mRNA_L-elsbetiae_contig5752.14154.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5752.14154.1
Unique NamemRNA_L-elsbetiae_contig5752.14154.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5752.14154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5752contigL-elsbetiae_contig5752:1526..2033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size508
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5752.14154.1prot_L-elsbetiae_contig5752.14154.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5752 1538..1849 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816615.9839573-UTR-L-elsbetiae_contig5752:1525..15371622816615.9839573-UTR-L-elsbetiae_contig5752:1525..1537Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5752 1526..1537 +
1691683686.9445426-UTR-L-elsbetiae_contig5752:1525..15371691683686.9445426-UTR-L-elsbetiae_contig5752:1525..1537Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5752 1526..1537 +
1622816616.012426-UTR-L-elsbetiae_contig5752:1849..20331622816616.012426-UTR-L-elsbetiae_contig5752:1849..2033Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5752 1850..2033 +
1691683686.9645386-UTR-L-elsbetiae_contig5752:1849..20331691683686.9645386-UTR-L-elsbetiae_contig5752:1849..2033Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5752 1850..2033 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816615.9990306-CDS-L-elsbetiae_contig5752:1537..18491622816615.9990306-CDS-L-elsbetiae_contig5752:1537..1849Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5752 1538..1849 +
1691683686.954669-CDS-L-elsbetiae_contig5752:1537..18491691683686.954669-CDS-L-elsbetiae_contig5752:1537..1849Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5752 1538..1849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5752.14154.1

>prot_L-elsbetiae_contig5752.14154.1 ID=prot_L-elsbetiae_contig5752.14154.1|Name=mRNA_L-elsbetiae_contig5752.14154.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MPVFSPARQIHPSPASFFATHRRRGKESVPGMNPLQSNTNKGTHETSNGN
NKTKPHYPKRCNGAKNLENIEEYVVNPITMILSLVDCKNVPINIPQQRPT
ESK*
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mRNA from alignment at L-elsbetiae_contig5752:1526..2033+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5752.14154.1 ID=mRNA_L-elsbetiae_contig5752.14154.1|Name=mRNA_L-elsbetiae_contig5752.14154.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=508bp|location=Sequence derived from alignment at L-elsbetiae_contig5752:1526..2033+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGGGTTTTCCATGCCAGTTTTCTCACCAGCCAGGCAGATTCATCCATC
CCCCGCCAGTTTTTTTGCCACACACAGAAGAAGAGGGAAGGAAAGTGTAC
CAGGCATGAACCCATTACAAAGTAATACAAACAAAGGAACACACGAAACC
TCAAACGGAAATAACAAAACAAAGCCACACTATCCGAAAAGGTGCAACGG
TGCCAAAAATCTGGAAAATATTGAGGAATATGTAGTAAATCCGATAACAA
TGATACTTTCGTTGGTTGACTGCAAGAATGTCCCCATAAACATACCCCAG
CAAAGGCCTACAGAATCGAAATAGAAAACCCGCTTTCGTCAGAATAGTAC
CCACCACGACACAACAAACCCAATCATCGATCGTGTGCTCGTGTGCTGAG
CTACTCTCTTTATCTCTCTATCTCCTTACTTTTACATATAGAGCACGTAT
GAAAGCGCTCAGACAATCAATTGATGCGTTGCAGCGTTGCAAAAGCGCAA
CAAAGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5752:1526..2033+

>mRNA_L-elsbetiae_contig5752.14154.1 ID=mRNA_L-elsbetiae_contig5752.14154.1|Name=mRNA_L-elsbetiae_contig5752.14154.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig5752:1526..2033+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCAGTTTTCTCACCAGCCAGGCAGATTCATCCATCCCCCGCCAGTTT
TTTTGCCACACACAGAAGAAGAGGGAAGGAAAGTGTACCAGGCATGAACC
CATTACAAAGTAATACAAACAAAGGAACACACGAAACCTCAAACGGAAAT
AACAAAACAAAGCCACACTATCCGAAAAGGTGCAACGGTGCCAAAAATCT
GGAAAATATTGAGGAATATGTAGTAAATCCGATAACAATGATACTTTCGT
TGGTTGACTGCAAGAATGTCCCCATAAACATACCCCAGCAAAGGCCTACA
GAATCGAAATAGATGCCAGTTTTCTCACCAGCCAGGCAGATTCATCCATC
CCCCGCCAGTTTTTTTGCCACACACAGAAGAAGAGGGAAGGAAAGTGTAC
CAGGCATGAACCCATTACAAAGTAATACAAACAAAGGAACACACGAAACC
TCAAACGGAAATAACAAAACAAAGCCACACTATCCGAAAAGGTGCAACGG
TGCCAAAAATCTGGAAAATATTGAGGAATATGTAGTAAATCCGATAACAA
TGATACTTTCGTTGGTTGACTGCAAGAATGTCCCCATAAACATACCCCAG
CAAAGGCCTACAGAATCGAAATAG
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