTCTCGCTGTGGTCGGTCTGC
TGCTGTGTGTTGTTCCGTTATGCTCGAGCGGTGCTGCCGGTGCTGCTTCA
GGGGAAAGCTCTCGCCATAACAATAACTGGGCTGTGCTGATGGGGAAGAA
AGCCAGAGCTAGGATGTTGCTGGCTTTCCCGCGCCCGGTGGCGGTGCGAA
AGGCATGCAGGGTGTGTTTTCTCGCTGTGGTCGGTCTGCTGCTGTGTGTT
GTTCCGTTATGCTCGAGCGGTGCTGCCGGTGCTGCTTCAGGGGAAAGCTC
TCGCCATAACAATAACTGGGCTGTGCTGGTGTGCACGTCTCGCTTCTGGT
TCAACTACCGCCACGTGGCCAACACCCTGTCGGTGTACCACACGGTGCGG
CGCCTGGGCATCCCAGACTCGAACATCGTGCTCATGCTGGCGGACGACAT
GCCTTGCAACGCCAGAAATCCGTTCCCCGGGGGCGTGTACAACAACAAGG
ACCACGAGCTGAACCTCTACGAGGGCGATGTTGAGGTCGACTACCGGTGT
GCACGTCTCGCTTCTGGTTCAACTACCGCCACGTGGCCAACACCCTGTCG
GTGTACCACACGGTGCGGCGCCTGGGCATCCCAGACTCGAACATCGTGCT
CATGCTGGCGGACGACATGCCTTGCAACGCCAGAAATCCGTTCCCCGGGG
GCGTGTACAACAACAAGGACCACGAGCTGAACCTCTACGAGGGCGATGTT
GAGGTCGACTACCGGGGAGAAGAAGTGAGCGTAGAGAGCTTCCTGCGGCT
CTTGACAGGGCGAACGCTGCCTGGAACACCGCCTTCTAAGGGGAGAAGAA
GTGAGCGTAGAGAGCTTCCTGCGGCTCTTGACAGGGCGAACGCTGCCTGG
AACACCGCCTTCTAAGACGCTCGCCACCGACGAACACAGCAACGTGCTGA
TCTACATGAACGGCCACGGGGGAGACCAGTTCCTCAAGTTTCACGACATG
GAAGAAGTGTCCAGCCACGATCTCGGGGGGGCTCTGCGGGAGATGGAGCT
CAAGAAGCGATATCACAGGGTGCGCGCCTTCTAAACGCTCGCCACCGACG
AACACAGCAACGTGCTGATCTACATGAACGGCCACGGGGGAGACCAGTTC
CTCAAGTTTCACGACATGGAAGAAGTGTCCAGCCACGATCTCGGGGGGGC
TCTGCGGGAGATGGAGCTCAAGAAGCGATATCACAGGGTGCGCGCCTTCT
AA
back to top