mRNA_L-elsbetiae_contig5805.14240.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5805.14240.1
Unique NamemRNA_L-elsbetiae_contig5805.14240.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5805.14240.1 vs. uniprot
Match: D8LIL5_ECTSI (Cyclin D1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIL5_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 1.470e-109
Identity = 152/171 (88.89%), Postives = 164/171 (95.91%), Query Frame = 1
Query:    1 QADEDSPSVLFAGRYEEAECNMPMISELADATEMSLTTPIVTRGELDLVQNRLQWDVSRVTAMHFLGYYTSQGVTMPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQDYQFQRYKPSHIAAASILAARRALCIKPVWRDELTELTGYKLEDVVECGEELWNFYEKMFPSHK 513
            +ADEDSPSVL+ GRYEEAECNMPMISELADATEMSLTT IVTRGELDLVQNRL+WDVSRVTAMHFLGYYTSQGVT PDDTCQGRRLVEKVVTYMNKYVDFFANLCQQ YQFQRYKPSHIAAA+IL ARRALCIKP+WRDELT+LTGYKLE++ +CGE+LW+FYEKMFP H+
Sbjct:  113 KADEDSPSVLYKGRYEEAECNMPMISELADATEMSLTTSIVTRGELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAAAAILTARRALCIKPMWRDELTDLTGYKLEEISDCGEDLWHFYEKMFPLHR 283          
BLAST of mRNA_L-elsbetiae_contig5805.14240.1 vs. uniprot
Match: A0A835ZBR6_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBR6_9STRA)

HSP 1 Score: 217 bits (552), Expect = 1.580e-68
Identity = 107/160 (66.88%), Postives = 122/160 (76.25%), Query Frame = 1
Query:   34 AGRYEEAECNMPMISELADATEMSLTTPIVTRGELDLVQNRLQWDVSRVTAMHFLGYYTSQGVTMPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQDYQFQRYKPSHIAAASILAARRALCIKPVWRDELTELTGYKLEDVVECGEELWNFYEKMFPSHK 513
            A +YEEAE NMPM+SE+A A E  LTT +VT+GEL L +  L WD+SRVTAMHFLGYY  QGVT   D CQGR LV KV  YM KYV+FFANLCQQDY FQR++PS IAAASILAARRALCI P+WR EL  LTG    D+  C EE+W FYE MFP+H+
Sbjct:   66 AAKYEEAERNMPMVSEMAIAAETRLTTGMVTQGELSLARG-LGWDISRVTAMHFLGYYLHQGVTFLSDECQGRALVTKVTRYMKKYVEFFANLCQQDYSFQRHRPSTIAAASILAARRALCIAPLWRPELERLTGCAPRDIQACAEEVWAFYEAMFPTHQ 224          
BLAST of mRNA_L-elsbetiae_contig5805.14240.1 vs. uniprot
Match: A0A7S1YXT2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YXT2_TRICV)

HSP 1 Score: 146 bits (368), Expect = 4.790e-40
Identity = 72/165 (43.64%), Postives = 105/165 (63.64%), Query Frame = 1
Query:   25 VLFAGRYEEAECNMPMISELADATEM---SLTTPIVTRGELDLVQNRLQWDVSRVTAMHFLGYYTSQGVTMPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQDYQFQRYKPSHIAAASILAARRALCIKPVWRDELTELTGYKLEDVVECGEELWNFYEKMFPSH 510
            +  A +YEEAE + P I EL   T++     T      GEL ++Q+ L W +  +  +H +GYY S+G T  DDT QGR L+EK+  Y+ KYV+FF NL  Q+Y FQ+Y P+H+AAA +LA+R AL ++P WR EL  +TGY+  ++V+    +W +YE+ FP H
Sbjct:  120 ISVAAKYEEAEEHCPPIPELLQLTKLCNSGHTALSFREGELAVLQH-LGWRLRAIPPLHIVGYYLSKGATFEDDTWQGRALIEKIPKYVKKYVEFFCNLTLQEYSFQQYLPTHLAAAILLASRVALQLEPRWRPELARVTGYEDHEIVDVFTHVWRYYEEQFPGH 283          
BLAST of mRNA_L-elsbetiae_contig5805.14240.1 vs. uniprot
Match: A0A1E7FL21_9STRA (Cyclin-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FL21_9STRA)

HSP 1 Score: 144 bits (364), Expect = 5.470e-40
Identity = 74/165 (44.85%), Postives = 105/165 (63.64%), Query Frame = 1
Query:   25 VLFAGRYEEAECNMPMISELADATEMSLT--TPIVTR-GELDLVQNRLQWDVSRVTAMHFLGYYTSQGVTMPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQDYQFQRYKPSHIAAASILAARRALCIKPVWRDELTELTGYKLEDVVECGEELWNFYEKMFPSH 510
            +  A +YEEAE + P I EL   T++     TP+  R GEL++++  L W +  V  +H +GY+ ++G    +DT QGR L+EK+  YM KY DFF NL  Q+Y FQ+Y PSH+AAA ILA+R AL I+P WR EL  LTGY   ++ +    +W++YE+ FP H
Sbjct:   74 ISVAAKYEEAEEHCPPIPELLRLTKLGNAGHTPLSFRDGELEVLRY-LNWQLRAVPPIHVVGYFLAKGAVFYEDTWQGRSLIEKIPKYMKKYADFFCNLTLQEYSFQQYLPSHLAAAVILASRVALNIEPRWRPELVRLTGYSEIEITDAFHHVWSYYEEQFPGH 237          
BLAST of mRNA_L-elsbetiae_contig5805.14240.1 vs. uniprot
Match: B8BTM7_THAPS (Cyclin N-terminal domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTM7_THAPS)

HSP 1 Score: 146 bits (368), Expect = 8.070e-40
Identity = 71/162 (43.83%), Postives = 106/162 (65.43%), Query Frame = 1
Query:   34 AGRYEEAECNMPMISELADATEMSL---TTPIVTRGELDLVQNRLQWDVSRVTAMHFLGYYTSQGVTMPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQDYQFQRYKPSHIAAASILAARRALCIKPVWRDELTELTGYKLEDVVECGEELWNFYEKMFPSH 510
            A +YEEAE + P I +L   T++S    T+     GE+ +++N L W +  +  +H +GYY S+G T  DD  QGR L+EK+  Y+ KY +FF NL  Q+Y FQ+Y P+H+AAA +LA+R AL I P WR EL ELTG++ +++ E  + +W++YE+ FP H
Sbjct:  146 AAKYEEAEEHCPHIPDLLRLTKLSSVGHTSLSFREGEVQVLRN-LGWKLRAIPPLHVIGYYLSKGATFVDDAWQGRSLIEKIPKYIKKYAEFFCNLTLQEYSFQQYLPTHLAAAILLASREALQISPRWRPELEELTGFEEKEIGEAFQHVWSYYEEQFPGH 306          
BLAST of mRNA_L-elsbetiae_contig5805.14240.1 vs. uniprot
Match: A0A7S0A123_9STRA (Hypothetical protein n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0A123_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.670e-38
Identity = 67/160 (41.88%), Postives = 105/160 (65.62%), Query Frame = 1
Query:   40 RYEEAECNMPMISELADATEMSL---TTPIVTRGELDLVQNRLQWDVSRVTAMHFLGYYTSQGVTMPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQDYQFQRYKPSHIAAASILAARRALCIKPVWRDELTELTGYKLEDVVECGEELWNFYEKMFPSH 510
            +YEEAE + P I +L   T++++   T+     GELD+++  L W +  +  +HF+GY+ ++G    DDT QGR L+EK+  Y+ KY +FF NL  Q+Y FQ+Y PS +AAA +LA+R AL ++P WR EL  LTGY+ +D+    + +W++Y++ FP H
Sbjct:    1 KYEEAEEHCPPIPDLLQLTKLNVAGHTSYSFREGELDVLRY-LGWRLRAIPPIHFIGYFLAKGSVFVDDTWQGRPLIEKIPKYVKKYTEFFCNLTLQEYSFQQYLPSLLAAAILLASRTALQLEPRWRPELVRLTGYEEQDLSSAFQHVWSYYDEQFPGH 159          
BLAST of mRNA_L-elsbetiae_contig5805.14240.1 vs. uniprot
Match: A0A7S3L9W8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L9W8_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.170e-37
Identity = 72/166 (43.37%), Postives = 106/166 (63.86%), Query Frame = 1
Query:   31 FAGRYEEAECNMPMISELADATEM------SLTTPIVTRGELDLVQNRLQWDVSRVTAMHFLGYYTSQGVTMPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQDYQFQRYKPSHIAAASILAARRALCIKPVWRDELTELTGYKLEDVVECGEELWNFYEKMFPSH 510
             A +YEEAE + P I +L   T++      SLT      GE+ ++++ L W +    A+H +GYY S+G    DDT QGR L+EK+  Y+ KY +FF NL  QDY+FQ+Y P+ +AAA +LA+R AL ++P WR EL +LTGY+ E++V+    +W +YE+ FP H
Sbjct:  170 IAAKYEEAEEHCPPIPDLLSLTKLASAGHNSLT---FREGEVQVLKH-LGWRLRAFPAIHVIGYYLSKGACFEDDTWQGRGLIEKIPRYVKKYAEFFCNLTLQDYEFQQYLPTQLAAAILLASRVALQLEPRWRPELVQLTGYEEEEIVDIFHHVWAYYEEQFPGH 331          
BLAST of mRNA_L-elsbetiae_contig5805.14240.1 vs. uniprot
Match: A0A1Z5JHV1_FISSO (Cyclin N-terminal domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHV1_FISSO)

HSP 1 Score: 136 bits (342), Expect = 5.660e-36
Identity = 68/165 (41.21%), Postives = 102/165 (61.82%), Query Frame = 1
Query:   25 VLFAGRYEEAECNMPMISELADATEMSLT---TPIVTRGELDLVQNRLQWDVSRVTAMHFLGYYTSQGVTMPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQDYQFQRYKPSHIAAASILAARRALCIKPVWRDELTELTGYKLEDVVECGEELWNFYEKMFPSH 510
            +  A +YEEAE + P I EL   T++S +   +     GE+++++ RL W +    A+H +GY  ++G    DD  QGR L+ K+  Y+ KY +FF NL  QDY FQ+Y+PS +AAA+++A+R AL I+P WR EL   TGY   D++     LW++YE+ FP H
Sbjct:  144 ITVAAKYEEAEEHCPHIPELLRFTKLSQSGYDSLAFRDGEVEILK-RLGWQLRAFPALHVVGYILAKGACFVDDAWQGRHLIPKIPRYLKKYAEFFCNLALQDYSFQQYRPSILAAAAVMASRVALQIEPKWRPELVRRTGYDEFDILPIFNHLWSYYEEQFPGH 307          
BLAST of mRNA_L-elsbetiae_contig5805.14240.1 vs. uniprot
Match: A0A7S3QJF9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJF9_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.050e-35
Identity = 68/165 (41.21%), Postives = 100/165 (60.61%), Query Frame = 1
Query:   25 VLFAGRYEEAECNMPMISELADATEMSL---TTPIVTRGELDLVQNRLQWDVSRVTAMHFLGYYTSQGVTMPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQDYQFQRYKPSHIAAASILAARRALCIKPVWRDELTELTGYKLEDVVECGEELWNFYEKMFPSH 510
            +  A +YEEAE + P I +L   T +S    T+     GE++ ++  L W +  +  +HF+GY+ ++G    DDT Q R L+EK+  Y+ KY DFF NL  Q+Y FQ+Y PS +AAA +LA+R AL ++P WR ELT LTG +   ++     LW +YE+ FP H
Sbjct:  154 ISIAAKYEEAEEHCPPIPDLLQLTRLSQAGHTSLSFRDGEVECLKF-LGWRLRAIPPIHFIGYFLAKGAIFQDDTWQDRNLIEKIPKYVKKYADFFCNLTLQEYSFQQYLPSELAAAILLASRVALQLQPRWRPELTTLTGQEESQIIHIFNHLWGYYEEQFPGH 317          
BLAST of mRNA_L-elsbetiae_contig5805.14240.1 vs. uniprot
Match: A0A7S0FMS6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FMS6_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.310e-35
Identity = 58/135 (42.96%), Postives = 89/135 (65.93%), Query Frame = 1
Query:  112 TPIVTR-GELDLVQNRLQWDVSRVTAMHFLGYYTSQGVTMPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQDYQFQRYKPSHIAAASILAARRALCIKPVWRDELTELTGYKLEDVVECGEELWNFYEKMFPSHK 513
            TP+  R GE++++++ L W +  + A+H +GYY S+G    DDT QGR L+EK+  Y+ KY DFF NL  Q+Y FQ+Y PS +AAA ++A+R AL + P WR E+T LTGY+  ++    + +W +Y + FP  +
Sbjct:    6 TPLAFRDGEVEVLKH-LNWTLRAIPALHVVGYYLSKGAVFVDDTWQGRDLIEKIPRYVKKYADFFCNLTMQEYSFQKYLPSQLAAAILMASREALSVAPRWRPEMTALTGYEESEITPIFDHVWKYYAEQFPDRQ 139          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5805.14240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIL5_ECTSI1.470e-10988.89Cyclin D1 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A835ZBR6_9STRA1.580e-6866.88Cyclin-like protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S1YXT2_TRICV4.790e-4043.64Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1E7FL21_9STRA5.470e-4044.85Cyclin-like protein n=1 Tax=Fragilariopsis cylindr... [more]
B8BTM7_THAPS8.070e-4043.83Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A7S0A123_9STRA1.670e-3841.88Hypothetical protein n=1 Tax=Rhizosolenia setigera... [more]
A0A7S3L9W8_9STRA1.170e-3743.37Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1Z5JHV1_FISSO5.660e-3641.21Cyclin N-terminal domain-containing protein n=2 Ta... [more]
A0A7S3QJF9_9STRA1.050e-3541.21Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S0FMS6_9STRA1.310e-3542.96Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5805contigL-elsbetiae_contig5805:5647..11814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue1.9e-33
Seed eggNOG ortholog35128.Thaps21159
Preferred nameCCNJL
KEGG koko:K06627,ko:K13983,ko:K21771
KEGG Pathwayko04068,ko04110,ko04152,ko04218,ko04914,ko05161,ko05165,ko05169,ko05203,map04068,map04110,map04152,map04218,map04914,map05161,map05165,map05169,map05203
KEGG ModuleM00693
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000278,GO:0001932,GO:0003006,GO:0003674,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0008150,GO:0009653,GO:0009790,GO:0009987,GO:0010468,GO:0016538,GO:0019207,GO:0019220,GO:0019222,GO:0019887,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030234,GO:0031323,GO:0031399,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0042325,GO:0043549,GO:0044703,GO:0045448,GO:0045859,GO:0048468,GO:0048477,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051174,GO:0051246,GO:0051338,GO:0051704,GO:0060255,GO:0060966,GO:0060968,GO:0065007,GO:0065009,GO:0080090,GO:0098772
EggNOG free text desc.Cyclin_C
EggNOG OGs2XASD@2836,COG5024@1,KOG0654@2759
Ec32 ortholog descriptioncyclin D1
Ec32 orthologEc-11_004300.1
EC3.6.4.13
COG Functional cat.D
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036
Exons6
Model size513
Cds size513
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5805.14240.1prot_L-elsbetiae_contig5805.14240.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5805 5647..11814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816624.6627626-CDS-L-elsbetiae_contig5805:5646..57581622816624.6627626-CDS-L-elsbetiae_contig5805:5646..5758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5805 5647..5758 -
1691683693.634767-CDS-L-elsbetiae_contig5805:5646..57581691683693.634767-CDS-L-elsbetiae_contig5805:5646..5758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5805 5647..5758 -
1622816624.6750946-CDS-L-elsbetiae_contig5805:6666..68001622816624.6750946-CDS-L-elsbetiae_contig5805:6666..6800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5805 6667..6800 -
1691683693.646639-CDS-L-elsbetiae_contig5805:6666..68001691683693.646639-CDS-L-elsbetiae_contig5805:6666..6800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5805 6667..6800 -
1622816624.6869314-CDS-L-elsbetiae_contig5805:7513..75641622816624.6869314-CDS-L-elsbetiae_contig5805:7513..7564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5805 7514..7564 -
1691683693.655725-CDS-L-elsbetiae_contig5805:7513..75641691683693.655725-CDS-L-elsbetiae_contig5805:7513..7564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5805 7514..7564 -
1622816624.6975553-CDS-L-elsbetiae_contig5805:8156..82201622816624.6975553-CDS-L-elsbetiae_contig5805:8156..8220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5805 8157..8220 -
1691683693.6656609-CDS-L-elsbetiae_contig5805:8156..82201691683693.6656609-CDS-L-elsbetiae_contig5805:8156..8220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5805 8157..8220 -
1622816624.7095053-CDS-L-elsbetiae_contig5805:8641..87511622816624.7095053-CDS-L-elsbetiae_contig5805:8641..8751Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5805 8642..8751 -
1691683693.6766365-CDS-L-elsbetiae_contig5805:8641..87511691683693.6766365-CDS-L-elsbetiae_contig5805:8641..8751Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5805 8642..8751 -
1622816624.7197654-CDS-L-elsbetiae_contig5805:11772..118141622816624.7197654-CDS-L-elsbetiae_contig5805:11772..11814Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5805 11773..11814 -
1691683693.698456-CDS-L-elsbetiae_contig5805:11772..118141691683693.698456-CDS-L-elsbetiae_contig5805:11772..11814Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5805 11773..11814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5805.14240.1

>prot_L-elsbetiae_contig5805.14240.1 ID=prot_L-elsbetiae_contig5805.14240.1|Name=mRNA_L-elsbetiae_contig5805.14240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=171bp
QADEDSPSVLFAGRYEEAECNMPMISELADATEMSLTTPIVTRGELDLVQ
NRLQWDVSRVTAMHFLGYYTSQGVTMPDDTCQGRRLVEKVVTYMNKYVDF
FANLCQQDYQFQRYKPSHIAAASILAARRALCIKPVWRDELTELTGYKLE
DVVECGEELWNFYEKMFPSHK
back to top

mRNA from alignment at L-elsbetiae_contig5805:5647..11814-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5805.14240.1 ID=mRNA_L-elsbetiae_contig5805.14240.1|Name=mRNA_L-elsbetiae_contig5805.14240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6168bp|location=Sequence derived from alignment at L-elsbetiae_contig5805:5647..11814- (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGGACGAGGACTCACCGTCGGTTTTGTTTGCGGGCAGGGTGAGTGG ATGGCATGGGAATTTTTTTTAAGTGTGCGTGTAAATTCGTATGTATGTGG ATGTCTTTTCAATAATATACTAAATCATAGTGATGTAACCAGGTGTGTGG TTTGTTTTACTGAAAGAAATAAAAAACGTCATACCATATGAGACATGAAA AACATCATAACATACCAGTTTGGTGCGTAACCCTTGCACCATGTACTGTG TACCTCCGAAACCTGTTTTTTTTTTTTTTTGAAGTATACTTTTATGATTC TGTACTACCGAGTACGATTTGTCCCACCACGCATCAATAAACATCGAGTA TCGGATGAGGCACGGGGGGTTGAACTCTTCCCGCACATACCCCTGTCGAC TACTAACTTGTGCCCTTTTTTCCATATTCTACGGTACCCCTGTCGTGCCC ATCTGCGAAGTTGGCTGTAGCACTATTTAGACACGCTACTTCAAAAACAC AGCACTAGAAAGCAAATGTTGCCCTATCGCGGTTACAGCCCGGCCAGTAC CGACCTTAGCCATGCCTAGTTGCTTAGCGGTGCTGTACCACTGCAGACTC TTGCCTCTGTTTTCCAAGCTGAGTATAAATTACCTTTGAGCTTGCCATTA GTTCGCTCGCCGTTTGTGTTGGCGATCGCGACCAACCAGCCCCCCTCTCA ACCCCCCCCCCCTCGTTTTCGGCTTTCCGACGCTCTTGTGAACATTCCCA CCCACCCATCCGTCCCTGAAACGATGAACACGCAGGCGACGGACATAGAG CTTGGCTTCCCGGCGGACTTGATTATCGAGTACTGGAAGCGGAAGGAGGA CAGCAAGTTCAACAAGAGGATGGCCAGAAGCACCAAGCCTCCGCCGACGT ACCCCCCGGTGAGCGATTCTCGAACCCCCCCCTCGATGCGCGAGCGAGGG AGCTCTTGTACATGTCCGTTAGTCGTCAGTGGAATCGTGAAGTCCAGCAG GCGCCTCGTTGATATCATGTGGTGCCTTTTCATCTTTTAGACGGATGACA CCAGAGTATGTTGTACATAATTACCGTAGGTGACATAAGATAAGACACCC CCTGGGCCGATAAGCTCAAGTACTTCACAGGAAGCAGAGCGTCAGTCCCG AAAAGGGCGGCGTTGGAAAGATCTCGTCGAGAGCTTTCCGAAAATATGTC TTTTGTGGTTAGAATCGTATTCGTTGCGGAGTAACCAAGCTTTCAATATC GATCCAGGGGGTGTTTTATCTCATGTACACCTTGCGTCTCCTGCGCACGG GGTTTTTGATGCTCAGACCGGGGATGGACTGTCGGCGCGAAATCCGCGGG TCGCCACTCCTGCCCTCCTGCCCCGCGCCCCGCGCACCACGCCGCCGGAC ACCCTTCCGTGCCCCCCCCCCCCCTCATCTTATCTCCGTCGCCGCCCCGT CTTTTGCCTGCCTGCGTGTCGGACGCTTGTCTTGTATGTATTGCCGCAGC ACCGACGGTACATGGTCGACTGGATAAGTGAGGTCGGGGAACAGCTGGAC CTGCAGGTGAGAGCCACACGAGAGAAAAGTGGATACTTTGTAGACTAAGC AACTTTTCGGGCGAAGTCGTGTCATGCTTGAAGTATGTACATCTAGGCGG GTCGACACAGGCACGTCTTATCTCTTCGTTGTATTCTAGTACACACATAC ATAGCGCCGCCGCTGCTGCTGCGCTGCTGCCGCTTCTGTTGCTGCTGCGC TGCTCCACTGCTCCGCGAAGCTTGTTCATCCACTCCTATTTTAATGGTTT TGCTACAATATCGGTAGCGTATTGGTTTGCGCGTGACAGCCCCTCTCCAC GAGCACGCTCTTGGTAGTGCACGCCTCTTTGGTGTAGGCGGGTGATATAT ACTCTGTCGCGTTGGAAATGATGATTCGTTTGTCAATGGTGGAAGGGCTC GGGGTTGAGTACACCCGCCAGCCTCTCAACGCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCAC CCGCGCCCCCCCCCCCCCCTCCCCCCGCCCGCCAGNNNNNNNNNNCTCTC CCCACCCACTCATTTCTGGTAAAAAGACGGTGACGATTCACTCTGCCGTC TCTTTCCTGGATGAGCTGATGGTGCTTTCCGACTACAGCACGAGAGATTG GCACCTCTACGCGGTGTGCTGCCTCAACATAGCTGGTGAGAGAAAGAGAG AGAGAGAGATGGATGGGTGTATTTTTAGACAGAGACAGACATGGGTTTTC GATCTGCCGCTCTTATTGGGACTTCTCGTTTTTTCTTCAATGTCCGTCAC CCGATAGGTGGTTGTTTCTATCTAGCCTAGCCTGTCACGCGCAGGCTGCT GGTTGCTGCCCTTGTCTCGTCTGCCCTTGTTGCTCTGTAGCTTTCGCGAG CTCCCGACCCCAACATGGCAGACGAGCGAGCCGAGCCTCCAAATAGCGAA TTATGCTTGTACCCATTGTCGCGGCTGTATCTTGGTCTCTCCTCCCGCGC TGTCTGGTTGAGTTACATACATATAGCCGCGATTGCACGCACACACGTGT GGAGACTACTGCTATTTCTCGAACGTCACCCGTTCGGTCTTAAGAGGGTT CCATGGCATCCTGAACCGGGGGGGGGGGGGGGGGTATTTGTTTGCATCAA CCGCAGTAGCAAGCAAGACCCAAACTATTTTGGCTGGGGGCGGTGAGACG TGAGTGTCTCTACGGCAGGCCCCCCGCCAACAATGGTTGAGTCTGAAATC TGTTTCTGTATCGAAATGATTACCATAACTCGTGAATAGCACCCACCCCG TATCAGGTTACCGTCGACAGACAACGCTCGTGTGCGTGCGTGCGTGCGTG CGTGCGTGCATGACAAACGACGCTCGTGTGCATGTGCACTGCTGCTGTGA TGAGTATTGCCTGTCGTTGTGGTTCTGAACGGCCCTGGCCCCCCCCATCA CGCCGTCGACGTCTCGTACCGCACAACGCCCCCCCCCCCCCCCCTCCCCC CCCTCCAGCCAAGTACGAGGAGGCGGAGTGCAACATGCCCATGATCTCCG AGCTCGCCGACGCAACGGAGATGTCCCTGACTACCCCGATCGTCACCCGT GGAGAGCTCGACCTCGTGCAAAAGTGAGCCGTCCGCTAACTCTAATCACA TAGATCGCTCTATTTCACCAGCACTCTCCCTCCCTTCGGAGGCCCCGATA AGTAGATGGACGCGCGATCTACCCACCCACCCCGTAAGTATGAACTCCCA AAACCAAAAACTAAATAAGTGCGAAGTTAAAATTAAAACACCCCCAATAT TTTTATTAATGCATACAAGTGTCAGCAGCCTACGTCCAGTCAATATTTTG ATGTCTGCGAAATCCATAGTTCATTCTTTGTCCGTATTCGCCACAACCAC CGCCATCGCCACACGACCGCCACCGCCGTGTTGAACTCTCTCTTTTTTTT TCTTCTTTTTCGTGCCCTCTCGCGCCATCCTGTCCCGCGTCTCTTTTGAT CGTCCTCCTCTTCCGTGTCATCGGGCGCGATCTACGTCACGCAGCCGATT GCAGTGGGACGTGTCGCGTGTCACGGCCATGCACTTCCTCGGCTACTACA CGTCACAGGTGGGTGGGGGGAGTGCTGGGAGGAGGAGGATGTTTTTTGCG TTGCAACAAGCATTGCAACAAGCATACAATACAGCAGCCTAGAGACATCA AGTGGTCGGCGGGGAAAGCTCTTTCCGGGGAGGTTTGGGTTGGATTCCAA CCAACCCTGTGTTGGTTGCATCCCCTGCGCGGGCACGCAAGCTTAACTTG TTTGTGCCTGCGCAAGGTATACGTACGTACGAAGTTGGAAGACAATGTTG CTGCGGGAGTCATTTGTGCTGGGCTCGATGCACAGGGGCTCTGCGTAGCT CGCCAGCGAAGAATGAGCTAAATGCCCTTTGCGCGGACACGAAACTGTTG CGTCAGTAGAGACGATTTTGTCGTGGAGGGGGGGGGGGGGCAGACAGGGA GAGAGGTCGAGCTAAGCTGGGCTGCTGCCCTTCAACTCTGAACATATTTT CTTCCTCGCCGTCGGTGCTGTCCCACTGCTGCCGCTGCTGCTCCTGCTTG CTGCTGCCTGCTACTGCGATCGGTCTTTGATGCTACTGTTGTTGGGTTTT TGTTGCTGGTTTGTGGATTTCGGCCGTCGTCGTATCGCTTCCGGGAACAG GGAGTGACCATGCCGGACGACACCTGCCAGGGTAGGCGCCTCGTGGAGAA GGTGCGGCGCTCGATGTAGCTGACAAGACAGGGCATGTTAACGACCGACC GCAACTCATTCAGGGTTTTATTATCCATACATATTGAACATACTTCGTAG ATCTGAGCCGTGGTCGGTACATCTCAGCGCGATGCACTCACCCTTCCTCA CTTCGTACGGACACGCCCAATAATTACATCGCGGTGCATCATAATCGTGC TTGCCTGGTGAAATCGACCTGCTTACAACTGCTTACCCGACTTCAAAGGG AGTAGCCAGCAGCCACCTAGGTATTCAGGAGGAATCTTAGCCAGCAGCCA CCGAGGTATTCAGGAGGAGTCTTTCGCAGAATTATTGGGTGTATCTAGAT CGCCGACGGCTGATGTGCCGTTGTGTGGGCATCATGCAGGGCGTATACAT AGTTCATTAGATGACACACGCTCCCCCCCCCCCCTGAGCCTGGGATCGGC GAGGCCCCGGTATGTAGGCGTGCTCTGCTGTGCCGCAAGGCTTTGTGGGG GTGCGAGGTCCATGGTCTTAGGCGACCTCCGGCGTCCATGATCGATGACT TATTTTCACGCACACACTCCACACACACACACACACCAAACAAACATGGC TTATACGGCTATGTACGGCATATCCATGATTCAATGAGTACACACGGTCA CCCGGCCTTCCCACCCCGGCCTTTTTCTCCCGTTTCTTGTCGGCGCCCTT TGCGTGCGCGGCAGGTGGTGACGTACATGAACAAGTACGTGGACTTCTTC GCGAACCTGTGCCAGCAGGACTACCAGTTCCAGCGGTATAAACCGTCGCA CATCGCCGCGGCCTCCATCTTGGCGGCGCGGAGGGCACTCTGCATAAAGT GAGAGTCCAGATCCACGCATGTTGGAGTGTGTGCTCTTAAAGTAGACTCT GCGCCGGTGGATGGTAAACATAAGTGGTGTAGCGCATTTGTTTTGCATGC CGGCGGTGGTTTTAGCGGACGAGAGTTTGATGTGTTTGCCCGGGCAGTCG CTGATTCCCACACAGCCCTCTCCCGCACGTCTTACTTCGTTTTGTTAAAT GTAAGCGTTTTGTTTTAAAAATAAGCAATGAATCAAAGGTGGAACCTACC CCACACTAGAGCAAGGACTCAATATGGGGTTCAAACGGGCATTCGATACG GTGGTAGGGACGTTTTATTTGGCGAAGCGAGAGCAGAAAAACAACCTAAA ATATCAGAAGAGTTCAACATCTCCCCTGCAAAGATTTGCGAGGTCGGCCA ACAAGTGTTTTGTTGAGTGTGTGACGTTGGTGTAGTGATCGCGCGCGAAG GTCCTGCCTGGAGCTGAACTTGAGCCCAGTCGAAATACAGTAGTAATATC GCGTCGAAGACGCGGGGGTTCCGTAGAGGGGCGGGGTCTACCCCCCTCGA ATGCAGAAAGGAGATAAGCCTGGGTGTGTGCACCCTGCGGCGTGGGGATT TAGCCTTCCAGTAACTGCGGCGTGGTGTTTCCACAAGAAACAAGCCGAAG CTCTGGTGTACAGACAAGACACGCGAAGAGTACAGTAGCATTTTCAACGA GCAGGCGGGGCTGGTTGGTATTGGTACATTGTTCTGTCCACAGAAGGACG CCCCAGCACAGCGGCCGAAAAAAAGCACCACGGCAGCACCTGGTATGTAG TAGGCAATCGTGGGTCGTGTCCTATCTCGGTGCTTTTTAACGGGTTGTTG TAGTTGTTGTTGAACATTGTCCCTTGGAATCATCATCGCACCCAACACCC AAACAGGCCGGTGTGGCGCGACGAGCTGACGGAGCTGACGGGCTACAAGC TGGAGGACGTGGTGGAGTGTGGAGAGGAGCTGTGGAATTTCTACGAGAAG ATGTTCCCGTCGCACAAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5805:5647..11814-

>mRNA_L-elsbetiae_contig5805.14240.1 ID=mRNA_L-elsbetiae_contig5805.14240.1|Name=mRNA_L-elsbetiae_contig5805.14240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1026bp|location=Sequence derived from alignment at L-elsbetiae_contig5805:5647..11814- (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGGACGAGGACTCACCGTCGGTTTTGTTTGCGGGCAGGCAGGCGGA
CGAGGACTCACCGTCGGTTTTGTTTGCGGGCAGGTACGAGGAGGCGGAGT
GCAACATGCCCATGATCTCCGAGCTCGCCGACGCAACGGAGATGTCCCTG
ACTACCCCGATCGTCACCCGTGGAGAGCTCGACCTCGTGCAAAATACGAG
GAGGCGGAGTGCAACATGCCCATGATCTCCGAGCTCGCCGACGCAACGGA
GATGTCCCTGACTACCCCGATCGTCACCCGTGGAGAGCTCGACCTCGTGC
AAAACCGATTGCAGTGGGACGTGTCGCGTGTCACGGCCATGCACTTCCTC
GGCTACTACACGTCACAGCCGATTGCAGTGGGACGTGTCGCGTGTCACGG
CCATGCACTTCCTCGGCTACTACACGTCACAGGGAGTGACCATGCCGGAC
GACACCTGCCAGGGTAGGCGCCTCGTGGAGAAGGGAGTGACCATGCCGGA
CGACACCTGCCAGGGTAGGCGCCTCGTGGAGAAGGTGGTGACGTACATGA
ACAAGTACGTGGACTTCTTCGCGAACCTGTGCCAGCAGGACTACCAGTTC
CAGCGGTATAAACCGTCGCACATCGCCGCGGCCTCCATCTTGGCGGCGCG
GAGGGCACTCTGCATAAAGTGGTGACGTACATGAACAAGTACGTGGACTT
CTTCGCGAACCTGTGCCAGCAGGACTACCAGTTCCAGCGGTATAAACCGT
CGCACATCGCCGCGGCCTCCATCTTGGCGGCGCGGAGGGCACTCTGCATA
AAGCCGGTGTGGCGCGACGAGCTGACGGAGCTGACGGGCTACAAGCTGGA
GGACGTGGTGGAGTGTGGAGAGGAGCTGTGGAATTTCTACGAGAAGATGT
TCCCGTCGCACAAGGCCGGTGTGGCGCGACGAGCTGACGGAGCTGACGGG
CTACAAGCTGGAGGACGTGGTGGAGTGTGGAGAGGAGCTGTGGAATTTCT
ACGAGAAGATGTTCCCGTCGCACAAG
back to top