mRNA_L-elsbetiae_contig5835.14284.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5835.14284.1
Unique NamemRNA_L-elsbetiae_contig5835.14284.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5835.14284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5835contigL-elsbetiae_contig5835:10655..11012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size359
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816628.9076495-CDS-L-elsbetiae_contig5835:10654..110111622816628.9076495-CDS-L-elsbetiae_contig5835:10654..11011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5835 10655..11011 +
1691683696.756997-CDS-L-elsbetiae_contig5835:10654..110111691683696.756997-CDS-L-elsbetiae_contig5835:10654..11011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5835 10655..11011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5835.14284.1prot_L-elsbetiae_contig5835.14284.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5835 10655..11011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5835.14284.1

>prot_L-elsbetiae_contig5835.14284.1 ID=prot_L-elsbetiae_contig5835.14284.1|Name=mRNA_L-elsbetiae_contig5835.14284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
FLLRASCLAIVALFFELLALRWRQNVSLNSSLRLVCCLLAGCFLLRLVSK
TAAEERLAAMVHRKLCEKLEESFKGCQSAVKGVWIRLGDATEVGFGLTVA
PPVPPSSTAAAAAVPDKEG
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mRNA from alignment at L-elsbetiae_contig5835:10655..11012+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5835.14284.1 ID=mRNA_L-elsbetiae_contig5835.14284.1|Name=mRNA_L-elsbetiae_contig5835.14284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=358bp|location=Sequence derived from alignment at L-elsbetiae_contig5835:10655..11012+ (Laminarionema elsbetiae ELsaHSoW15)
TTTCTGCTGCGTGCGTCATGCCTCGCCATTGTTGCCCTATTTTTCGAACT
GCTGGCGTTGCGATGGCGCCAAAACGTATCCCTCAACAGCAGCTTGCGCC
TGGTGTGCTGCCTGCTCGCGGGCTGCTTCCTCCTTCGCTTGGTGAGCAAA
ACTGCAGCAGAGGAGAGGCTTGCCGCGATGGTCCACCGGAAGCTGTGCGA
GAAGTTAGAGGAATCTTTCAAGGGATGCCAGTCTGCGGTGAAAGGTGTCT
GGATTAGGTTGGGCGATGCCACGGAAGTCGGGTTTGGTCTGACGGTTGCT
CCGCCAGTTCCACCCTCTTCGACCGCAGCTGCTGCTGCGGTGCCAGACAA
GGAGGGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5835:10655..11012+

>mRNA_L-elsbetiae_contig5835.14284.1 ID=mRNA_L-elsbetiae_contig5835.14284.1|Name=mRNA_L-elsbetiae_contig5835.14284.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig5835:10655..11012+ (Laminarionema elsbetiae ELsaHSoW15)
TTTCTGCTGCGTGCGTCATGCCTCGCCATTGTTGCCCTATTTTTCGAACT
GCTGGCGTTGCGATGGCGCCAAAACGTATCCCTCAACAGCAGCTTGCGCC
TGGTGTGCTGCCTGCTCGCGGGCTGCTTCCTCCTTCGCTTGGTGAGCAAA
ACTGCAGCAGAGGAGAGGCTTGCCGCGATGGTCCACCGGAAGCTGTGCGA
GAAGTTAGAGGAATCTTTCAAGGGATGCCAGTCTGCGGTGAAAGGTGTCT
GGATTAGGTTGGGCGATGCCACGGAAGTCGGGTTTGGTCTGACGGTTGCT
CCGCCAGTTCCACCCTCTTCGACCGCAGCTGCTGCTGCGGTGCCAGACAA
GGAGGGATTTCTGCTGCGTGCGTCATGCCTCGCCATTGTTGCCCTATTTT
TCGAACTGCTGGCGTTGCGATGGCGCCAAAACGTATCCCTCAACAGCAGC
TTGCGCCTGGTGTGCTGCCTGCTCGCGGGCTGCTTCCTCCTTCGCTTGGT
GAGCAAAACTGCAGCAGAGGAGAGGCTTGCCGCGATGGTCCACCGGAAGC
TGTGCGAGAAGTTAGAGGAATCTTTCAAGGGATGCCAGTCTGCGGTGAAA
GGTGTCTGGATTAGGTTGGGCGATGCCACGGAAGTCGGGTTTGGTCTGAC
GGTTGCTCCGCCAGTTCCACCCTCTTCGACCGCAGCTGCTGCTGCGGTGC
CAGACAAGGAGGGA
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