mRNA_L-elsbetiae_contig5796.14218.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5796.14218.1
Unique NamemRNA_L-elsbetiae_contig5796.14218.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5796.14218.1 vs. uniprot
Match: A0A6H5JGQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ9_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 6.880e-30
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:   64 MAGGMGFGGSMLGEVLVSYSTSSLPPAKRHSITATSAHLEQLAAEAGIDMDADEINIEDLRMSRAEDESGYKLGG 288
            MAGGMGF GSMLGEVLVSYS SSLPPAKRHSI+ATSAH EQLAAEAGID+DADEI++EDLRM R EDESGY LGG
Sbjct:   48 MAGGMGFEGSMLGEVLVSYSMSSLPPAKRHSISATSAHFEQLAAEAGIDLDADEIHMEDLRMYRIEDESGYALGG 122
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5796.14218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGQ9_9PHAE6.880e-3086.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5796contigL-elsbetiae_contig5796:6841..7158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816622.0738792-CDS-L-elsbetiae_contig5796:6840..71581622816622.0738792-CDS-L-elsbetiae_contig5796:6840..7158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5796 6841..7158 +
1691683691.591945-CDS-L-elsbetiae_contig5796:6840..71581691683691.591945-CDS-L-elsbetiae_contig5796:6840..7158Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5796 6841..7158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5796.14218.1prot_L-elsbetiae_contig5796.14218.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5796 6841..7158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5796.14218.1

>prot_L-elsbetiae_contig5796.14218.1 ID=prot_L-elsbetiae_contig5796.14218.1|Name=mRNA_L-elsbetiae_contig5796.14218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
QICPAKIAPSSCETAISGGGGMAGGMGFGGSMLGEVLVSYSTSSLPPAKR
HSITATSAHLEQLAAEAGIDMDADEINIEDLRMSRAEDESGYKLGGDNDE
EDEDDG
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mRNA from alignment at L-elsbetiae_contig5796:6841..7158+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5796.14218.1 ID=mRNA_L-elsbetiae_contig5796.14218.1|Name=mRNA_L-elsbetiae_contig5796.14218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig5796:6841..7158+ (Laminarionema elsbetiae ELsaHSoW15)
CAGATTTGCCCTGCGAAAATTGCACCATCGTCTTGCGAGACTGCTATCAG
CGGTGGCGGTGGCATGGCAGGCGGAATGGGTTTCGGGGGAAGTATGCTGG
GAGAGGTCTTGGTGTCATACTCGACGAGCTCGTTGCCACCAGCGAAGAGG
CACTCTATCACCGCCACTTCCGCCCACCTCGAGCAACTGGCGGCGGAGGC
TGGGATCGACATGGATGCCGACGAGATAAACATCGAAGATCTTCGTATGA
GCCGCGCGGAGGACGAATCTGGGTACAAACTTGGCGGAGACAACGACGAA
GAAGACGAAGACGACGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5796:6841..7158+

>mRNA_L-elsbetiae_contig5796.14218.1 ID=mRNA_L-elsbetiae_contig5796.14218.1|Name=mRNA_L-elsbetiae_contig5796.14218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig5796:6841..7158+ (Laminarionema elsbetiae ELsaHSoW15)
CAGATTTGCCCTGCGAAAATTGCACCATCGTCTTGCGAGACTGCTATCAG
CGGTGGCGGTGGCATGGCAGGCGGAATGGGTTTCGGGGGAAGTATGCTGG
GAGAGGTCTTGGTGTCATACTCGACGAGCTCGTTGCCACCAGCGAAGAGG
CACTCTATCACCGCCACTTCCGCCCACCTCGAGCAACTGGCGGCGGAGGC
TGGGATCGACATGGATGCCGACGAGATAAACATCGAAGATCTTCGTATGA
GCCGCGCGGAGGACGAATCTGGGTACAAACTTGGCGGAGACAACGACGAA
GAAGACGAAGACGACGGCCAGATTTGCCCTGCGAAAATTGCACCATCGTC
TTGCGAGACTGCTATCAGCGGTGGCGGTGGCATGGCAGGCGGAATGGGTT
TCGGGGGAAGTATGCTGGGAGAGGTCTTGGTGTCATACTCGACGAGCTCG
TTGCCACCAGCGAAGAGGCACTCTATCACCGCCACTTCCGCCCACCTCGA
GCAACTGGCGGCGGAGGCTGGGATCGACATGGATGCCGACGAGATAAACA
TCGAAGATCTTCGTATGAGCCGCGCGGAGGACGAATCTGGGTACAAACTT
GGCGGAGACAACGACGAAGAAGACGAAGACGACGGC
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