mRNA_L-elsbetiae_contig5759.14166.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5759.14166.1
Unique NamemRNA_L-elsbetiae_contig5759.14166.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5759.14166.1 vs. uniprot
Match: D8LNJ8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNJ8_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.040e-5
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:    1 MVDVLRKRCRHAECTTSPSFGVPGSNTAIFCAKHAEEGM 117
            M+DV+ KRC H+ C   PS+G+P S  A FCA HA  GM
Sbjct:    1 MIDVVSKRCAHSGCNKWPSYGMPPSKKAEFCANHARPGM 39
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BLAST of mRNA_L-elsbetiae_contig5759.14166.1 vs. uniprot
Match: A0A6H5LBM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBM3_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 2.870e-5
Identity = 20/40 (50.00%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:    1 MVDVLR-KRCRHAECTTSPSFGVPGSNTAIFCAKHAEEGM 117
            MVD+   +RC H +C   P++GVPG+  A FCA HA +GM
Sbjct:    8 MVDIHNIRRCAHEDCVKHPTYGVPGTRKAEFCAPHALDGM 47
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5759.14166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNJ8_ECTSI1.040e-553.85EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5LBM3_9PHAE2.870e-550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5759contigL-elsbetiae_contig5759:8345..8617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size274
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816617.112911-CDS-L-elsbetiae_contig5759:8344..86171622816617.112911-CDS-L-elsbetiae_contig5759:8344..8617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5759 8345..8617 +
1691683687.7468138-CDS-L-elsbetiae_contig5759:8344..86171691683687.7468138-CDS-L-elsbetiae_contig5759:8344..8617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5759 8345..8617 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5759.14166.1prot_L-elsbetiae_contig5759.14166.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5759 8345..8617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5759.14166.1

>prot_L-elsbetiae_contig5759.14166.1 ID=prot_L-elsbetiae_contig5759.14166.1|Name=mRNA_L-elsbetiae_contig5759.14166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
MVDVLRKRCRHAECTTSPSFGVPGSNTAIFCAKHAEEGMADVRNKKCGFK
GGCGKYPSYAEEGAKSAVYCAGHATIGMVSVRKRSEQTKEG
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mRNA from alignment at L-elsbetiae_contig5759:8345..8617+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5759.14166.1 ID=mRNA_L-elsbetiae_contig5759.14166.1|Name=mRNA_L-elsbetiae_contig5759.14166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=273bp|location=Sequence derived from alignment at L-elsbetiae_contig5759:8345..8617+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTGATGTCCTCCGAAAGAGGTGCCGCCACGCCGAGTGCACAACATC
TCCATCATTCGGCGTCCCGGGTTCCAACACGGCGATTTTCTGCGCGAAGC
ACGCCGAAGAAGGCATGGCGGATGTGCGAAACAAGAAGTGCGGCTTCAAG
GGCGGCTGCGGCAAGTATCCTTCGTACGCGGAGGAAGGGGCCAAATCGGC
AGTGTATTGCGCGGGTCATGCCACCATCGGAATGGTATCGGTCCGCAAGA
GGAGCGAGCAGACCAAGGAGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5759:8345..8617+

>mRNA_L-elsbetiae_contig5759.14166.1 ID=mRNA_L-elsbetiae_contig5759.14166.1|Name=mRNA_L-elsbetiae_contig5759.14166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig5759:8345..8617+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTGATGTCCTCCGAAAGAGGTGCCGCCACGCCGAGTGCACAACATC
TCCATCATTCGGCGTCCCGGGTTCCAACACGGCGATTTTCTGCGCGAAGC
ACGCCGAAGAAGGCATGGCGGATGTGCGAAACAAGAAGTGCGGCTTCAAG
GGCGGCTGCGGCAAGTATCCTTCGTACGCGGAGGAAGGGGCCAAATCGGC
AGTGTATTGCGCGGGTCATGCCACCATCGGAATGGTATCGGTCCGCAAGA
GGAGCGAGCAGACCAAGGAGGGGATGGTTGATGTCCTCCGAAAGAGGTGC
CGCCACGCCGAGTGCACAACATCTCCATCATTCGGCGTCCCGGGTTCCAA
CACGGCGATTTTCTGCGCGAAGCACGCCGAAGAAGGCATGGCGGATGTGC
GAAACAAGAAGTGCGGCTTCAAGGGCGGCTGCGGCAAGTATCCTTCGTAC
GCGGAGGAAGGGGCCAAATCGGCAGTGTATTGCGCGGGTCATGCCACCAT
CGGAATGGTATCGGTCCGCAAGAGGAGCGAGCAGACCAAGGAGGGG
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