mRNA_L-elsbetiae_contig5828.14268.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5828.14268.1
Unique NamemRNA_L-elsbetiae_contig5828.14268.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5828.14268.1 vs. uniprot
Match: D7FT97_ECTSI (T5orf172 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT97_ECTSI)

HSP 1 Score: 350 bits (898), Expect = 8.570e-113
Identity = 179/262 (68.32%), Postives = 196/262 (74.81%), Query Frame = 1 
Query:  244 PKEGSSRAETNGTPRERTLEELRAECRKRGMTGFSHLKKKELVRRMEDYDSLDISKQGTKTTRSPTGRGKIMKTILGGKQKREQHRQRTRKKGPLRSRAQERFDVGPSAQDTPGFLYIYSEPGSESSGDGSSGDRVKEWKIGKTILDPPERRMNQSAQNNRKVYKLHASWYVPWCGYVEKIVHLDLDDFQVVPGKEKKWEGGGREDGGTEWFRTDIDIIEARVKLAIRMVAAREADEADSLGIS-AFCGMFRCGLPKRW*RR 1026
            P   S        PRE TLEELRAECRKRGMTG+SHLKK+EL+RRM DY S D   +G K + S    GK  +    G+  +E+ +QR R KGPLRSRAQERFD GPS QDTPGFLYIY E G          D+ KEWKIGKT LDPPERRM QSA NNRK Y L ASW+VPWCGYVEKIVHLDLDD +VVPGKEK W+GGGREDGGTEWFR DID++EARVKLAIRMVAAREADEAD LG+  AFCGMFRCGLP R  RR
Sbjct:  105 PSSSSGNTPGEAKPREATLEELRAECRKRGMTGYSHLKKQELIRRMADYKSSDNGSKGVKASPSVARGGKATRIRFLGRGGKEKQQQRARMKGPLRSRAQERFDAGPSPQDTPGFLYIYCESGXXXX---XXXDKTKEWKIGKTTLDPPERRMKQSAHNNRKAYTLRASWHVPWCGYVEKIVHLDLDDLKVVPGKEKSWDGGGREDGGTEWFRADIDVVEARVKLAIRMVAAREADEADFLGVQPAFCGMFRCGLPVRRRRR 363
[Close]
BLAST of mRNA_L-elsbetiae_contig5828.14268.1 vs. uniprot
Match: A0A6H5JBR9_9PHAE (T5orf172 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBR9_9PHAE)

HSP 1 Score: 291 bits (746), Expect = 3.450e-92
Identity = 146/218 (66.97%), Postives = 164/218 (75.23%), Query Frame = 1 
Query:  379 MEDYDSLDISKQGTKTTRSPTGRGKIMKTILGGKQKREQHRQRTRKKGPLRSRAQERFDVGPSAQDTPGFLYIYSEPGSESSGDGSSGDRVKEWKIGKTILDPPERRMNQSAQNNRKVYKLHASWYVPWCGYVEKIVHLDLDDFQVVPGKEKKWEGGGREDGGTEWFRTDIDIIEARVKLAIRMVAAREADEADSLGIS-AFCGMFRCGLPKRW*RRQ 1029
            M DY+S D   +G K + +    GK  +    G+  +E+ +QR R KGPLRSRAQERFD GPS QDTPGFLYIY E G          D+ +EWKIGKT LDPPERRM QSA NNRK Y L ASW+VPWCGYVEKIVHLDLDD +VVPGKEK W+GGGREDGGTEWFR DI+++EARVKLAIRMVAAREADEAD LG+  AFCGMFRCGLP R  RR 
Sbjct:    1 MADYESSDNGSKGVKASAAVAQGGKATRIRFLGRGGKEKQQQRVRMKGPLRSRAQERFDAGPSPQDTPGFLYIYCESGXXXX---XXXDKTREWKIGKTTLDPPERRMKQSAHNNRKTYTLRASWHVPWCGYVEKIVHLDLDDLKVVPGKEKSWDGGGREDGGTEWFRADIEVVEARVKLAIRMVAAREADEADLLGVQPAFCGMFRCGLPIRRRRRH 215
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5828.14268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT97_ECTSI8.570e-11368.32T5orf172 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JBR9_9PHAE3.450e-9266.97T5orf172 domain-containing protein n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5828contigL-elsbetiae_contig5828:2318..4237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSAP domain
Ec32 orthologEc-06_003600.1
Exons2
Model size1764
Cds size687
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5828.14268.1prot_L-elsbetiae_contig5828.14268.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5828 2651..3493 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816627.253971-UTR-L-elsbetiae_contig5828:2317..26501622816627.253971-UTR-L-elsbetiae_contig5828:2317..2650Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5828 2318..2650 +
1691683695.547798-UTR-L-elsbetiae_contig5828:2317..26501691683695.547798-UTR-L-elsbetiae_contig5828:2317..2650Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5828 2318..2650 +
1622816627.285461-UTR-L-elsbetiae_contig5828:3493..42371622816627.285461-UTR-L-elsbetiae_contig5828:3493..4237Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5828 3494..4237 +
1691683695.5789838-UTR-L-elsbetiae_contig5828:3493..42371691683695.5789838-UTR-L-elsbetiae_contig5828:3493..4237Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5828 3494..4237 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816627.2651522-CDS-L-elsbetiae_contig5828:2650..27021622816627.2651522-CDS-L-elsbetiae_contig5828:2650..2702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5828 2651..2702 +
1691683695.5591986-CDS-L-elsbetiae_contig5828:2650..27021691683695.5591986-CDS-L-elsbetiae_contig5828:2650..2702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5828 2651..2702 +
1622816627.2752433-CDS-L-elsbetiae_contig5828:2858..34931622816627.2752433-CDS-L-elsbetiae_contig5828:2858..3493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5828 2859..3493 +
1691683695.5691338-CDS-L-elsbetiae_contig5828:2858..34931691683695.5691338-CDS-L-elsbetiae_contig5828:2858..3493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5828 2859..3493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5828.14268.1

>prot_L-elsbetiae_contig5828.14268.1 ID=prot_L-elsbetiae_contig5828.14268.1|Name=mRNA_L-elsbetiae_contig5828.14268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=229bp
MTGFSHLKKKELVRRMEDYDSLDISKQGTKTTRSPTGRGKIMKTILGGKQ
KREQHRQRTRKKGPLRSRAQERFDVGPSAQDTPGFLYIYSEPGSESSGDG
SSGDRVKEWKIGKTILDPPERRMNQSAQNNRKVYKLHASWYVPWCGYVEK
IVHLDLDDFQVVPGKEKKWEGGGREDGGTEWFRTDIDIIEARVKLAIRMV
AAREADEADSLGISAFCGMFRCGLPKRW*
back to top

mRNA from alignment at L-elsbetiae_contig5828:2318..4237+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5828.14268.1 ID=mRNA_L-elsbetiae_contig5828.14268.1|Name=mRNA_L-elsbetiae_contig5828.14268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1920bp|location=Sequence derived from alignment at L-elsbetiae_contig5828:2318..4237+ (Laminarionema elsbetiae ELsaHSoW15)
CAGATCTGCGAGAGGAGTGCCGACGGCGGGGGCTCCAGAACTACACCAAA
CTTAGAAAGGACGAGCTGATCCGTTTGCTCAGAGGTGCGGCTGAAGATTT
CCTGGAGGAGAACGAGAAATGCGTACAGATGGCACGCCGCTCAAAAACAA
CGCTGCTGTTTTGACCTTCCCTCAAAGCTTTTCCAGAACTCTATTTTCCT
TTCTTTCCCCACATTCGTCCATAACTATTACGTTCCTGCAGACCCAAAAG
AAGGCTCGAGTAGAGCTGAAACCAATGGGACGCCTCGAGAGCGTACGCTC
GAAGAACTGCGCGCGGAGTGCCGGAAACGTGGGATGACCGGCTTCAGCCA
TCTAAAAAAAAAGGAGCTGGTTCGAAGGATGGAAGGTGCGTGAAAGGGAG
AAGGGAGAATAGCAAAAGCCCGGGAACACTCATATAAAGGTGGTAGCCTC
TGATAACTGCACATGCATAAGCGACTACCTTGCAAAAAAACAAATAAATC
TGTTCTTCCGACGCGTCTCCCTGAAACACGACCGGGAACAGACTATGATT
CGCTGGATATCAGCAAGCAGGGGACTAAGACCACTCGCTCTCCGACGGGA
CGGGGCAAGATAATGAAGACAATACTGGGCGGGAAACAAAAGAGAGAACA
GCATCGGCAGCGTACGAGAAAAAAGGGGCCGCTGCGTTCAAGAGCCCAGG
AGAGGTTCGACGTCGGCCCCTCTGCGCAAGACACTCCCGGATTCCTGTAC
ATCTACTCCGAGCCCGGCAGCGAAAGTAGCGGTGATGGCAGCAGCGGGGA
TCGTGTCAAAGAGTGGAAGATCGGCAAGACCATCCTGGACCCGCCCGAGA
GACGCATGAACCAATCCGCGCAAAACAACCGAAAAGTGTACAAGCTCCAC
GCGTCCTGGTATGTGCCGTGGTGCGGCTACGTGGAAAAAATCGTGCACCT
GGATCTGGACGACTTTCAGGTCGTCCCGGGAAAGGAGAAGAAGTGGGAAG
GTGGCGGGAGAGAGGACGGAGGAACCGAGTGGTTCCGGACAGATATTGAT
ATCATCGAGGCCAGGGTCAAGCTTGCCATCAGGATGGTTGCTGCGCGGGA
GGCAGACGAGGCGGACTCGTTGGGGATTTCCGCGTTCTGTGGCATGTTCC
GGTGCGGGCTTCCGAAGCGTTGGTAGCGGCGACAGGTTGTGGAAGTTTGA
CTTTTGATTTGGAATCGGCTTCATGGATGAAGTATCAATATATTTAAGTG
TGCGAGATGTGTTTTTGGTTGGGCGAGTGCTGGTGGTTGAGGCCCTCTGG
CAATGGTTAGGGTTGTTAGCTCCGGTGCTGTCTGAAATAGTGTATTGAAG
ACAATGACGACGCTACATGTCCGACGCGCGCTGCTGGTAACTTTCAAATC
CTTGGTTGATGTCGTGTGCGCGGGCGGTGGTACATGGCCCAAGACCGGAA
ACCCGCGACACCAAGCTGTGCTTACGGCGATATTCCTGTTACCGACAACC
TGCGTGCAGCCTAGAAACCGAAGGCGGCGGTGTAGGGGGCCCTGCTGACG
GTCTATCTAGAGCAGACTTCTCTCTGGGGCTCCTCGTGACGCAAGCGCGT
AGTCATTTTTCAATTTCACCGTTTGGTGTATAGACGTACAAAAGAATACT
TCTACAAGACGGAACCTCCGAGCTGGCTCGAAATGACACATGCCCCCCAC
ATATTTAGCGCGCTGCTGTGACTACATCAAGTGTTTGATCTGCAACAGTT
TGCTTTTCTCTGCTGAAGGGCCTCCGCGCCTTGTTTGTGTTGTATGTAGC
GGTCGGGAAGGCGGAATCTTTCAAGAAACTTTGGTGCTATAAGGTGACAA
GTCGAAGTTCAACTACTGCTTGTCAAACAGACATACATGTTTCACACTGG
GATTTTGGTGTCCAGGCGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5828:2318..4237+

>mRNA_L-elsbetiae_contig5828.14268.1 ID=mRNA_L-elsbetiae_contig5828.14268.1|Name=mRNA_L-elsbetiae_contig5828.14268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1374bp|location=Sequence derived from alignment at L-elsbetiae_contig5828:2318..4237+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGGCTTCAGCCATCTAAAAAAAAAGGAGCTGGTTCGAAGGATGGA
AGATGACCGGCTTCAGCCATCTAAAAAAAAAGGAGCTGGTTCGAAGGATG
GAAGACTATGATTCGCTGGATATCAGCAAGCAGGGGACTAAGACCACTCG
CTCTCCGACGGGACGGGGCAAGATAATGAAGACAATACTGGGCGGGAAAC
AAAAGAGAGAACAGCATCGGCAGCGTACGAGAAAAAAGGGGCCGCTGCGT
TCAAGAGCCCAGGAGAGGTTCGACGTCGGCCCCTCTGCGCAAGACACTCC
CGGATTCCTGTACATCTACTCCGAGCCCGGCAGCGAAAGTAGCGGTGATG
GCAGCAGCGGGGATCGTGTCAAAGAGTGGAAGATCGGCAAGACCATCCTG
GACCCGCCCGAGAGACGCATGAACCAATCCGCGCAAAACAACCGAAAAGT
GTACAAGCTCCACGCGTCCTGGTATGTGCCGTGGTGCGGCTACGTGGAAA
AAATCGTGCACCTGGATCTGGACGACTTTCAGGTCGTCCCGGGAAAGGAG
AAGAAGTGGGAAGGTGGCGGGAGAGAGGACGGAGGAACCGAGTGGTTCCG
GACAGATATTGATATCATCGAGGCCAGGGTCAAGCTTGCCATCAGGATGG
TTGCTGCGCGGGAGGCAGACGAGGCGGACTCGTTGGGGATTTCCGCGTTC
TGTGGCATGTTCCGGTGCGGGCTTCCGAAGCGTTGGTAGACTATGATTCG
CTGGATATCAGCAAGCAGGGGACTAAGACCACTCGCTCTCCGACGGGACG
GGGCAAGATAATGAAGACAATACTGGGCGGGAAACAAAAGAGAGAACAGC
ATCGGCAGCGTACGAGAAAAAAGGGGCCGCTGCGTTCAAGAGCCCAGGAG
AGGTTCGACGTCGGCCCCTCTGCGCAAGACACTCCCGGATTCCTGTACAT
CTACTCCGAGCCCGGCAGCGAAAGTAGCGGTGATGGCAGCAGCGGGGATC
GTGTCAAAGAGTGGAAGATCGGCAAGACCATCCTGGACCCGCCCGAGAGA
CGCATGAACCAATCCGCGCAAAACAACCGAAAAGTGTACAAGCTCCACGC
GTCCTGGTATGTGCCGTGGTGCGGCTACGTGGAAAAAATCGTGCACCTGG
ATCTGGACGACTTTCAGGTCGTCCCGGGAAAGGAGAAGAAGTGGGAAGGT
GGCGGGAGAGAGGACGGAGGAACCGAGTGGTTCCGGACAGATATTGATAT
CATCGAGGCCAGGGTCAAGCTTGCCATCAGGATGGTTGCTGCGCGGGAGG
CAGACGAGGCGGACTCGTTGGGGATTTCCGCGTTCTGTGGCATGTTCCGG
TGCGGGCTTCCGAAGCGTTGGTAG
back to top