mRNA_L-elsbetiae_contig577.14182.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig577.14182.1
Unique NamemRNA_L-elsbetiae_contig577.14182.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig577.14182.1 vs. uniprot
Match: D7G864_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G864_ECTSI)

HSP 1 Score: 407 bits (1045), Expect = 1.430e-137
Identity = 249/365 (68.22%), Postives = 273/365 (74.79%), Query Frame = 1 
Query:   46 RKAVRFSSVLISDIWQADSADVYSRRSIVVDLSKTPFALFRRDAVMMKQAR-SLSGSVPLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS------------------GG----RLWELESSESSEGHTTDLETDDTETDWHSD--DADSVCSSSAESSGCLVTEQ-LRRGSNSEG--PAFYGVWKRTSSEGYEELLLKSGVPKRAVAVAMRKHPVHIIDHDGSYFRLIVKNGLSKVDNTFWIGEEPKQQDTIGKKSYEVSMNWAHLSGHGSEDELALSSVCHQLGEEVIAIRSLHDGGSRMVLTQIVRRPAENYEVRAKHFFKLVTSKAELRDTGREQKQQ---LSSTVVTVRRQK 1047
            R+ VRF    IS IW ADS   Y+RRSIVVDLSKTPFALFRRDAVMMKQAR S+  S PLPP                  XXXXXXXXX        +                  GG    +LWE ESSESSEGHT DLETDDTETDWHSD  D  SV S + E+  C+V +Q LRRGSNSE   PAFYGVWKRTSSEGYEELLL SGVPKRAVA+AM+KHPVHIIDHDGSYFRLIVKNGLSKVDNTF+IG+EPKQ D IGK+SYEVSMNWAHLSGHG EDELAL+S+CHQ GEEVIAIRSLH+GG +MVLTQIVRRPAE YEVRAKHFFK VTSK+ELR  G++Q +Q   LSST+VTVRR+K
Sbjct:   73 RRTVRFPHQPISAIWVADSVLDYNRRSIVVDLSKTPFALFRRDAVMMKQARTSVDPSAPLPPPGPPALSPPRLRAAAAACXXXXXXXXXRSPVGSSDAAADSDASPSPPSAERRRPGGDRLAKLWESESSESSEGHT-DLETDDTETDWHSDADDCCSVGSGTEEAPPCVVEQQQLRRGSNSEAGSPAFYGVWKRTSSEGYEELLLSSGVPKRAVAMAMKKHPVHIIDHDGSYFRLIVKNGLSKVDNTFFIGDEPKQ-DIIGKQSYEVSMNWAHLSGHGREDELALTSICHQAGEEVIAIRSLHEGGDQMVLTQIVRRPAEGYEVRAKHFFKRVTSKSELRSGGKQQHKQQKGLSSTIVTVRRKK 435
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BLAST of mRNA_L-elsbetiae_contig577.14182.1 vs. uniprot
Match: A0A835YHH8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHH8_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.500e-31
Identity = 100/329 (30.40%), Postives = 144/329 (43.77%), Query Frame = 1 
Query:  112 YSRRSIVVDLSKTPFALFRRDAVMMKQARSLSGSVPLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGRLWELESSESSEGHTTDLETDDTETDWHSDDADSVCSSSAES---SGCLVTEQLRRGSNSEGPAFYGVWKRTSSEGYEELLLKSGVPKRAVAVAMRKHPVHIIDHDGSYFRLIVKNGLSKVDNTFWIGEEPKQQDTIGKKSYEVSMNWAHLSGHGSEDELALSSVC---------------------------------------HQLGEEVIAIRSLHDGGSRMVLTQIVRRPAENYEVRAKHFFKLVTSK 972
            Y RRSI VDL++TP+ALF +D  +M +    S                                                        EG ++ L  D+ E     + + S   + AE       +++ + RR      P F G+WKR+  EG+ ELL  SGVP++A   A +K PVHIIDHD  YFRLI+KNGL K D  + IG+EP+ + + G   YEV ++W H + +G  + L L+S+                                             E+IA+R+L DGG  +VL QIVR+PA   E RA+H FK +T++
Sbjct:  116 YDRRSIKVDLTRTPYALFHKDYYLMNRPAEYSPK--------------------------------------------------HTGKEGRSSSLSDDEEELHTEGEGSSSDDEARAEEVVRQKRMISLERRRALR---PNFSGIWKRSRIEGFIELLAFSGVPRKAALAAAQKRPVHIIDHDDDYFRLIIKNGLVKSDAHYIIGDEPRIEKS-GATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRITAR 390
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BLAST of mRNA_L-elsbetiae_contig577.14182.1 vs. uniprot
Match: A0A836CAN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN9_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.230e-24
Identity = 68/159 (42.77%), Postives = 89/159 (55.97%), Query Frame = 1 
Query:  490 QLRRGSNSEGPAFYGVWKRTSSEGYEELLLKSGVPKRAVAVAMRKHPVHIIDHDGSYFRLIVKNGLSKVDNTFWIGEEPKQQDTIGKKSYEVSMNWAHLSGHGSEDELALSSVCHQLGEEVIAIRSLHDGGSRMVLTQIVRRPAENYEVRAKHFFKLVT 966
            +LRR + +  P F GVWKR   EG+ ELL  SGVP++A   A ++  VHIIDHD  YFRLIVKNGL+KVD  +           I K  +                   +++    L  E+IA+R+L DGG+ +VL QIVRRPA   E RA+H FK +T
Sbjct:  118 ELRRRAAAARPDFSGVWKRARVEGFIELLAFSGVPRKAALSAAQRRAVHIIDHDDDYFRLIVKNGLTKVDGHY----------IIEKLKFXXXXXXXXXXXX-------IAAAAAPL--EMIAVRTLEDGGATLVLQQIVRRPATGEEARARHIFKRLT 257
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig577.14182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G864_ECTSI1.430e-13768.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YHH8_9STRA1.500e-3130.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAN9_9STRA2.230e-2442.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig577contigL-elsbetiae_contig577:24370..27475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCalycin
Ec32 orthologEc-12_001340.1
Exons2
Model size1052
Cds size1050
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816618.5697012-CDS-L-elsbetiae_contig577:24369..246871622816618.5697012-CDS-L-elsbetiae_contig577:24369..24687Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig577 24370..24687 -
1691683688.7854714-CDS-L-elsbetiae_contig577:24369..246871691683688.7854714-CDS-L-elsbetiae_contig577:24369..24687Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig577 24370..24687 -
1622816618.5809278-CDS-L-elsbetiae_contig577:26743..274751622816618.5809278-CDS-L-elsbetiae_contig577:26743..27475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig577 26744..27475 -
1691683688.8136935-CDS-L-elsbetiae_contig577:26743..274751691683688.8136935-CDS-L-elsbetiae_contig577:26743..27475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig577 26744..27475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig577.14182.1prot_L-elsbetiae_contig577.14182.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig577 24370..27475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig577.14182.1

>prot_L-elsbetiae_contig577.14182.1 ID=prot_L-elsbetiae_contig577.14182.1|Name=mRNA_L-elsbetiae_contig577.14182.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=350bp
ESSSACCGGGDGKTGRKAVRFSSVLISDIWQADSADVYSRRSIVVDLSKT
PFALFRRDAVMMKQARSLSGSVPLPPPAPPALPPQQAVCPPSQELPSSSP
SSSPPPSLRRRSGGRLWELESSESSEGHTTDLETDDTETDWHSDDADSVC
SSSAESSGCLVTEQLRRGSNSEGPAFYGVWKRTSSEGYEELLLKSGVPKR
AVAVAMRKHPVHIIDHDGSYFRLIVKNGLSKVDNTFWIGEEPKQQDTIGK
KSYEVSMNWAHLSGHGSEDELALSSVCHQLGEEVIAIRSLHDGGSRMVLT
QIVRRPAENYEVRAKHFFKLVTSKAELRDTGREQKQQLSSTVVTVRRQK*
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mRNA from alignment at L-elsbetiae_contig577:24370..27475-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig577.14182.1 ID=mRNA_L-elsbetiae_contig577.14182.1|Name=mRNA_L-elsbetiae_contig577.14182.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3106bp|location=Sequence derived from alignment at L-elsbetiae_contig577:24370..27475- (Laminarionema elsbetiae ELsaHSoW15)
GAGAGTTCATCGGCTTGTTGTGGGGGTGGGGATGGCAAGACCGGACGCAA
AGCCGTCAGGTTTAGCTCCGTTTTGATAAGCGACATCTGGCAGGCGGACT
CCGCCGACGTATACAGCAGAAGGAGCATCGTGGTGGACCTGTCGAAAACG
CCGTTCGCTCTCTTCCGGAGAGACGCCGTGATGATGAAGCAGGCGAGGTC
TCTGTCTGGCTCGGTGCCGCTGCCGCCGCCCGCCCCTCCTGCGCTTCCTC
CACAGCAAGCCGTTTGCCCTCCCAGTCAGGAATTGCCCTCGTCTTCGCCC
TCGTCTTCGCCACCCCCTTCTCTCCGCCGCCGATCCGGCGGCAGGCTGTG
GGAGTTGGAGTCGAGCGAGAGCTCCGAGGGCCACACTACGGACTTGGAGA
CGGACGACACCGAGACCGACTGGCATTCGGACGACGCCGATTCCGTTTGT
AGCTCGTCGGCGGAAAGTTCGGGTTGCCTGGTTACCGAGCAGCTGCGCCG
GGGCAGCAATTCGGAAGGCCCAGCTTTTTACGGCGTGTGGAAGCGGACAA
GCTCGGAGGGTTACGAGGAGCTGCTGCTGAAGTCGGGTGTTCCCAAGCGG
GCGGTGGCAGTCGCCATGAGGAAACACCCCGTGCACATCATTGACCACGA
TGGGAGCTACTTCCGGCTTATTGTCAAGAACGGTCTCAGCAAGGTGGACA
ACACATTTTGGATCGGAGAGGAGCCCAAGCAGGTGAGGATTACGTATCAT
ATGTAGGATTTTGTTTCACCCATCGCGTGTTTTTTGTTTCACCCAGTGTG
TTTGTCCCGGGTATCTATGCGTTCCATATGTATGTACTCGAACTCTTCTG
TGACAGTAGTTCTTCGGGGAAACTGGTCTTGTTGAATGTTTGAAAAAGAT
CTACGATGTTCCGACAGCAAGCAAGTACATCCACTCCGTTTCACTTTCTC
GAAATTTTAACTGGGTTATACATCAACGGCGCGCTTCCAGGCCTTGGCGA
TATCGACATGCAGCATATTAGGCTTCCACAAGAGCGCTCTCCCACCCCCT
TCACAGCTTCGACAAGCTGTCTCCGAAGTTGAACTAAATTGAGCAAAATG
CAGGAAAAAGTCGAGATTTTTCACGCTACAAATGTGTGTACCCCATTTTC
GGAACATCATGTCATTCTTCTCTCTTGGCGATGGATTTGCGTCCCTACCG
TCTCGGATGAAGGTGTCCATCCGAAATATGGTCAAATTTCAGCAGCGGGC
ACACCCAACTTTCTCTCCTCTGCCTCGCTCTCGGTCTAGTGCCAAGCAGT
CGGAATAATTGTATGCTTTCTAAACTCGTCCGCCACAATCACCGTCGCTG
AACCGTATACTTCGAGTACTCTATATTTATCCCCCGAGTGTTTTACGGTG
TTTTTTTGTTGCTGAAACGAAATCATCAGGACGCCCCCCGGGCGATGGAA
TTCTGTGAAAACACCGCATTTGTAGGATTCCGTACGTACAATCATGTGAT
ACTGGTCTGGCCGAGTAGCAAAACATGTCAGAGCTTAAAACCTGCCCTGC
ACAACTCTCCTGCTCAATTGTCAACGATTCTATGTATCATGTGTAAAGAT
AGATGTCGTTCTTCTCCCAAGACCAAAAGGGATTCAAGCTCACAACTTGC
TGCTCTACATATGCCAGAGGCGCACGAGGCACTATGTACGAACTAGACCA
CCAAGCGATCAGAAGATAAAGGTGTCATCAATTGTTTTTGTTCCTAAGAG
TTTACGTTTCGCCTGTCTGTTCTTATATTTCGCCAACTGCGTTGCTGGAG
ATTCTAACAGGGAATGGCTGTTCGACCTCGTTTCTCTGCGTAGCTCTTGT
CACTAGCTTCGGGCGATGTGTTCCTTCTATGGTACAACACATGTTTTACC
CCGCTTTCCCCCCCGGCTCTCCCTTTCCGTGCATGTATAGACTATTAATA
CGATGTAGTAGTATCAGCTTCCCTTCAGACAAAATTTAGCCCATGGAATA
TTATTCAGGGGGTGAAGCCAAGATGACACATGTACGCATGTTGTGAAAAA
ACAACAAACAACAATATGTACCTATGTACCGTACATGCGTATTTTTCTTA
GTGTGTTTCCGTTGGCGTGGGTTTCTTTAGTGTTATTTGGAAAACATTTC
AAGGGGGCGCTTGATTCGCTTATTTTCGTCGATTTCGCGCTGCAGAGTGC
CGGGCTGGTGATGAATAAACCACAGGCCTGTAGATATCGCACTTGTCGAG
GGTTTAGCACAAAGAACTAAGCGAATCGATGCCCCAGTCGCAAAGTTAGG
ATGGATATTCACCGACCAAAGTTCGTCGGGGATACGCAGTCGAAGCAAGC
ACATAAAGAGCCCCCTACCAAAAGCCCCCGCCTTCTCCGGCCCACCCTGG
CACCAATGCGCCAGCCCTAGGAGCTCACATAACCCATCCCAGACCAAACA
AACTAGAGGGGTGCGCTTTTACTGCGAATGAGCTGGTGCCGGTGCAGATT
TTAAACTCATAATCGCCCTGTGAGTGTCGAATCAGAGCTGCCTTCCCATG
CGCGTTGGTGCCCACGAGTTTGAAAGGCTGGACAGAAAAGCATTGCCAAA
AGGCACCAGTTTGAGAGGGCTTGTCAGATCTGATCTTGTCCTACGATGTA
TGTATGCCATTCCCGAAGCCCTGTCATGAAATATCTCATACTCTTGTTCT
TTGGATCGTGCCCACTACTACTTGCTCCCTTTCTGTTCTGTTTGCTGATG
TGGTGGCTTTGTTTCTCCCATTACCTCCGTGCTTTGAGCAGGACACCATC
GGCAAGAAGAGCTACGAGGTGTCCATGAACTGGGCGCATCTGTCGGGCCA
CGGTTCCGAGGACGAGCTCGCGCTGTCGAGCGTCTGCCACCAGTTGGGGG
AGGAGGTGATCGCGATCCGATCACTCCACGACGGGGGCAGCCGCATGGTG
TTGACTCAGATAGTGCGCAGGCCGGCGGAGAACTACGAGGTCCGCGCCAA
GCACTTCTTCAAGCTCGTGACGAGCAAGGCGGAGCTCAGGGACACCGGCA
GGGAGCAGAAGCAGCAGTTGTCTTCGACGGTGGTAACCGTCAGAAGGCAA
AAGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig577:24370..27475-

>mRNA_L-elsbetiae_contig577.14182.1 ID=mRNA_L-elsbetiae_contig577.14182.1|Name=mRNA_L-elsbetiae_contig577.14182.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2100bp|location=Sequence derived from alignment at L-elsbetiae_contig577:24370..27475- (Laminarionema elsbetiae ELsaHSoW15)
GAGAGTTCATCGGCTTGTTGTGGGGGTGGGGATGGCAAGACCGGACGCAA
AGCCGTCAGGTTTAGCTCCGTTTTGATAAGCGACATCTGGCAGGCGGACT
CCGCCGACGTATACAGCAGAAGGAGCATCGTGGTGGACCTGTCGAAAACG
CCGTTCGCTCTCTTCCGGAGAGACGCCGTGATGATGAAGCAGGCGAGGTC
TCTGTCTGGCTCGGTGCCGCTGCCGCCGCCCGCCCCTCCTGCGCTTCCTC
CACAGCAAGCCGTTTGCCCTCCCAGTCAGGAATTGCCCTCGTCTTCGCCC
TCGTCTTCGCCACCCCCTTCTCTCCGCCGCCGATCCGGCGGCAGGCTGTG
GGAGTTGGAGTCGAGCGAGAGCTCCGAGGGCCACACTACGGACTTGGAGA
CGGACGACACCGAGACCGACTGGCATTCGGACGACGCCGATTCCGTTTGT
AGCTCGTCGGCGGAAAGTTCGGGTTGCCTGGTTACCGAGCAGCTGCGCCG
GGGCAGCAATTCGGAAGGCCCAGCTTTTTACGGCGTGTGGAAGCGGACAA
GCTCGGAGGGTTACGAGGAGCTGCTGCTGAAGTCGGGTGTTCCCAAGCGG
GCGGTGGCAGTCGCCATGAGGAAACACCCCGTGCACATCATTGACCACGA
TGGGAGCTACTTCCGGCTTATTGTCAAGAACGGTCTCAGCAAGGTGGACA
ACACATTTTGGATCGGAGAGGAGCCCAAGCAGGAGAGTTCATCGGCTTGT
TGTGGGGGTGGGGATGGCAAGACCGGACGCAAAGCCGTCAGGTTTAGCTC
CGTTTTGATAAGCGACATCTGGCAGGCGGACTCCGCCGACGTATACAGCA
GAAGGAGCATCGTGGTGGACCTGTCGAAAACGCCGTTCGCTCTCTTCCGG
AGAGACGCCGTGATGATGAAGCAGGCGAGGTCTCTGTCTGGCTCGGTGCC
GCTGCCGCCGCCCGCCCCTCCTGCGCTTCCTCCACAGCAAGCCGTTTGCC
CTCCCAGTCAGGAATTGCCCTCGTCTTCGCCCTCGTCTTCGCCACCCCCT
TCTCTCCGCCGCCGATCCGGCGGCAGGCTGTGGGAGTTGGAGTCGAGCGA
GAGCTCCGAGGGCCACACTACGGACTTGGAGACGGACGACACCGAGACCG
ACTGGCATTCGGACGACGCCGATTCCGTTTGTAGCTCGTCGGCGGAAAGT
TCGGGTTGCCTGGTTACCGAGCAGCTGCGCCGGGGCAGCAATTCGGAAGG
CCCAGCTTTTTACGGCGTGTGGAAGCGGACAAGCTCGGAGGGTTACGAGG
AGCTGCTGCTGAAGTCGGGTGTTCCCAAGCGGGCGGTGGCAGTCGCCATG
AGGAAACACCCCGTGCACATCATTGACCACGATGGGAGCTACTTCCGGCT
TATTGTCAAGAACGGTCTCAGCAAGGTGGACAACACATTTTGGATCGGAG
AGGAGCCCAAGCAGCAGGACACCATCGGCAAGAAGAGCTACGAGGTGTCC
ATGAACTGGGCGCATCTGTCGGGCCACGGTTCCGAGGACGAGCTCGCGCT
GTCGAGCGTCTGCCACCAGTTGGGGGAGGAGGTGATCGCGATCCGATCAC
TCCACGACGGGGGCAGCCGCATGGTGTTGACTCAGATAGTGCGCAGGCCG
GCGGAGAACTACGAGGTCCGCGCCAAGCACTTCTTCAAGCTCGTGACGAG
CAAGGCGGAGCTCAGGGACACCGGCAGGGAGCAGAAGCAGCAGTTGTCTT
CGACGGTGGTAACCGTCAGAAGGCAAAAGTAGCAGGACACCATCGGCAAG
AAGAGCTACGAGGTGTCCATGAACTGGGCGCATCTGTCGGGCCACGGTTC
CGAGGACGAGCTCGCGCTGTCGAGCGTCTGCCACCAGTTGGGGGAGGAGG
TGATCGCGATCCGATCACTCCACGACGGGGGCAGCCGCATGGTGTTGACT
CAGATAGTGCGCAGGCCGGCGGAGAACTACGAGGTCCGCGCCAAGCACTT
CTTCAAGCTCGTGACGAGCAAGGCGGAGCTCAGGGACACCGGCAGGGAGC
AGAAGCAGCAGTTGTCTTCGACGGTGGTAACCGTCAGAAGGCAAAAGTAG
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