mRNA_L-elsbetiae_contig5792.14214.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5792.14214.1
Unique NamemRNA_L-elsbetiae_contig5792.14214.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5792.14214.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 4.370e-47
Identity = 82/137 (59.85%), Postives = 104/137 (75.91%), Query Frame = 1
Query:    1 VIGFDIEWELSRLGAPPTPPATIQLAAGRVVVIFQVLHGQRNAPKKPPQSLADLLEDADLAKTGVGIKGDCTRLQRFYSVEIRNIVDLPALALQGKVDVGARRGLTDLCLHLVGKRLQKEQHLRLSTWNVAKLTEEQ 411
            ++  DIEWE+S  GAP  PPATIQLAAG+ VVIF VLHGQR+ P + P  L DLLED  L KTGVGIKGDCTRL  FY VE+ + VDL +LA++ KV++G RRGL DLC+HL+G++L K+  +RLS WN   L+++Q
Sbjct:  253 LLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQ 389          
BLAST of mRNA_L-elsbetiae_contig5792.14214.1 vs. uniprot
Match: A0A368RAU6_SETIT (3'-5' exonuclease domain-containing protein n=3 Tax=Setaria TaxID=4554 RepID=A0A368RAU6_SETIT)

HSP 1 Score: 84.7 bits (208), Expect = 1.340e-17
Identity = 51/139 (36.69%), Postives = 77/139 (55.40%), Query Frame = 1
Query:    1 VIGFDIEWELSRLGAPPTPPATIQLAAGRVVVIFQVLHGQRNAPKKPPQSLADLLEDADLAKTGVGIKGDCTRLQRFYSVEIRNIVDLPALALQ--GKVDVGARRGLTDLCLHLVGKRLQKEQHLRLSTWNVAKLTEEQ 411
            V+G D+EW  +R    P P A +QL   R  ++FQ+L          P +LAD L D   +  GVGI+ D  RL+  Y +E+ + VDL  LA +  G+ ++  R GL  L   ++G R++K  H+R+S W+   LTE+Q
Sbjct:   55 VVGLDVEWRPAR---EPGPVAVLQLCVDRRCLVFQILRADY-----VPDALADFLADRRFSFVGVGIRDDAARLRDGYGLEVPHAVDLRRLAARALGRPEL-RRAGLAALVREVMGVRMEKPHHVRVSAWDKRMLTEDQ 184          
BLAST of mRNA_L-elsbetiae_contig5792.14214.1 vs. uniprot
Match: A0A0A9KRM1_ARUDO (3'-5' exonuclease domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9KRM1_ARUDO)

HSP 1 Score: 84.0 bits (206), Expect = 2.340e-17
Identity = 52/139 (37.41%), Postives = 73/139 (52.52%), Query Frame = 1
Query:    1 VIGFDIEWELSRLGAPPTPPATIQLAAGRVVVIFQVLHGQRNAPKKPPQSLADLLEDADLAKTGVGIKGDCTRLQRFYSVEIRNIVDLPALALQ--GKVDVGARRGLTDLCLHLVGKRLQKEQHLRLSTWNVAKLTEEQ 411
            V G D+EW  SR    P   A +Q+  GR  ++FQ+L          P SLAD L D      GVGI  D  +L+  Y +E+   VDL  LA    GK+++  R GL  L   ++G R++K  H+R+S W+   LTE+Q
Sbjct:   52 VAGLDVEWRPSRA---PARVAVLQICVGRRCLVFQILRADY-----VPDSLADFLGDRRFTFVGVGIHDDVDKLRAGYGLEVERAVDLRRLAASRLGKLEL-RRAGLRALVREVLGVRMEKPHHVRVSAWDARALTEDQ 181          
BLAST of mRNA_L-elsbetiae_contig5792.14214.1 vs. uniprot
Match: A0A811NZH5_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811NZH5_9POAL)

HSP 1 Score: 81.3 bits (199), Expect = 2.750e-16
Identity = 46/138 (33.33%), Postives = 70/138 (50.72%), Query Frame = 1
Query:    1 VIGFDIEWELSRLGAPPTPPATIQLAAGRVVVIFQVLHGQRNAPKKPPQSLADLLEDADLAKTGVGIKGDCTRLQRFYSVEIRNIVDLPALALQGKVDVGAR-RGLTDLCLHLVGKRLQKEQHLRLSTWNVAKLTEEQ 411
            V+G D+EW  S       P A +Q+  GR  ++F++LH         P+SL D L D      GVG+  D  +L+  Y +++  +VDL  LA         R  GL  L   ++G R++K  H+R+S W+  KLT +Q
Sbjct:   52 VVGIDVEWRPSMSKGHVPPVALLQICVGRRCLVFKILHADYI-----PESLCDFLADERFTIVGVGVLDDAAKLRSGYGLKVGRMVDLRTLAATTLGKPALRGAGLQTLVFEVMGVRMEKPHHVRVSAWDARKLTYDQ 184          
BLAST of mRNA_L-elsbetiae_contig5792.14214.1 vs. uniprot
Match: UPI0019D671FA (Werner Syndrome-like exonuclease n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D671FA)

HSP 1 Score: 73.9 bits (180), Expect = 1.640e-13
Identity = 48/139 (34.53%), Postives = 73/139 (52.52%), Query Frame = 1
Query:    1 VIGFDIEWELSRLGAPPTPPATIQLAAGRVVVIFQVLHGQRNAPKKPPQSLADLLEDADLAKTGVGIKGDCTRLQRFYSVEIRNIVDLPALALQ--GKVDVGARRGLTDLCLHLVGKRLQKEQHLRLSTWNVAKLTEEQ 411
            V G D+EW  +R    P P A +Q+  GR  ++FQ+L          P +L+  L D   A  GVGI+ D   L+  Y +E+   VDL  LA +  G+ ++    GL  L   ++G R++K  H+R+S W   +LTE+Q
Sbjct:   54 VAGLDVEWRPAR---EPGPVAVLQVCVGRRCLVFQILRADY-----VPDALSCFLADRRFAFVGVGIRDDVAMLRDGYGLEVSRAVDLRRLAARTLGRPEL-RDAGLRALVRGVMGVRMEKPHHVRVSVWVKRELTEDQ 183          
BLAST of mRNA_L-elsbetiae_contig5792.14214.1 vs. uniprot
Match: A0A4U7KLZ5_9BASI (3'-5' exonuclease domain-containing protein n=1 Tax=Sporisorium graminicola TaxID=280036 RepID=A0A4U7KLZ5_9BASI)

HSP 1 Score: 72.8 bits (177), Expect = 3.000e-12
Identity = 46/131 (35.11%), Postives = 73/131 (55.73%), Query Frame = 1
Query:    4 IGFDIEWELSRLGAPPTPPATIQLAAGRVVVIFQVLHGQRNAPKKPPQSLADLLEDADLAKTGVGIKGDCTRLQRFYSVEIRNIVDLPALALQGK----VDVGARRGLTDLCLHLVGKRLQKEQHLRLSTW 384
            +G D+EW  SR GA  T  A +Q+ +  +++I  +       P  PP  L  +L+D ++ KTGV I+ D  +LQR YS++ RN+V+L  LA   +     DV     L DL    +G++L+K+  +R+S W
Sbjct:  140 MGLDLEWNFSRKGAQRT--ALLQICSPSMILIIHLSAMSHRIP--PP--LRSILQDPNIIKTGVAIRNDALKLQRDYSIDTRNVVELGTLAKLAQPGRWADVRRLISLRDLTRVYLGRKLRKDS-VRVSDW 263          
BLAST of mRNA_L-elsbetiae_contig5792.14214.1 vs. uniprot
Match: A0A0D2WNE3_CAPO3 (3'-5' exonuclease domain-containing protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WNE3_CAPO3)

HSP 1 Score: 72.0 bits (175), Expect = 4.600e-12
Identity = 52/139 (37.41%), Postives = 68/139 (48.92%), Query Frame = 1
Query:    4 IGFDIEWELSRL-GAPPTPPATIQLAAGR-VVVIFQVLHGQRNAPKKPPQSLADLLEDADLAKTGVGIKGDCTRLQRFYSVEIRNIVDLPALALQGKVDVGARRGLTDLCLHLVGKRLQKEQHLRLSTWNVAKLTEEQQ 414
            +GFDIEW    + G    P A +QLA       +F ++  Q   P     +L +LL D+ +AK GVGIK D TRL R YS+++   VDL  LA    V +  R  L  L    +   L K   LRL  W  A L+ E Q
Sbjct:  209 LGFDIEWFAPFIRGQKARPTALLQLAVENGPCYLFHLIQMQGIPP-----ALQELLADSRIAKVGVGIKNDVTRLVRDYSLKVNGAVDLEELAAVRVVPLRTRWSLQALVQKTLNCLLDKSSELRLGNWEEAPLSWEMQ 342          
BLAST of mRNA_L-elsbetiae_contig5792.14214.1 vs. uniprot
Match: UPI001C7F931C (uncharacterized protein n=1 Tax=Diaporthe citri TaxID=83186 RepID=UPI001C7F931C)

HSP 1 Score: 72.0 bits (175), Expect = 5.560e-12
Identity = 45/141 (31.91%), Postives = 72/141 (51.06%), Query Frame = 1
Query:    1 VIGFDIEWELS--RLGAPPTPPATIQLAAGRVVVIFQVLHGQRNAPKKPPQSLADLLEDADLAKTGVGIKGDCTRLQRFYSVEIRNIVDLPALALQGKVDVGARRGLTDLCLHLVGKRLQKEQHL--------RLSTWNVA 393
            V+GFD+EW +   +  +P    + +QLA+   V + QV          PP +L  ++ED+ + KTGV IKGDCTRL+++  +E R + +L  L  Q K     R  L +  L  +  ++++  HL        R S W+ A
Sbjct:  199 VLGFDLEWSIEGYKTDSPQKNVSLVQLASQSRVALLQVALFSSKGQLVPP-TLKRIMEDSGITKTGVWIKGDCTRLRKYLGIESRGVFELSHLFRQVKYTRNGRHDLINKRLVSLADQVKETMHLPMFKGQDVRSSDWSKA 338          
BLAST of mRNA_L-elsbetiae_contig5792.14214.1 vs. uniprot
Match: A0A2H3IUB0_WOLCO (3'-5' exonuclease domain-containing protein n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3IUB0_WOLCO)

HSP 1 Score: 70.9 bits (172), Expect = 1.430e-11
Identity = 41/92 (44.57%), Postives = 54/92 (58.70%), Query Frame = 1
Query:    4 IGFDIEWELSRLGAPP-TPPATIQLAAGRVVVIFQVLHGQRNAPKKPPQSLADLLEDADLAKTGVGIKGDCTRLQRFYSVEIRNIVDLPALA 276
            +GFD+EW+ +        P A IQLA    +++ QV   QR  PK     L D+L+DA + KTGVGI+GDC +L   Y+V  RN VDL  LA
Sbjct:   67 LGFDMEWKPTFFAKKKENPVALIQLATSDAILLIQVSAMQRFPPK-----LQDILQDAGIVKTGVGIQGDCKKLWTDYAVITRNCVDLAMLA 153          
BLAST of mRNA_L-elsbetiae_contig5792.14214.1 vs. uniprot
Match: A0A2P5IA84_9PEZI (3'-5' exonuclease n=1 Tax=Diaporthe helianthi TaxID=158607 RepID=A0A2P5IA84_9PEZI)

HSP 1 Score: 70.5 bits (171), Expect = 1.920e-11
Identity = 44/127 (34.65%), Postives = 66/127 (51.97%), Query Frame = 1
Query:    1 VIGFDIEWELS--RLGAPPTPPATIQLAAGRVVVIFQVLHGQRNAPKKPPQSLADLLEDADLAKTGVGIKGDCTRLQRFYSVEIRNIVDLPALALQGKVDVGARRGLTDLCLHLVGKRLQKEQHLRL 375
            VIGFD+EW +   +  +     + +QLA+   V +  V          PP +L  ++ED ++ KTGV IKGDCTRLQ++  +E R I +L  L  Q K     R  L +  L  +  ++Q+  HL L
Sbjct:  200 VIGFDLEWSMDGYKTTSARKNVSLVQLASQSRVALIHVAAFPIKDELVPP-TLKSIMEDPEITKTGVWIKGDCTRLQKYLGIESRGIFELSHLFRQVKYTKNGRHDLINKRLVRLADQVQETMHLPL 325          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5792.14214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE4.370e-4759.853'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A368RAU6_SETIT1.340e-1736.693'-5' exonuclease domain-containing protein n=3 Ta... [more]
A0A0A9KRM1_ARUDO2.340e-1737.413'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A811NZH5_9POAL2.750e-1633.33Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]
UPI0019D671FA1.640e-1334.53Werner Syndrome-like exonuclease n=1 Tax=Panicum v... [more]
A0A4U7KLZ5_9BASI3.000e-1235.113'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A0D2WNE3_CAPO34.600e-1237.413'-5' exonuclease domain-containing protein n=2 Ta... [more]
UPI001C7F931C5.560e-1231.91uncharacterized protein n=1 Tax=Diaporthe citri Ta... [more]
A0A2H3IUB0_WOLCO1.430e-1144.573'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A2P5IA84_9PEZI1.920e-1134.653'-5' exonuclease n=1 Tax=Diaporthe helianthi TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5792contigL-elsbetiae_contig5792:3193..3612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score87.8
Seed ortholog evalue4.3e-15
Seed eggNOG ortholog3694.POPTR_0016s02850.1
KEGG koko:K20777
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Werner Syndrome-like
EggNOG OGs37U7J@33090,3GI6E@35493,4JRGE@91835,KOG4373@1,KOG4373@2759
EC3.1.11.1
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons1
Model size420
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816621.8383605-CDS-L-elsbetiae_contig5792:3192..36121622816621.8383605-CDS-L-elsbetiae_contig5792:3192..3612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5792 3193..3612 -
1691683691.404775-CDS-L-elsbetiae_contig5792:3192..36121691683691.404775-CDS-L-elsbetiae_contig5792:3192..3612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5792 3193..3612 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5792.14214.1prot_L-elsbetiae_contig5792.14214.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5792 3193..3612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5792.14214.1

>prot_L-elsbetiae_contig5792.14214.1 ID=prot_L-elsbetiae_contig5792.14214.1|Name=mRNA_L-elsbetiae_contig5792.14214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
VIGFDIEWELSRLGAPPTPPATIQLAAGRVVVIFQVLHGQRNAPKKPPQS
LADLLEDADLAKTGVGIKGDCTRLQRFYSVEIRNIVDLPALALQGKVDVG
ARRGLTDLCLHLVGKRLQKEQHLRLSTWNVAKLTEEQQG*
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mRNA from alignment at L-elsbetiae_contig5792:3193..3612-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5792.14214.1 ID=mRNA_L-elsbetiae_contig5792.14214.1|Name=mRNA_L-elsbetiae_contig5792.14214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig5792:3193..3612- (Laminarionema elsbetiae ELsaHSoW15)
GTCATCGGTTTCGACATCGAGTGGGAGTTATCTCGTCTCGGTGCGCCTCC CACTCCGCCCGCCACGATTCAGCTAGCTGCCGGTCGGGTGGTGGTCATTT TTCAGGTCCTACATGGTCAACGCAACGCGCCGAAAAAGCCGCCTCAGTCG CTGGCGGATCTATTGGAAGATGCCGACCTAGCCAAGACGGGTGTGGGCAT CAAGGGCGACTGCACACGGCTCCAACGGTTCTACAGTGTGGAAATACGAA ACATAGTAGATCTGCCAGCACTGGCGCTGCAGGGTAAGGTGGATGTGGGC GCGAGGCGAGGCCTGACTGATTTGTGTCTTCACCTGGTGGGGAAGCGCTT GCAGAAGGAGCAGCACCTGAGGCTTTCAACCTGGAATGTGGCCAAGCTAA CGGAGGAGCAACAGGGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5792:3193..3612-

>mRNA_L-elsbetiae_contig5792.14214.1 ID=mRNA_L-elsbetiae_contig5792.14214.1|Name=mRNA_L-elsbetiae_contig5792.14214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig5792:3193..3612- (Laminarionema elsbetiae ELsaHSoW15)
GTCATCGGTTTCGACATCGAGTGGGAGTTATCTCGTCTCGGTGCGCCTCC
CACTCCGCCCGCCACGATTCAGCTAGCTGCCGGTCGGGTGGTGGTCATTT
TTCAGGTCCTACATGGTCAACGCAACGCGCCGAAAAAGCCGCCTCAGTCG
CTGGCGGATCTATTGGAAGATGCCGACCTAGCCAAGACGGGTGTGGGCAT
CAAGGGCGACTGCACACGGCTCCAACGGTTCTACAGTGTGGAAATACGAA
ACATAGTAGATCTGCCAGCACTGGCGCTGCAGGGTAAGGTGGATGTGGGC
GCGAGGCGAGGCCTGACTGATTTGTGTCTTCACCTGGTGGGGAAGCGCTT
GCAGAAGGAGCAGCACCTGAGGCTTTCAACCTGGAATGTGGCCAAGCTAA
CGGAGGAGCAACAGGGGTGAGTCATCGGTTTCGACATCGAGTGGGAGTTA
TCTCGTCTCGGTGCGCCTCCCACTCCGCCCGCCACGATTCAGCTAGCTGC
CGGTCGGGTGGTGGTCATTTTTCAGGTCCTACATGGTCAACGCAACGCGC
CGAAAAAGCCGCCTCAGTCGCTGGCGGATCTATTGGAAGATGCCGACCTA
GCCAAGACGGGTGTGGGCATCAAGGGCGACTGCACACGGCTCCAACGGTT
CTACAGTGTGGAAATACGAAACATAGTAGATCTGCCAGCACTGGCGCTGC
AGGGTAAGGTGGATGTGGGCGCGAGGCGAGGCCTGACTGATTTGTGTCTT
CACCTGGTGGGGAAGCGCTTGCAGAAGGAGCAGCACCTGAGGCTTTCAAC
CTGGAATGTGGCCAAGCTAACGGAGGAGCAACAGGGGTGA
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