mRNA_L-elsbetiae_contig581.14245.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig581.14245.1 vs. uniprot
Match: D8LQA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA3_ECTSI) HSP 1 Score: 772 bits (1994), Expect = 4.890e-247 Identity = 625/1383 (45.19%), Postives = 751/1383 (54.30%), Query Frame = 3
Query: 267 AGNGYRHD--GYAYDDQVDLDDDDAAGYQHGYGGGXXXXXXXXXXXXXXXXXXXXXXXXDSGAARRGGAPPEGRAVYAPPVPASINNRGGTGTSQYXXXXXXXXXPARRAGPPGATRFPNPSTAYGTHAYRSPSSPXXXXXXXXXXXXAGGSTRQHQGFGGVAGQLLDAAGHLSPAAKEVSGKGARY---------AASNDRAAARR---------------GLYAPSGGAAGEAPGAASSKGGYGLNLSVDHHSDDGRDDRFRGRGSSGSQGRGGTPEGFSQHXXXXXXXXXXXXXXXXXXXHHSRA-------------------------------------------------------------------GCWGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAP-RPPGKSLPWAVIEEAGQRQLGVPAEERRTRPKEEQERISPFDGCPIEGCPMADSSGIGVGWMARHLEQHTKVAMERPQKELYIRGTVAEILHDLCLDCEAPPSQRKFERKKMSRALFGMPQEGIGHLAGVMETIVTGDNKNPRVRRCALDLAVGGCEGASGEDTIVRCDLCKAWFHVTCGQVAIGDGMSTEDATDETLCRTCARMAIGATQGKDPTAAMQRQLALVREKSKKMLAFLEXXXXXXXXXXGPLEGVIDLNLSIGARGRTLNSRAPSGVDKKDTADAXXXXXXXXXXXXXVDGKTDAGAATGNNIINXXXXXXXXEGHGG---NYSRPASCAAAGCEQQSRTDSKYCCESCGVRTAEAEMSEAVRHSLEMRSGLDRARRVRETREIKARKHKLGIAMRKVEFPQVPAFGIKREAGLQTMTVRRHRLWQRLIEIGAYWEKVS-------SGSKNLSVNGKSAALMRXXXXXXXXXXXXXXXXXXXXXXXPGG--------SSAGARGSQVAGXXXXXXXXXXXXXXXXPAREVGDEATVETLPAKEVAGAAAAAGETTREAXXDTPRQ--ANGATGGDGGSAVASQAASTGAEGAEDGADRRVPSPSAGAT--------GNEKCTS--QATLXXXXXXXXXGQSASEARAADRGPTPMEV---EEESSAERGVEATADPESGSEKVWAYGVFDGLSVVWYRPPGGGEADQLSSKPQLEEYWRKTCAHDEVPGHFTFWAKDARPHWKRVDVDCSGEEVRPAKKPKVTAAXXXXXXXRQTAREGVASFTCAYCAEETGPLVTEHLEQCYRKVIAERNKRLKRATLRPLREGRRVPGGGSRPXXXXSVTGAVVAAPEEAAALNSPAAIGRQLLSRIVPYADFDELPDPTRFQLHQDLKGWKDSPSRLDFLFKELVRQRNAAIYELQALDREEAEVEANARHDWTADSLRCVPR 4034
AGNGY +D GY YD+ D DD D + QHG+G ++ RG P R VYAPP INN G G+SQY P+RR GPPGATR+PNPSTAY +Y P SP S RQ QGFGGVAGQLL+AAG LSP+ K SG A + AA +++AAR GLYAPSGG +GE PGA SS+G G D G + RFR RG S P ++ H RA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AP RPP L W IE AG+R+LGVPAEERRT+ E E +SPF GCPI CPM S GI V WMARHLE HTKVAME+PQKELYIR +VAEILH++CLD E P +QRKFER+KMSRAL P+ GIGHLAG++ET+VTGDNK+P VRRCA DLAVGGCEG + E TIVRCD C AW+HV+CGQ+ GDG+S+E+A +ETLCRTCAR+AIGA QGKDPTA +Q+QL+LVREK KML FLE G GV DL L+I R +++ GV KD G + A GN+ G+GG +RP CAAA C ++SR DSK+CC++CGV AEA +++A+RH +E +G+DR RR+RETRE+K RK ++G+AM+KVEFP+VP F +RE L + VR+ RLWQRLIEIGAYWEKVS + ++ + A XXX GG S++ + G QV XXXXXXXXXXXXX EA V KEV G XX T Q +NG G +GG A + A +G A + + S G G T A + G++A + +AA+ MEV + E+ + G+E + + W YG F V+WY PPGGGEAD+ +S QL+ Y R+ + VPG FTF KDA P W+RVD AK A GV +F C YC EETGP V+EHLE+CYRK A RN+RLK ATLRPLR+ + GG SR SVT V P AAL+SPAAIGRQLLSR + YA+FD LPDP+RFQLH DLKGW++SPSRLDFL+KELVRQRNAAIYELQALDREEAE+E + RHDW D LR +PR
Sbjct: 2 AGNGYGNDRGGYVYDE--DDDDGDYSAQQHGHGSRNFADRGYSSYDGRYDINNAYQTTRYDPSSPRGLGGPHDRGVYAPPTATIINNNRGVGSSQY---------PSRRGGPPGATRYPNPSTAYDNFSY--PPSPRPPP-----------SPRQPQGFGGVAGQLLNAAGQLSPSNKRASGGRAVFDDEVTIGPAAAGGEKSAARLKSTSAXXXXXXASRFGLYAPSGGGSGEIPGAGSSRGDDG---------DGGGNARFRDRGRSQIAKAPTNP----RYQERTRNSFEERDQQMREQKHQQRAPHQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSRPP---LSWITIERAGKRRLGVPAEERRTKLGGENETVSPFQGCPIHDCPMGSSDGISVSWMARHLESHTKVAMEKPQKELYIRSSVAEILHEMCLDSEVPRAQRKFERRKMSRALLDTPRAGIGHLAGMIETVVTGDNKSPHVRRCAHDLAVGGCEGITREGTIVRCDKCMAWYHVSCGQMVRGDGISSEEAREETLCRTCARIAIGAPQGKDPTATLQKQLSLVREKRTKMLEFLEEDVET-----GAPCGVFDLPLNI----RDVSTAG--GVGPKD-------------------GNANGPDAGGNS----------NGGNGGVDKRDNRPP-CAAASCGRESRQDSKFCCDACGVLHAEAFLAKAIRHHVEESAGIDRGRRLRETRELKTRKQQVGLAMKKVEFPRVPGFKTERETALHALVVRKCRLWQRLIEIGAYWEKVSGSRVGVLAATRTAAQTSSRKATAXXXXSVTASGAVDPALSRSAPERLAGGRDRGGVIASASSSGGVQVELDVGXXXXXXXXXXXXXXXXXXXXEAEVSGA-GKEVVGXXXXXXXXXXXXXXGTEGQGASNGCVGWEGGGAK--KRAREDGDGPPQQAAKSLKQTSNGEAASGIDVGGGGAAITEPPSAAVAMGAQSKGKGKAALDPQAAESPTAAMEVSSADPEAEIDTGLEVPDTMAEIAGQAWTYGSFGKERVLWYCPPGGGEADRCTSSEQLQAYLRERYGNGRVPGQFTFSGKDAPPQWERVDARRPDNGSLIAKDKDKAAVPPPPSG-------GVQNFMCVYCGEETGPWVSEHLERCYRKTTAMRNERLKHATLRPLRDNHFLQGG-SR-LGAASVTEPVSVPPS--AALDSPAAIGRQLLSRRIAYANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAIYELQALDREEAELEVHLRHDWMKDDLRSIPR 1289
BLAST of mRNA_L-elsbetiae_contig581.14245.1 vs. uniprot
Match: A0A6H5L313_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L313_9PHAE) HSP 1 Score: 716 bits (1848), Expect = 3.780e-226 Identity = 582/1307 (44.53%), Postives = 703/1307 (53.79%), Query Frame = 3
Query: 501 VPASINNRGGTGTSQYXXXXXXXXXPARRAGPPGATRFPNPSTAYGTHAYRSPSSPXXXXXXXXXXXXAGGSTRQHQGFGGVAGQLLDAAGHLSPAAKEVSGKGARY---------AASNDRAAARR---------------GLYAPSGGAAGEAPGAASSKGGYGLNLSVDHHSDDGRDDRFRGRGSS-------GSQGRGGTPEGFSQHXXXXXXXXXXXXXXXXXXXHHSRAGCWGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPRPPGKS---------------------------------------------------------------------LPWAVIEEAGQRQLGVPAEERRTRPKEEQERISPFDGCPIEGCPMADSSGIGVGWMARHLEQHTKVAMERPQKELYIRGTVAEILHDLCLDCEAPPSQRKFERKKMSRALFGMPQEGIGHLAGVMETIVTGDNKNPRVRRCALDLAVGGCEGASGEDTIVRCDLCKAWFHVTCGQVAIGDGMSTEDATDETLCRTCARMAIGATQGKDPTAAMQRQLALVREKSKKMLAFLEXXXXXXXXXXGPLEGVIDLNLSIGARGRTLNSRAPSGVDKKDTADAXXXXXXXXXXXXXVDGKTDAGAATGNNIINXXXXXXXXEGHGG---NYSRPASCAAAGCEQQSRTDSKYCCESCGVRTAEAEMSEAVRHSLEMRSGLDRARRVRETREIKARKHKLGIAMRKVEFPQVPAFGIKREAGLQTMTVRRHRLWQRLIEIGAYWEKVSSGSKNLSVNGKSAALM---RXXXXXXXXXXXXXXXXXXXXXXXP---------GGSSAGARGSQVAGXXXXXXXXXXXXXXXXPAREVGDEATVETLPAKEVAGAAAAAGETTREAXXDTPRQ--ANGATGGDGGSAVASQAASTGAEGAEDGADRRVPSPSAG--ATGNEKCTSQATLXXXXXXXXXG-------QSASEARAADRGPTPMEV---EEESSAERGVEATADPESGSEKVWAYGVFDGLSVVWYRPPGGGEADQLSSKPQLEEYWRKTCAHDEVPGHFTFWAKDARPHWKRVDVDCSGEEVRPAKKPKVTAAXXXXXXXRQTAREGVASFTCAYCAEETGPLVTEHLEQCYRKVIAERNKRLKRATLRPLREGRRVPGGGSRPXXXXSVTGAVVAAPEEAAALNSPAAIGRQLLSRIVPYADFDELPDPTRFQLHQDLKGWKDSPSRLDFLFKELVRQRNAAIYELQALDREEAEVEANARHDWTADSLRCVPR 4034
V INN G G+SQ+ P+RR GPPGATR+PNPSTAY +Y P SP XXXX RQ QGFGGVAGQLL+AAG LSP+ K SG A + AA +++AAR GLYAPSGG +GE PGA SS+G G D G DRFR RG S + + GT + F + H +A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +PRPP L W IE AG+R+LGVPAEERR E E +SPF GCPI CPM S GI V WMARHLE HTKVAME+PQKELYIR +VAEILH++CLD E P +QRKFER+KM+RAL P+ GIGHLAGVMET+VTGDNK+P VR + G CEG + E TIVRCD C AW+HV+CGQ+ GDG+S+E+A +ETLCR CAR+ IGA QGKDPTA +Q+QL+LVREK KML FLE G GV DL L+I R +N+ GV+ KD G AA GN+ G+GG +RP CAAA C ++SR DSK+CC++CGV AEA +++A+RH +E +G+DR RR+RETRE+K RK ++G+AM+KVEFP+VP F +RE L + RR RLWQRLIEIGAYWEKVS + K+AA + XXXXXXXXXX P GGS A GS E XX Q +N G +GG A + A G +G A + S G A+G + A + G ++A + +AA+ +V + E+ ++G+E + K W YG FD V+WY PPGG EAD+ +++ QL+ Y R+ + VPG FTF KDA PHW+RVD C AK A GV +FTC YC EETGP V+EHLE+CYRK A RN+RLK ATLRPL + + GG SR SVT V P A L+SPAAIGRQLLSR + YA+FD LPDP+RFQLH DLKGW++SPSRLDFL+KELVRQRNAAIYELQALDREEAE+E + RHDW D LR +PR
Sbjct: 53 VATIINNNRGVGSSQH---------PSRRGGPPGATRYPNPSTAYDNFSY--PPSPRPXXXX-----------RQPQGFGGVAGQLLNAAGQLSPSNKRASGGRAVFDDEVTIGPAAAGGEKSAARLKSTSAXXXXXXXSRFGLYAPSGGGSGEIPGAGSSRGDLG---------DGGGSDRFRDRGRSQIARAPTNPRYQDGTRKSFEERDEQVREQKHQQRAP-----HQRKASA---PPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPRPPAAPADPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPSRPPLSWITIERAGKRRLGVPAEERRMMLGGENETVSPFRGCPIHDCPMGSSDGISVSWMARHLESHTKVAMEQPQKELYIRSSVAEILHEMCLDSEVPRAQRKFERRKMARALLDTPRAGIGHLAGVMETMVTGDNKDPHVRHEPQE---GXCEGITREGTIVRCDKCMAWYHVSCGQMVRGDGISSEEAREETLCRACARITIGAPQGKDPTATLQKQLSLVREKRTKMLEFLERDVET-----GTPCGVFDLPLNI----RDVNTAG--GVELKD-------------------GNAKGPAAGGNS----------NGGNGGVDMRDNRPP-CAAASCGRESRQDSKFCCDACGVLHAEAFLAKAIRHHVEESAGIDRGRRLRETRELKTRKQQVGLAMKKVEFPRVPGFKTERETALHGLVARRCRLWQRLIEIGAYWEKVSGSRVGVLAATKTAAQTSSRKAXXXXXXXXXXSGAFDPALSRSAPQRQTGVRDRGGSIASVSGSGGIQVELDVGGCSIAAAAKNDTAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGASNICVGWEGGGAK--KRAREGGDGPSQQAANSLKQTSNGEAASGIDVGGGSAAIPETPSAAAMGAHSKGKGKAALDPQAAESTTAATDVSSADPEAEIDKGLEGPDTTAEIAGKAWTYGSFDKERVLWYCPPGGREADRCTNREQLQAYLRERYGNGRVPGQFTFSGKDAPPHWERVDAHCPDNGSLIAKHKDKAAVPPSPSG-------GVQNFTCVYCGEETGPRVSEHLERCYRKTTAMRNERLKHATLRPLPDNHFLQGG-SR-LGAASVTEPVSLPPS--ACLDSPAAIGRQLLSRRIAYANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAIYELQALDREEAELEVHLRHDWMKDDLRSIPR 1263 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig581.14245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig581.14245.1 >prot_L-elsbetiae_contig581.14245.1 ID=prot_L-elsbetiae_contig581.14245.1|Name=mRNA_L-elsbetiae_contig581.14245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1268bp MAGRNSPRAGNGYRHDGYAYDDQVDLDDDDAAGYQHGYGGGGFGSRGYSSback to top mRNA from alignment at L-elsbetiae_contig581:4490..17186+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig581.14245.1 ID=mRNA_L-elsbetiae_contig581.14245.1|Name=mRNA_L-elsbetiae_contig581.14245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=12697bp|location=Sequence derived from alignment at L-elsbetiae_contig581:4490..17186+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig581:4490..17186+ >mRNA_L-elsbetiae_contig581.14245.1 ID=mRNA_L-elsbetiae_contig581.14245.1|Name=mRNA_L-elsbetiae_contig581.14245.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=7608bp|location=Sequence derived from alignment at L-elsbetiae_contig581:4490..17186+ (Laminarionema elsbetiae ELsaHSoW15)back to top |