mRNA_L-elsbetiae_contig5764.14175.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5764.14175.1
Unique NamemRNA_L-elsbetiae_contig5764.14175.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5764.14175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5764contigL-elsbetiae_contig5764:840..2987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size723
Cds size723
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5764.14175.1prot_L-elsbetiae_contig5764.14175.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5764 840..2987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816617.8144236-CDS-L-elsbetiae_contig5764:839..9081622816617.8144236-CDS-L-elsbetiae_contig5764:839..908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5764 840..908 +
1691683688.2080057-CDS-L-elsbetiae_contig5764:839..9081691683688.2080057-CDS-L-elsbetiae_contig5764:839..908Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5764 840..908 +
1622816617.8265047-CDS-L-elsbetiae_contig5764:1211..14401622816617.8265047-CDS-L-elsbetiae_contig5764:1211..1440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5764 1212..1440 +
1691683688.2205713-CDS-L-elsbetiae_contig5764:1211..14401691683688.2205713-CDS-L-elsbetiae_contig5764:1211..1440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5764 1212..1440 +
1622816617.8384042-CDS-L-elsbetiae_contig5764:2562..29871622816617.8384042-CDS-L-elsbetiae_contig5764:2562..2987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5764 2563..2987 +
1691683688.2294915-CDS-L-elsbetiae_contig5764:2562..29871691683688.2294915-CDS-L-elsbetiae_contig5764:2562..2987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5764 2563..2987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5764.14175.1

>prot_L-elsbetiae_contig5764.14175.1 ID=prot_L-elsbetiae_contig5764.14175.1|Name=mRNA_L-elsbetiae_contig5764.14175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=241bp
EGVTSVGENRPLELGDPTFSNPEAGGESETAAVATPGAAAELGGAVGGAE
EEWAVPTVARGENAPARGGADPIAAGADGDGAAPAITAAAGEHQSAGAGG
VATPVDDSSGGVSETEVIPVVSARTGDPSFLEAAVTPVVASGRGTPVDAG
GDGLPDTDVLPDTDVLPDTDVLPDVSHRAPVVTAPTPPEPVAAAAAPPPP
PPTTSGGAADTPADTPPPVAAIEQDLPPAAAAASTSGEEED
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mRNA from alignment at L-elsbetiae_contig5764:840..2987+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5764.14175.1 ID=mRNA_L-elsbetiae_contig5764.14175.1|Name=mRNA_L-elsbetiae_contig5764.14175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2148bp|location=Sequence derived from alignment at L-elsbetiae_contig5764:840..2987+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGGTGTCACTAGCGTGGGCGAGAACCGGCCTCTCGAGCTCGGCGACCC
AACTTTTTCGAACCCCGAGGTAACAGATGGTAGCAGCAGCAGCAGCAGCC
AGCAGCAGCAGCGGCAGCAGCGGCAGCAGCGGCAGCAGCGGCAGCAGCAG
CAGCAAAAACCACAAGAAAAATAGGCGAAACGGCGACGCCATTGACTCTC
CTTCGTTGTTTTGTTTTGATCTTCCGTATTTGCAGCAGCAACAGCAAGAG
TAAGAAGAAAAATACACGAAAAACGACGACACTGACGCCATTCATTGACT
CTCTTTCCTTCGGTGTGGCTCTTGCCCCGTTGCCGCCTCCCCCGTTGTCG
CCCGCCCCCCTCCTGCGTGCAGGCTGGTGGTGAGAGCGAGACCGCCGCCG
TGGCTACCCCTGGTGCTGCCGCGGAGCTCGGCGGCGCCGTCGGCGGTGCC
GAGGAGGAGTGGGCCGTGCCGACGGTCGCGAGGGGAGAGAACGCGCCGGC
CAGGGGAGGTGCAGATCCCATCGCGGCGGGAGCTGACGGGGACGGGGCCG
CTCCGGCCATCACCGCCGCCGCCGGAGAGCATCAATCGGCGGGTGCTGGC
GGTGAGTATTTGTTTTTCCCCTTTTCCTCCCATTCTTGGCATACTCATTC
GTCGTCTGCCCCACTCCCCCCCCCCCCCCCCCCCCCCCTTTTTCCCCTAC
CACCTTTTTCCTAGACGACCCAACCGGGGGGGGGGGTTGGGGTGGGGTTG
CTTGGTTTTCGGGGGNNNNNNNNNGGGGGGGCGGGGCGGGGGGGGGGGGT
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGCGTTCGTTTGCTCCTCGGGTTAACATTCTGTTCG
AGCATACCTGGCTGTCAGGTAGATTACCTGGTGCGGGCTATGGTAGGTAA
TAGGAGTACGGTAAAGTATCGGCGAAGCGGGAGGGGGGCGCCTGTCCGAG
GGCAAACGTCTGTCCCCCTGTCGGTAATTTCGAGCCCCCTCGGCTGGTTC
GCCCGACACCGATCTAGGAAGCAGACGCAGCCAGTCTCGTGAATACGGGG
CCGAACGCTTCCAGAGCGTCTTTTTGGGGGGGGCTAAATGCCCGGCTCTG
CCCAAGAGCAACGGGGGGAGGGCAGTCGGGAGAGAGCCGAACCCGAAATA
CCATCCATTCTAGTCTTTGATCAGCCCTTTTCCTCCGCCTTTCCCTCCTT
TTTTTTTTCCCCCCACTGGTCCCCTGAACGCTTATTTGTAGACCTTGTGC
ATCTTTGTGTGCGTTTGTGTTTGTGTTTGTGTGTGTGTGTGAGCGGTGTA
TTTTGTTTTGCCTAGCCCCCCGAGTAGTTTCTCCCCCGGGGTATATACAT
GGTAAAAAAAAAAGGACCCCTCCCTCCCCTGGTACTTGAATTTCCCCCAC
AGAGCATTCTAGCAAGCGCAAGAGCCCCCTTGGTACTTGAATTTCCCCCA
CATGTGCATTCTAACAAGCGCAAGAGCCCCCCCTCCCCAAAAGTTGTAGT
TGGATACGGCTGAGTACGGCTACTTGCGGCGGTCGGTATTGCCCGCGGTG
CTGTTGTTGTGGCGTAAATAAAGTGCACGGCATCTCTCACCTGCCTGCTG
CACAAAATGAATGCTAAACCGCGTGCACGGATAGACGACCCGACCCGACC
CGACCCGCCCTTCCTCGAAGCAGGCGTGGCGACCCCGGTCGACGACAGCA
GCGGTGGCGTGTCCGAGACCGAAGTTATCCCCGTCGTTTCTGCACGGACG
GGCGACCCGTCCTTCCTCGAAGCAGCTGTGACACCGGTCGTCGCCAGCGG
CCGCGGGACACCGGTCGACGCCGGCGGCGACGGCCTCCCCGACACCGACG
TTCTCCCCGACACCGACGTTCTCCCCGACACCGACGTTCTCCCCGACGTC
TCACACCGGGCACCCGTCGTGACCGCCCCGACGCCGCCGGAGCCCGTTGC
TGCTGCCGCCGCGCCTCCCCCCCCCCCGCCCACAACGAGCGGGGGAGCGG
CGGACACGCCGGCCGATACGCCCCCCCCGGTGGCGGCCATCGAGCAAGAT
CTTCCACCGGCTGCTGCTGCTGCTTCGACGAGCGGCGAAGAAGAGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5764:840..2987+

>mRNA_L-elsbetiae_contig5764.14175.1 ID=mRNA_L-elsbetiae_contig5764.14175.1|Name=mRNA_L-elsbetiae_contig5764.14175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig5764:840..2987+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGGTGTCACTAGCGTGGGCGAGAACCGGCCTCTCGAGCTCGGCGACCC
AACTTTTTCGAACCCCGAGGAGGGTGTCACTAGCGTGGGCGAGAACCGGC
CTCTCGAGCTCGGCGACCCAACTTTTTCGAACCCCGAGGCTGGTGGTGAG
AGCGAGACCGCCGCCGTGGCTACCCCTGGTGCTGCCGCGGAGCTCGGCGG
CGCCGTCGGCGGTGCCGAGGAGGAGTGGGCCGTGCCGACGGTCGCGAGGG
GAGAGAACGCGCCGGCCAGGGGAGGTGCAGATCCCATCGCGGCGGGAGCT
GACGGGGACGGGGCCGCTCCGGCCATCACCGCCGCCGCCGGAGAGCATCA
ATCGGCGGGTGCTGGCGGCTGGTGGTGAGAGCGAGACCGCCGCCGTGGCT
ACCCCTGGTGCTGCCGCGGAGCTCGGCGGCGCCGTCGGCGGTGCCGAGGA
GGAGTGGGCCGTGCCGACGGTCGCGAGGGGAGAGAACGCGCCGGCCAGGG
GAGGTGCAGATCCCATCGCGGCGGGAGCTGACGGGGACGGGGCCGCTCCG
GCCATCACCGCCGCCGCCGGAGAGCATCAATCGGCGGGTGCTGGCGGCGT
GGCGACCCCGGTCGACGACAGCAGCGGTGGCGTGTCCGAGACCGAAGTTA
TCCCCGTCGTTTCTGCACGGACGGGCGACCCGTCCTTCCTCGAAGCAGCT
GTGACACCGGTCGTCGCCAGCGGCCGCGGGACACCGGTCGACGCCGGCGG
CGACGGCCTCCCCGACACCGACGTTCTCCCCGACACCGACGTTCTCCCCG
ACACCGACGTTCTCCCCGACGTCTCACACCGGGCACCCGTCGTGACCGCC
CCGACGCCGCCGGAGCCCGTTGCTGCTGCCGCCGCGCCTCCCCCCCCCCC
GCCCACAACGAGCGGGGGAGCGGCGGACACGCCGGCCGATACGCCCCCCC
CGGTGGCGGCCATCGAGCAAGATCTTCCACCGGCTGCTGCTGCTGCTTCG
ACGAGCGGCGAAGAAGAGGACGCGTGGCGACCCCGGTCGACGACAGCAGC
GGTGGCGTGTCCGAGACCGAAGTTATCCCCGTCGTTTCTGCACGGACGGG
CGACCCGTCCTTCCTCGAAGCAGCTGTGACACCGGTCGTCGCCAGCGGCC
GCGGGACACCGGTCGACGCCGGCGGCGACGGCCTCCCCGACACCGACGTT
CTCCCCGACACCGACGTTCTCCCCGACACCGACGTTCTCCCCGACGTCTC
ACACCGGGCACCCGTCGTGACCGCCCCGACGCCGCCGGAGCCCGTTGCTG
CTGCCGCCGCGCCTCCCCCCCCCCCGCCCACAACGAGCGGGGGAGCGGCG
GACACGCCGGCCGATACGCCCCCCCCGGTGGCGGCCATCGAGCAAGATCT
TCCACCGGCTGCTGCTGCTGCTTCGACGAGCGGCGAAGAAGAGGAC
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