mRNA_L-elsbetiae_contig5759.14165.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5759.14165.1
Unique NamemRNA_L-elsbetiae_contig5759.14165.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5759.14165.1 vs. uniprot
Match: D7G4S8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S8_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 3.650e-35
Identity = 69/90 (76.67%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:  109 AGRKVGPGYNLDDFELVEEGTGDDGSWDDYGDFTDDPGEYSKPRGADTAYVEDLGTELKVTTTGTGGGFSAATPSDVVFSADPNLTPVFG 378
            AG   GPGYN+DDFELVEEGTGDDG+WDDY D++DDPG Y KPRGADTAYVEDLGTELKV T G G GFSAA  +  VFSADPNL+PV G
Sbjct:  153 AGWNDGPGYNMDDFELVEEGTGDDGTWDDYSDYSDDPGLYKKPRGADTAYVEDLGTELKVMTRGGGDGFSAAPAAKTVFSADPNLSPVSG 242
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5759.14165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4S8_ECTSI3.650e-3576.67DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5759contigL-elsbetiae_contig5759:5676..7278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue6.7e-31
Seed eggNOG ortholog2880.D7G4S8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0327@2759
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size386
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816617.070021-CDS-L-elsbetiae_contig5759:5676..57751622816617.070021-CDS-L-elsbetiae_contig5759:5676..5775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5759 5677..5775 -
1691683687.7224545-CDS-L-elsbetiae_contig5759:5676..57751691683687.7224545-CDS-L-elsbetiae_contig5759:5676..5775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5759 5677..5775 -
1622816617.081702-CDS-L-elsbetiae_contig5759:6993..72781622816617.081702-CDS-L-elsbetiae_contig5759:6993..7278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5759 6994..7278 -
1691683687.7357087-CDS-L-elsbetiae_contig5759:6993..72781691683687.7357087-CDS-L-elsbetiae_contig5759:6993..7278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5759 6994..7278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5759.14165.1prot_L-elsbetiae_contig5759.14165.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5759 5677..7278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5759.14165.1

>prot_L-elsbetiae_contig5759.14165.1 ID=prot_L-elsbetiae_contig5759.14165.1|Name=mRNA_L-elsbetiae_contig5759.14165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
ARGRGRGAGAASFGQGYPGRGGGRFSGGGGRGRGRVAGRKVGPGYNLDDF
ELVEEGTGDDGSWDDYGDFTDDPGEYSKPRGADTAYVEDLGTELKVTTTG
TGGGFSAATPSDVVFSADPNLTPVFGGA
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mRNA from alignment at L-elsbetiae_contig5759:5676..7278-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5759.14165.1 ID=mRNA_L-elsbetiae_contig5759.14165.1|Name=mRNA_L-elsbetiae_contig5759.14165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1603bp|location=Sequence derived from alignment at L-elsbetiae_contig5759:5676..7278- (Laminarionema elsbetiae ELsaHSoW15)
GCGCGTGGGAGGGGGAGGGGAGCCGGCGCGGCGTCCTTCGGCCAAGGGTA
CCCGGGCAGGGGAGGCGGGCGCTTCTCCGGTGGTGGGGGCCGCGGGCGTG
GCAGGGTGGCCGGCAGGAAGGTCGGGCCGGGCTACAACTTGGACGACTTC
GAGCTCGTGGAGGAAGGGACGGGAGACGACGGTAGCTGGGACGACTACGG
CGACTTCACCGATGACCCCGGGGAGTATTCGAAGCCCCGCGGCGCCGACA
CCGCATACGTCGAGGACCTCGGCACGGAGTTGAAGGCAAGTCGCCTAGAT
ATGGAAGGCTAAAGCTGACTCCTAGATGACTCGTAGATTCGTGTGCGGGC
GCAGACTCGGTACGCATAGATCCTGCCGCGGCTTGGGGTACCGGCCGTGC
CAGATGAGCGGAAGTTCAAGTTCAGCAAACTCTCGCTAGGAGCAACCTTT
TGAATCTATACCCCTAGACTATCCATTTGCATATTGCAAGTTTAAGTTTT
CAACTGAACGTCAGCGGTCTCCTGTGCGGGAATACGTGTGGAAAAGGTCA
ACAAGTCATTGATAGGCACCGGCACGGGGTGGGGAAAGCGCTGTTGATCC
CGATGGAGAGGAGAAGAACGCGGACCACGTGCGATCGACAGACCTACATG
CCTCCTCCGAACGTCTCGTGTGCTTGCTGCCACGGTTGTGTGAACGCTGG
CCCGCGAAGACGCTTGTGGGACTATTTTTTCCTTTTTCGGCCTGCGTGCT
GCGTACCGTAGGTGACACAAGATACCACACCCCTGGATAAATTTTCAAAG
CTCGATTCCTCTCCATCGAGAAGAATGACAGTGCCGAAAGGGGTGGCGTT
GGAAATATCTAGTCGAGGGCTGTCCAAAAATGTGTTGTTGGAGCTGGCAC
CTTCTTGGTTACGGAGTAATCGAGCTCTGAAATTCGATCCAGGGGGTGTG
GGGTATCTTGTGTCACCTACGGTACATACATACCTGATAAATACCCTCCA
AACATAACGAACGTATCGGTGCCCGAGGCTGCTGCTGCTGCTGCTGCTGC
TGCTATCTAAACTGCAATGAAAGCGACAGTGGCAGTTTTTCGACTTTTTC
CGGGTCGTTTTCGGCATTCGACCGGCCCGGCGGGGATTCGCGACAAACGG
GGGTCGAACGGCTTCCCTGCTTCTTGCCGCCCCATGAAGACGGCGTGCTT
CGGCCGTAAAATTAACATCCTTGTGGAAGCGCACTCGATTTCGACGCTTT
TTTTCGCCTTCATCGCCAAGCGTCAGTAGGTTTCACCGTGCATCCAGCCT
GACAACCACAACACGCAATAGAAAAGAAAACGGTCTATCTGTGTGCTCCT
AAATCTTACCATATGAGTATTTAGTACAGATACAGCTGGCGTTTATCGCC
GGTTGAATTTTTGACGTTTTTCGCCCGCAATTCATTCGCCCATTCTCCCT
GCAGCACGCCCCGTCATTCATCGACACCCCCACCCCCCGCTTTCACTACA
CAGGTGACGACAACGGGGACAGGGGGCGGCTTCTCCGCCGCCACTCCCTC
CGACGTTGTCTTCAGCGCGGACCCCAACCTGACCCCGGTCTTCGGAGGAG
CGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5759:5676..7278-

>mRNA_L-elsbetiae_contig5759.14165.1 ID=mRNA_L-elsbetiae_contig5759.14165.1|Name=mRNA_L-elsbetiae_contig5759.14165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig5759:5676..7278- (Laminarionema elsbetiae ELsaHSoW15)
GCGCGTGGGAGGGGGAGGGGAGCCGGCGCGGCGTCCTTCGGCCAAGGGTA
CCCGGGCAGGGGAGGCGGGCGCTTCTCCGGTGGTGGGGGCCGCGGGCGTG
GCAGGGTGGCCGGCAGGAAGGTCGGGCCGGGCTACAACTTGGACGACTTC
GAGCTCGTGGAGGAAGGGACGGGAGACGACGGTAGCTGGGACGACTACGG
CGACTTCACCGATGACCCCGGGGAGTATTCGAAGCCCCGCGGCGCCGACA
CCGCATACGTCGAGGACCTCGGCACGGAGTTGAAGGCGCGTGGGAGGGGG
AGGGGAGCCGGCGCGGCGTCCTTCGGCCAAGGGTACCCGGGCAGGGGAGG
CGGGCGCTTCTCCGGTGGTGGGGGCCGCGGGCGTGGCAGGGTGGCCGGCA
GGAAGGTCGGGCCGGGCTACAACTTGGACGACTTCGAGCTCGTGGAGGAA
GGGACGGGAGACGACGGTAGCTGGGACGACTACGGCGACTTCACCGATGA
CCCCGGGGAGTATTCGAAGCCCCGCGGCGCCGACACCGCATACGTCGAGG
ACCTCGGCACGGAGTTGAAGGTGACGACAACGGGGACAGGGGGCGGCTTC
TCCGCCGCCACTCCCTCCGACGTTGTCTTCAGCGCGGACCCCAACCTGAC
CCCGGTCTTCGGAGGAGCGGTGACGACAACGGGGACAGGGGGCGGCTTCT
CCGCCGCCACTCCCTCCGACGTTGTCTTCAGCGCGGACCCCAACCTGACC
CCGGTCTTCGGAGGAGCG
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