mRNA_L-elsbetiae_contig5760.14171.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5760.14171.1
Unique NamemRNA_L-elsbetiae_contig5760.14171.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5760.14171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5760contigL-elsbetiae_contig5760:44..654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size611
Cds size372
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816617.4195302-UTR-L-elsbetiae_contig5760:43..2821622816617.4195302-UTR-L-elsbetiae_contig5760:43..282Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5760 44..282 +
1691683687.9341934-UTR-L-elsbetiae_contig5760:43..2821691683687.9341934-UTR-L-elsbetiae_contig5760:43..282Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5760 44..282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816617.432796-CDS-L-elsbetiae_contig5760:282..6541622816617.432796-CDS-L-elsbetiae_contig5760:282..654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5760 283..654 +
1691683687.945006-CDS-L-elsbetiae_contig5760:282..6541691683687.945006-CDS-L-elsbetiae_contig5760:282..654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5760 283..654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5760.14171.1prot_L-elsbetiae_contig5760.14171.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5760 283..654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5760.14171.1

>prot_L-elsbetiae_contig5760.14171.1 ID=prot_L-elsbetiae_contig5760.14171.1|Name=mRNA_L-elsbetiae_contig5760.14171.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MTGRGRTIKVCQTNDGGSYTACGDAACFRGYGNGDADDRSITAADVGYTL
QLLLAPAVAVCVECPVIGDRLTSCMAFVSVMEVASDSGQGAFEAGHQPRL
KGRRPNPRKGEEACVLWSAPGKN*
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mRNA from alignment at L-elsbetiae_contig5760:44..654+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5760.14171.1 ID=mRNA_L-elsbetiae_contig5760.14171.1|Name=mRNA_L-elsbetiae_contig5760.14171.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=611bp|location=Sequence derived from alignment at L-elsbetiae_contig5760:44..654+ (Laminarionema elsbetiae ELsaHSoW15)
TGCTTTGCTTTTTTCTACGGGTGGGTGTAGTTCGCGACAACCAGCGATGG
AGATTTGTTTTGGCGAACCTAAAACTGCGATATATATAGAAGCATTGAGA
TATATAGATGCTCTTCATGCGATTTGTAAGGGCTCGAGTCATCTGTTGAT
TGCGTGCGGGCTCCGCCCGTTAGGTATGTTTATCTCGAGATGGTCGGGTT
CACTTATTGGTGCGGCATTTCTCTGGAGCAGTAGCAGGCATGACAGGAAG
GGGCAGGACGATAAAAGTGTGCCAAACCAATGACGGTGGCAGTTACACAG
CTTGTGGGGACGCTGCGTGCTTCCGCGGCTACGGGAACGGTGATGCTGAT
GACAGGAGTATAACAGCAGCAGATGTTGGTTACACGCTACAGCTTTTACT
CGCCCCTGCTGTGGCGGTGTGCGTGGAATGCCCGGTGATTGGTGATCGAC
TTACATCCTGCATGGCTTTTGTGTCAGTAATGGAGGTGGCCTCGGACAGT
GGACAGGGCGCGTTTGAGGCTGGCCACCAGCCGCGGCTTAAGGGGAGAAG
GCCAAACCCCAGAAAAGGCGAAGAGGCATGTGTTTTGTGGTCCGCACCCG
GCAAAAACTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5760:44..654+

>mRNA_L-elsbetiae_contig5760.14171.1 ID=mRNA_L-elsbetiae_contig5760.14171.1|Name=mRNA_L-elsbetiae_contig5760.14171.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig5760:44..654+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACAGGAAGGGGCAGGACGATAAAAGTGTGCCAAACCAATGACGGTGG
CAGTTACACAGCTTGTGGGGACGCTGCGTGCTTCCGCGGCTACGGGAACG
GTGATGCTGATGACAGGAGTATAACAGCAGCAGATGTTGGTTACACGCTA
CAGCTTTTACTCGCCCCTGCTGTGGCGGTGTGCGTGGAATGCCCGGTGAT
TGGTGATCGACTTACATCCTGCATGGCTTTTGTGTCAGTAATGGAGGTGG
CCTCGGACAGTGGACAGGGCGCGTTTGAGGCTGGCCACCAGCCGCGGCTT
AAGGGGAGAAGGCCAAACCCCAGAAAAGGCGAAGAGGCATGTGTTTTGTG
GTCCGCACCCGGCAAAAACTGAATGACAGGAAGGGGCAGGACGATAAAAG
TGTGCCAAACCAATGACGGTGGCAGTTACACAGCTTGTGGGGACGCTGCG
TGCTTCCGCGGCTACGGGAACGGTGATGCTGATGACAGGAGTATAACAGC
AGCAGATGTTGGTTACACGCTACAGCTTTTACTCGCCCCTGCTGTGGCGG
TGTGCGTGGAATGCCCGGTGATTGGTGATCGACTTACATCCTGCATGGCT
TTTGTGTCAGTAATGGAGGTGGCCTCGGACAGTGGACAGGGCGCGTTTGA
GGCTGGCCACCAGCCGCGGCTTAAGGGGAGAAGGCCAAACCCCAGAAAAG
GCGAAGAGGCATGTGTTTTGTGGTCCGCACCCGGCAAAAACTGA
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