mRNA_L-elsbetiae_contig5753.14157.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5753.14157.1
Unique NamemRNA_L-elsbetiae_contig5753.14157.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5753.14157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5753contigL-elsbetiae_contig5753:1648..2458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size811
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5753.14157.1prot_L-elsbetiae_contig5753.14157.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5753 1670..2089 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816616.1047387-UTR-L-elsbetiae_contig5753:1647..16691622816616.1047387-UTR-L-elsbetiae_contig5753:1647..1669Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5753 1648..1669 +
1691683687.0130224-UTR-L-elsbetiae_contig5753:1647..16691691683687.0130224-UTR-L-elsbetiae_contig5753:1647..1669Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5753 1648..1669 +
1622816616.125679-UTR-L-elsbetiae_contig5753:2089..24581622816616.125679-UTR-L-elsbetiae_contig5753:2089..2458Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5753 2090..2458 +
1691683687.0359712-UTR-L-elsbetiae_contig5753:2089..24581691683687.0359712-UTR-L-elsbetiae_contig5753:2089..2458Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5753 2090..2458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816616.1160476-CDS-L-elsbetiae_contig5753:1669..20891622816616.1160476-CDS-L-elsbetiae_contig5753:1669..2089Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5753 1670..2089 +
1691683687.025944-CDS-L-elsbetiae_contig5753:1669..20891691683687.025944-CDS-L-elsbetiae_contig5753:1669..2089Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5753 1670..2089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5753.14157.1

>prot_L-elsbetiae_contig5753.14157.1 ID=prot_L-elsbetiae_contig5753.14157.1|Name=mRNA_L-elsbetiae_contig5753.14157.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
MIHILHPKSHLVHSTAPSTSERSNLPSRFNMPVPTPRKYTKCLLTLNRES
GPYIDYMFSHPTLHYDAWYTSRFHHRWTICTPFARVGCRRDLVCLVVVPT
VPRSKRTYSIPPSMRGITPKTKPLTSSYPPRTVLLRLLL*
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mRNA from alignment at L-elsbetiae_contig5753:1648..2458+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5753.14157.1 ID=mRNA_L-elsbetiae_contig5753.14157.1|Name=mRNA_L-elsbetiae_contig5753.14157.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=811bp|location=Sequence derived from alignment at L-elsbetiae_contig5753:1648..2458+ (Laminarionema elsbetiae ELsaHSoW15)
GGTATTGTTACGATCCCACGCCATGATACACATACTACACCCAAAATCAC
ACCTCGTTCACAGTACAGCCCCAAGCACCTCTGAACGATCCAACCTTCCA
AGTAGATTTAATATGCCAGTACCAACACCCAGAAAATATACAAAATGTCT
TCTAACTCTCAACAGAGAGTCTGGGCCCTACATAGACTACATGTTTTCAC
ACCCCACTCTGCACTACGACGCATGGTACACCTCAAGATTCCATCACAGG
TGGACGATTTGTACTCCTTTCGCGAGGGTGGGTTGTCGTCGAGATTTAGT
GTGTCTCGTTGTTGTACCGACCGTACCGAGATCCAAACGCACCTATTCCA
TCCCGCCGTCAATGCGAGGCATCACGCCCAAAACAAAACCGCTGACTTCT
TCTTATCCACCTCGCACAGTGCTTCTCCGTCTCCTCCTATAAATGTAGCC
CATTTTTTCTGCCTCTTGCGCTCGTCTCGTCTGATCCCGCCTCCTACGTT
TAATTGGGCTTTCAGCTAACTGCGCACCACAGATCCTTTTCTCTAGAGTC
TAAGTTACAAGAGTAGCTTCTCCTCGCCACTTCTCTTTCATGGCTCCTAT
CTTCGCAGTGCAAACCAACCGAATTGTTCATTATTCCTACACAATCTCTG
CCAGGTAAAGTGGCCTGTGTACATACATATGCCTGGTCACCAATATTCCC
CAACGGACTATCGAATAAACGAAGTCCGACACGCCTTTAGGCGTCAATGT
GCAGGTTATACAAATGAAACGCGCTTCGTGATACCCATTCCACGGCGTAA
GCTGATCAACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5753:1648..2458+

>mRNA_L-elsbetiae_contig5753.14157.1 ID=mRNA_L-elsbetiae_contig5753.14157.1|Name=mRNA_L-elsbetiae_contig5753.14157.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig5753:1648..2458+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATACACATACTACACCCAAAATCACACCTCGTTCACAGTACAGCCCC
AAGCACCTCTGAACGATCCAACCTTCCAAGTAGATTTAATATGCCAGTAC
CAACACCCAGAAAATATACAAAATGTCTTCTAACTCTCAACAGAGAGTCT
GGGCCCTACATAGACTACATGTTTTCACACCCCACTCTGCACTACGACGC
ATGGTACACCTCAAGATTCCATCACAGGTGGACGATTTGTACTCCTTTCG
CGAGGGTGGGTTGTCGTCGAGATTTAGTGTGTCTCGTTGTTGTACCGACC
GTACCGAGATCCAAACGCACCTATTCCATCCCGCCGTCAATGCGAGGCAT
CACGCCCAAAACAAAACCGCTGACTTCTTCTTATCCACCTCGCACAGTGC
TTCTCCGTCTCCTCCTATAAATGATACACATACTACACCCAAAATCACAC
CTCGTTCACAGTACAGCCCCAAGCACCTCTGAACGATCCAACCTTCCAAG
TAGATTTAATATGCCAGTACCAACACCCAGAAAATATACAAAATGTCTTC
TAACTCTCAACAGAGAGTCTGGGCCCTACATAGACTACATGTTTTCACAC
CCCACTCTGCACTACGACGCATGGTACACCTCAAGATTCCATCACAGGTG
GACGATTTGTACTCCTTTCGCGAGGGTGGGTTGTCGTCGAGATTTAGTGT
GTCTCGTTGTTGTACCGACCGTACCGAGATCCAAACGCACCTATTCCATC
CCGCCGTCAATGCGAGGCATCACGCCCAAAACAAAACCGCTGACTTCTTC
TTATCCACCTCGCACAGTGCTTCTCCGTCTCCTCCTATAA
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