mRNA_L-elsbetiae_contig5750.14151.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5750.14151.1
Unique NamemRNA_L-elsbetiae_contig5750.14151.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5750.14151.1 vs. uniprot
Match: D8LKN8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKN8_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 1.970e-109
Identity = 160/167 (95.81%), Postives = 163/167 (97.60%), Query Frame = 1 
Query:   43 MSRKGSGSSTGIQTGKQSWAQRTVTITAPSRGCHLITSEIVRQMPELREFKVGMANVFLKHTSASITLNENADPDVRTDMEAALNEIVPVKWHREMFTHVLEGPDDMTGHVKSTLVGASIDIPVTNGKLALGTWQGVYLCEHRDSGGFGGGHARNIVVTVQGLTNDG 543
            MSRKGS +S GI TGK SWAQRTVT+TAPSRGCHLITSEIVRQMPELREFKVGMANVFLKHTSASITLNENADPDVRTDMEAALNEIVPVKWHREMFTHVLEGPDDMTGHVKS+LVGASIDIPVTNGKLALGTWQGVYLCEHRDSGGFGGGHARNIVVTVQGLTNDG
Sbjct:    1 MSRKGSSAS-GIMTGKPSWAQRTVTVTAPSRGCHLITSEIVRQMPELREFKVGMANVFLKHTSASITLNENADPDVRTDMEAALNEIVPVKWHREMFTHVLEGPDDMTGHVKSSLVGASIDIPVTNGKLALGTWQGVYLCEHRDSGGFGGGHARNIVVTVQGLTNDG 166
[Close]
BLAST of mRNA_L-elsbetiae_contig5750.14151.1 vs. uniprot
Match: D8LMU1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU1_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 2.500e-86
Identity = 121/154 (78.57%), Postives = 143/154 (92.86%), Query Frame = 1 
Query:   76 IQTGKQSWAQRTVTITAPSRGCHLITSEIVRQMPELREFKVGMANVFLKHTSASITLNENADPDVRTDMEAALNEIVPVKWHREMFTHVLEGPDDMTGHVKSTLVGASIDIPVTNGKLALGTWQGVYLCEHRDSGGFGGGHARNIVVTVQGLTN 537
            I+TG   WAQRT+T+TAPSRGCHLITSEI +Q+PELR F+VGMAN+FLKHTSAS+T+NENADPDVRTDME+ALN+IVPVKWH  MF H LEGPDDMTGHVKST+VGAS++IPV+NG LALGTWQGVYLCEHRD+GG+GGG AR+IV+T+QG+T+
Sbjct:   73 IKTGTAGWAQRTITVTAPSRGCHLITSEISKQVPELRSFRVGMANIFLKHTSASLTINENADPDVRTDMESALNQIVPVKWHNTMFRHTLEGPDDMTGHVKSTIVGASLNIPVSNGGLALGTWQGVYLCEHRDTGGWGGGFARDIVITIQGITS 226
[Close]
BLAST of mRNA_L-elsbetiae_contig5750.14151.1 vs. uniprot
Match: A0A835YU00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU00_9STRA)

HSP 1 Score: 261 bits (666), Expect = 6.640e-85
Identity = 118/168 (70.24%), Postives = 145/168 (86.31%), Query Frame = 1 
Query:   40 TMSRKGSG--SSTGIQTGKQSWAQRTVTITAPSRGCHLITSEIVRQMPELREFKVGMANVFLKHTSASITLNENADPDVRTDMEAALNEIVPVKWHREMFTHVLEGPDDMTGHVKSTLVGASIDIPVTNGKLALGTWQGVYLCEHRDSGGFGGGHARNIVVTVQGLTN 537
            + SR+ S   SS  I+TG   W Q+T+TITAPSRGCH+IT++I RQ+PEL+ F VG+A++F+KHTSAS+T+NENADPDVR DMEAALN IVP KWHRE FTH +EGPDDMTGHVKS+L+GAS+ +P+TNG+ ALGTWQG+YLCEHRDSGG+GGGHAR+I VT+QGL N
Sbjct:    2 STSRRSSANTSSADIKTGTAGWLQKTITITAPSRGCHIITNDITRQIPELQRFSVGVAHIFIKHTSASLTINENADPDVRVDMEAALNHIVPEKWHREFFTHTMEGPDDMTGHVKSSLLGASVSVPITNGRFALGTWQGIYLCEHRDSGGWGGGHARSITVTIQGLVN 169
[Close]
BLAST of mRNA_L-elsbetiae_contig5750.14151.1 vs. uniprot
Match: A0A7S2XZV0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZV0_9STRA)

HSP 1 Score: 234 bits (596), Expect = 6.960e-74
Identity = 109/166 (65.66%), Postives = 133/166 (80.12%), Query Frame = 1 
Query:   43 MSRKGSGSSTG-IQTGKQSWAQRTVTITAPSRGCHLITSEIVRQMPELREFKVGMANVFLKHTSASITLNENADPDVRTDMEAALNEIVPVKWHREMFTHVLEGPDDMTGHVKSTLVGASIDIPVTNGKLALGTWQGVYLCEHRDSGGFGGGHARNIVVTVQGLTN 537
            M R  S S  G I +G  SW Q+T++ITAPSRGCHLIT E+V Q+PELR F+VG A++F+KHTSAS+TLNENADPDV+ D+E ALN IVP  W+R+MF H  EG DDM GHVKS LVGA+I IP++NG   LGTWQG+YLCEHR+ GGFGGGH R IV+T+QG+T+
Sbjct:   33 MKRSSSSSQEGQIISGTTSWMQKTISITAPSRGCHLITREVVSQLPELRRFQVGTAHLFIKHTSASLTLNENADPDVQADLEKALNRIVPESWNRDMFVHTAEGDDDMPGHVKSALVGAAISIPISNGAFNLGTWQGIYLCEHRNQGGFGGGHNRKIVITLQGITS 198
[Close]
BLAST of mRNA_L-elsbetiae_contig5750.14151.1 vs. uniprot
Match: A0A024TUF5_9STRA (Secondary thiamine-phosphate synthase enzyme n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TUF5_9STRA)

HSP 1 Score: 221 bits (564), Expect = 1.210e-69
Identity = 98/153 (64.05%), Postives = 124/153 (81.05%), Query Frame = 1 
Query:   76 IQTGKQSWAQRTVTITAPSRGCHLITSEIVRQMPELREFKVGMANVFLKHTSASITLNENADPDVRTDMEAALNEIVPVKWHREMFTHVLEGPDDMTGHVKSTLVGASIDIPVTNGKLALGTWQGVYLCEHRDSGGFGGGHARNIVVTVQGLT 534
            I+TG  +W Q+ + +TAPSRG HL+T E+ +Q+PE+R F VGMA +F+KHTSAS++LNEN DPDVRTDME A+N IVP  W+R++F H +EG DDM  HVKSTL+GASI +P+TNG+  LGTWQG+YLCEHRD GG+G GH R IVVT+ GLT
Sbjct:    3 IKTGASAWFQKEIVLTAPSRGFHLVTDEVYKQVPEIRSFTVGMATLFVKHTSASLSLNENCDPDVRTDMEGAINRIVPESWNRDLFCHTMEGDDDMPAHVKSTLIGASIQVPLTNGRFNLGTWQGIYLCEHRDVGGWGHGHNRKIVVTLTGLT 155
[Close]
BLAST of mRNA_L-elsbetiae_contig5750.14151.1 vs. uniprot
Match: F0W2W7_9STRA (Uncharacterized protein AlNc14C11G1345 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W2W7_9STRA)

HSP 1 Score: 220 bits (560), Expect = 3.630e-69
Identity = 95/144 (65.97%), Postives = 121/144 (84.03%), Query Frame = 1 
Query:   97 WAQRTVTITAPSRGCHLITSEIVRQMPELREFKVGMANVFLKHTSASITLNENADPDVRTDMEAALNEIVPVKWHREMFTHVLEGPDDMTGHVKSTLVGASIDIPVTNGKLALGTWQGVYLCEHRDSGGFGGGHARNIVVTVQG 528
            W Q+ + +TAPSRG HL+TSEI RQ+PEL+E K+G+ N+F+KHTSAS+++NEN DPDVR DME A N IVP  W+R+MF H +EG DDM  HVKST++GASI++P+TNGK  +GTWQG+YLCEHR++GGFGGGH R IVVT+QG
Sbjct:    2 WFQKEIRLTAPSRGFHLVTSEIERQLPELQEVKIGLCNLFIKHTSASLSINENCDPDVRDDMEKAFNRIVPESWNRDMFKHTMEGDDDMPAHVKSTVIGASINVPITNGKFNVGTWQGIYLCEHRNAGGFGGGHERKIVVTIQG 145
[Close]
BLAST of mRNA_L-elsbetiae_contig5750.14151.1 vs. uniprot
Match: A0A067CHU1_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHU1_SAPPC)

HSP 1 Score: 219 bits (557), Expect = 1.490e-68
Identity = 96/153 (62.75%), Postives = 121/153 (79.08%), Query Frame = 1 
Query:   73 GIQTGKQSWAQRTVTITAPSRGCHLITSEIVRQMPELREFKVGMANVFLKHTSASITLNENADPDVRTDMEAALNEIVPVKWHREMFTHVLEGPDDMTGHVKSTLVGASIDIPVTNGKLALGTWQGVYLCEHRDSGGFGGGHARNIVVTVQGL 531
            G++TG  +W Q+ +T+ APSRG HL+T E+ +Q+PE+R F VG A +F+KHTSAS++LNEN DPDVR DME A+N IVP  W+RE F H +EG DDM  H+KSTL+GASI +PV+NGK  LGTWQG+YLCEHRD GG+G GH R IVVT+ GL
Sbjct:    3 GLRTGASAWFQKEITLKAPSRGFHLVTDEVYKQIPEIRHFSVGTATLFVKHTSASLSLNENCDPDVRIDMEGAMNRIVPESWNREFFRHTMEGDDDMPAHIKSTLIGASITVPVSNGKFNLGTWQGIYLCEHRDVGGWGNGHNRKIVVTINGL 155
[Close]
BLAST of mRNA_L-elsbetiae_contig5750.14151.1 vs. uniprot
Match: A0A8K1CHI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHI4_PYTOL)

HSP 1 Score: 215 bits (548), Expect = 2.630e-67
Identity = 96/146 (65.75%), Postives = 118/146 (80.82%), Query Frame = 1 
Query:   97 WAQRTVTITAPSRGCHLITSEIVRQMPELREFKVGMANVFLKHTSASITLNENADPDVRTDMEAALNEIVPVKWHREMFTHVLEGPDDMTGHVKSTLVGASIDIPVTNGKLALGTWQGVYLCEHRDSGGFGGGHARNIVVTVQGLT 534
            W Q+ + +TAP RG HL+T EI +Q+PELR+ KVGMAN+F+KHTSAS++LNEN D DVRTDME A N IVP  W+RE F H  EG DDM  H+KSTL+GAS++IP+TNGK  LGTWQG+YLCEHR+SGG+G GH R IV+T+QG T
Sbjct:    4 WFQKEIRLTAPGRGFHLVTHEIEKQLPELRQVKVGMANLFIKHTSASLSLNENCDSDVRTDMEGAFNRIVPESWNREFFKHTDEGDDDMPAHIKSTLIGASLNIPITNGKFNLGTWQGIYLCEHRNSGGWGNGHDRKIVITIQGST 149
[Close]
BLAST of mRNA_L-elsbetiae_contig5750.14151.1 vs. uniprot
Match: A0A024GMR8_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMR8_9STRA)

HSP 1 Score: 207 bits (526), Expect = 5.100e-64
Identity = 88/144 (61.11%), Postives = 116/144 (80.56%), Query Frame = 1 
Query:   97 WAQRTVTITAPSRGCHLITSEIVRQMPELREFKVGMANVFLKHTSASITLNENADPDVRTDMEAALNEIVPVKWHREMFTHVLEGPDDMTGHVKSTLVGASIDIPVTNGKLALGTWQGVYLCEHRDSGGFGGGHARNIVVTVQG 528
            W Q+ + +TAPSRG HL+TSEI RQ+PEL    +G+ N+F+KHTSAS+++NEN DPDVR D+E A N IVP  W+R++F H +EG DDM  HVK T++G+SI++P+T GK  LGTWQG+YLCEHR++GG+GGGH R IVVT+QG
Sbjct:    2 WLQKEIRLTAPSRGFHLVTSEIERQLPELHGINIGLCNLFIKHTSASLSINENCDPDVRDDLEKAFNRIVPEAWNRDIFKHTMEGDDDMPAHVKCTMIGSSINVPITKGKFNLGTWQGLYLCEHRNAGGYGGGHERKIVVTIQG 145
[Close]
BLAST of mRNA_L-elsbetiae_contig5750.14151.1 vs. uniprot
Match: A0A1Z5JU85_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JU85_FISSO)

HSP 1 Score: 206 bits (525), Expect = 5.080e-63
Identity = 95/157 (60.51%), Postives = 125/157 (79.62%), Query Frame = 1 
Query:   64 SSTGIQTGKQSWAQRTVTITAPSRGCHLITSEIVRQMPE-LREFKVGMANVFLKHTSASITLNENADPDVRTDMEAALNEIVPVKWHRE-MFTHVLEGPDDMTGHVKSTLVGASIDIPVTNGKLALGTWQGVYLCEHRDSGGFGGGHARNIVVTVQG 528
            S T   T K  W Q  +T+TAP RGCHLIT++I +   E +R+ ++G+ N+F++HTSAS+T+NENADPDVRTDME ALN+IVP +W+R+  F H +EG DDM GHVKS+L+G S+ IP+  G+LALGTWQG+YL EHRD GG+GGGHARNI++T+QG
Sbjct:   48 SDTETSTMKPLWFQHEITVTAPKRGCHLITADIQKAAGESIRQCQIGLCNIFVQHTSASLTINENADPDVRTDMETALNKIVPAQWNRDGTFRHTMEGDDDMPGHVKSSLMGVSLTIPIRQGRLALGTWQGIYLNEHRDQGGWGGGHARNIIITIQG 204
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5750.14151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKN8_ECTSI1.970e-10995.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LMU1_ECTSI2.500e-8678.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YU00_9STRA6.640e-8570.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XZV0_9STRA6.960e-7465.66Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A024TUF5_9STRA1.210e-6964.05Secondary thiamine-phosphate synthase enzyme n=3 T... [more]
F0W2W7_9STRA3.630e-6965.97Uncharacterized protein AlNc14C11G1345 n=1 Tax=Alb... [more]
A0A067CHU1_SAPPC1.490e-6862.75Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
A0A8K1CHI4_PYTOL2.630e-6765.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024GMR8_9STRA5.100e-6461.11Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A1Z5JU85_FISSO5.080e-6360.51Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5750contigL-elsbetiae_contig5750:1701..6358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score324.3
Seed ortholog evalue3.3e-86
Seed eggNOG ortholog2880.D8LKN8
KEGG koko:K08773
KEGG Pathwayko04014,ko05200,ko05212,map04014,map05200,map05212
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Uncharacterised protein family UPF0047
EggNOG OGsCOG0432@1,KOG3267@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Ec32 ortholog descriptionUncharacterised protein family UPF0047
Ec32 orthologEc-03_001010.1
Exons5
Model size878
Cds size504
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816615.7323248-UTR-L-elsbetiae_contig5750:1700..20321622816615.7323248-UTR-L-elsbetiae_contig5750:1700..2032Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5750 1701..2032 -
1691683686.8026967-UTR-L-elsbetiae_contig5750:1700..20321691683686.8026967-UTR-L-elsbetiae_contig5750:1700..2032Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5750 1701..2032 -
1622816615.8098814-UTR-L-elsbetiae_contig5750:6316..63581622816615.8098814-UTR-L-elsbetiae_contig5750:6316..6358Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5750 6317..6358 -
1691683686.8689802-UTR-L-elsbetiae_contig5750:6316..63581691683686.8689802-UTR-L-elsbetiae_contig5750:6316..6358Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5750 6317..6358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816615.7446146-CDS-L-elsbetiae_contig5750:2032..22001622816615.7446146-CDS-L-elsbetiae_contig5750:2032..2200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5750 2033..2200 -
1691683686.813704-CDS-L-elsbetiae_contig5750:2032..22001691683686.813704-CDS-L-elsbetiae_contig5750:2032..2200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5750 2033..2200 -
1622816615.755439-CDS-L-elsbetiae_contig5750:3444..35241622816615.755439-CDS-L-elsbetiae_contig5750:3444..3524Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5750 3445..3524 -
1691683686.8225985-CDS-L-elsbetiae_contig5750:3444..35241691683686.8225985-CDS-L-elsbetiae_contig5750:3444..3524Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5750 3445..3524 -
1622816615.7683468-CDS-L-elsbetiae_contig5750:4394..44371622816615.7683468-CDS-L-elsbetiae_contig5750:4394..4437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5750 4395..4437 -
1691683686.8307025-CDS-L-elsbetiae_contig5750:4394..44371691683686.8307025-CDS-L-elsbetiae_contig5750:4394..4437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5750 4395..4437 -
1622816615.7804718-CDS-L-elsbetiae_contig5750:5057..52371622816615.7804718-CDS-L-elsbetiae_contig5750:5057..5237Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5750 5058..5237 -
1691683686.839212-CDS-L-elsbetiae_contig5750:5057..52371691683686.839212-CDS-L-elsbetiae_contig5750:5057..5237Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5750 5058..5237 -
1622816615.7935684-CDS-L-elsbetiae_contig5750:6283..63161622816615.7935684-CDS-L-elsbetiae_contig5750:6283..6316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5750 6284..6316 -
1691683686.856337-CDS-L-elsbetiae_contig5750:6283..63161691683686.856337-CDS-L-elsbetiae_contig5750:6283..6316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5750 6284..6316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5750.14151.1prot_L-elsbetiae_contig5750.14151.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5750 2033..6316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5750.14151.1

>prot_L-elsbetiae_contig5750.14151.1 ID=prot_L-elsbetiae_contig5750.14151.1|Name=mRNA_L-elsbetiae_contig5750.14151.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=168bp
MSRKGSGSSTGIQTGKQSWAQRTVTITAPSRGCHLITSEIVRQMPELREF
KVGMANVFLKHTSASITLNENADPDVRTDMEAALNEIVPVKWHREMFTHV
LEGPDDMTGHVKSTLVGASIDIPVTNGKLALGTWQGVYLCEHRDSGGFGG
GHARNIVVTVQGLTNDG*
back to top

mRNA from alignment at L-elsbetiae_contig5750:1701..6358-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5750.14151.1 ID=mRNA_L-elsbetiae_contig5750.14151.1|Name=mRNA_L-elsbetiae_contig5750.14151.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4658bp|location=Sequence derived from alignment at L-elsbetiae_contig5750:1701..6358- (Laminarionema elsbetiae ELsaHSoW15)
CTCCATAGCTGATAGGCGACATCGCTCGAAAATAGCAAGACCATGAGCCG
CAAGGGGAGTGGTTCATCGACTGGGGTAGGTTCATCTCTCAAAATGTGAA
ATGATGAGGCGAGAATACCATGAGGAGTTGGATTGATGACAGTCCCGCCG
ATATCTGATACGGCGTGCAGACTGCAGAATTGTGGGGAATTGTGTGCTTG
CAGTAGCACAACATCACCATCATGCATCGCTTCCGCGCCGAAATATTGCG
CTCTGGGGTTTTTTCCAATCTTCGCGTTGTACAGATTATATCTCACTTCA
TAAAGATATTGCGTGTGACACATGCCTTGTGGTCGCGCGCGTCGTACATA
AAGCGTCGTGTGTAGTTGTACATTGTACAAGGTTCCCCTTCGGGAGGTCA
GCGCGTGCCTCCTGGGAGTGACGCAAGTCGAAATACCCACAAACAACAAC
AAACAACGTAGGACACGAGGTAGCACTTCACACACAAAGTGTTGCACGAA
GAAAAAAACGCACGAAAAAATAATAAAAAAAAAGGCTGTGTGCCGAGATT
CGAACCCACGTCCGGATATTCGATGGTTGGACGCAAGAAATTCCCCGCAA
CATCCCGCGAGATTTTTGTTTGCATGTACCATCTGCCGTGTGTGGCCTGC
AACATCTGCGTTTTACTCTCCAAATATGTGCACACCGTCTTGCCGTGTGT
GGACGGACGTGCAGCCAGCAGTGTGAACGTATGCAAATAAATGCGTGAAG
AGCAGAAAAGAGACTCCGAAGAAAAAGATCAAACACCTGTTTTAGTTTTT
CCGGAATTGGTACCCCGCAAAATAGAGCCAGTTTCGGCGGCTTTCGGTGG
CCATAACTCGCGCCCCCGGCTTCAGATGAACCCCACACATGCGTGTTAAT
GCACCGACGGGTCTTCTGAGCATCTTGCAGAATTTGTTTTGACTCAAAAC
GATGTCCCAGCAGAGAAAATTAGACAGAATCAGCAAAAAAGTTGAAATGG
TACTTAGACATACATACAAGACCTAGATAGTATTTAGTCTGTGTACATAA
TGCTCTTTTGTGACTTCTGAAACACAGATCGTCGGCACCGGCTATAACGC
ACGAGTTTGTGTGCCTTGCAGATTCAGACAGGGAAGCAATCGTGGGCTCA
GAGAACGGTGACCATCACCGCTCCTTCTCGAGGGTGTCACCTCATAACCA
GCGAGATCGTTCGGCAGATGCCCGAGCTCAGGGAATTCAAGGTCGGGATG
GCCAACGTTTTCCTCAAGCACACGTCTGCATCCATCACCCTCAACGAGAA
CGTGAGATGGTAGATGGCCTAGGGTTTGTAGGTTATCCTGCCCTGCTTCC
TTAGTTTTTGTTTTTAGCCGTGTGGGCCTATAAATCACTCAATAATCACC
CTCAACGAGATCGTGAGATTATAGTGAAAGGAGGGCTGGTAGCTGATGTC
ACTGTACGCGGAGTAAACAAATAATCTCAAGTAGAGCTGACACCGACGCC
ATCATTTTCGCTTGAAAATGCCCCGAGCAAACAAACCCTCGCCTGTGCTG
TCAATATATTTCGTCCGTGGGCAACGCGGCACAGGGATTAACAGAGGCTG
TACATCAGATCTGTTTGTGTTGGCAGTTAGATATCCACCAATCGAGTGTG
GTGTTTCCAGCGCTCACGTCTCCCCTGCTTTTCATGTCTCAACGTTGCGT
TTCGGAACCAGATCGTGTATGGGTTTTGCTTGCTTGGTTTGTTAAAGGCC
CACGATCGTCAACTTTTTATATCTGCTGAAGAGGCCACGATTCGCTGGTA
TTGTATAGTCATGTACGTGAACATGTGAATGCGGCTATGTAGATCCCGCA
CCAGTTGTCTTCATCGCGGCTTCCGCTTAATTCAGTGTACTCGTTTTTAT
TGTCCTTTTAAAACTCTGCAGGCAGATCCCGACGTCCGGACCGACATGGA
AGCGGCGTTGAACGGTGCGTAAAGAAACAGCTATAAGACTATCGTTATTA
TTATATACTCCAGTATGTTGTTATCATTATTATAGGAGCAATTATTATAC
TTCGAAGGAGTTTTTCTCACATAAGCCCGATCGCTCGAACCCGTGGTCGC
AGACGTAGGCTTCCCTTCCAATACCATGGCTACAGTATACCTAAAACGAG
ACCTGAGCACGCATTGAGCGCTTCTCGTAGCATGTTTTGGTAGAAATACC
CTGACCCTTCACAATTTGTTCGGCGTTACAGTAACGGTTACGGGTAGGGC
TAGGAGAAGAGGTGGCGTTCGGTCGGATGCCCCACACACATGCTGCGCAA
GCGAAGCCTTCTGGAAGGTATTTCCACAAAGGGCCTTTGATTCAGACGTT
CCTTTTCTCGACGTGAGGCAACACTCATGTACATATATATGTATGAGTGT
GGCTGTTTCGAACGAATACCATGCCGATTTGCGACCGTCGAACTATCACG
TGTTCTCCGTCGATGGTAGGTATGTATATTGCACCAGTTAACACCACGCC
CGAGAGTACCATGTAACATCCATCTCAGGGTTAAGCAAGGGCCCTCACCA
TGTATGGCGCATCCAACCGGGCAGATGAGGGGGGGTTGTCCCACGTCTCC
GGTGGGGGTGCAGCAACGGATACCCACGTGAAACCGCGGGGACCCCTTTG
AGTCGAGGAGGCGTTGTCGGCCGCAAATTCCGGTGACGTTCTGCAGTTGA
TCCAGAGCCCGACCTGGTTTCGTTGTCGTCGTGTTTTTTGTTTTCCACGA
GCCGCTGCCTGGACCATCCTCTCTTTAATCCGTGTTCCACCGGTGTGCCG
TGCTTGCTGCTATCGCGCTTGCTGTCGGGGGCAGAGATCGTCCCAGTAAA
GTGGCACCGCGAGATGTTCACCCACGTGCTGGAAGGGCCGGACGATATGA
CGGGACACGTCAAGGTGCTGACCAATATTACAAGTGGCACGAATGCCCCT
TAGGTTCACAGCTTGTTCGAAGCCAACTTATTTACCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCAGACCCACACACACAAAACAAA
AGCCCGCCAACCCGACGCCACCCCCCNNNNNNNNNNGGCAAAGCGTCGGA
CAATAATACCAATTGCCCCCATCCCCCTTAGGTGTTCCGCCTTGTTGAAG
GCCACTTTCTTTCCCCCCCCCCCCCCCCCCTCACCTGAGTTCGGCACGGA
ATAGATGAAACAAAAAAGGATGCACGCCGGACCGAACATGGCAGACTCCC
GCGAAAACGCCGAGACGATTGGGCAAAGCGTACTGTTTACACATTGATAA
TAGATATTTGGGGCTACGCCATATGCGCCCTTTGATTGTTCAAAGCGTGT
GTGCGCGGGACCACGTTTTGGCCTGCGGACCCACGCGCCCGCGAAAGCGA
CGCAGCCGCGTTCGCGGGGATTTCTCGGCCCCACGGCCCCGGCCGGACGT
CGGTGCGGGTTAGGGTTAGGGTTGGGGTGGGTCGGTCACGTGTGTGCCTT
CTGGTTCTGAGTGTGAACCATCTGCAAAACATCGTGTTAGCGTAAATAGC
TATTATCAGTGTGTAACCCAACTTCGGGCAAAGCCCGCGGCAGCCGGGGA
CGCCGACGTTTTTTTTTTCCTCCCATCATTGGCTTATTCGTCGTCTGCCC
CACTGGCCCCCTTCCTCCCCTACGACTAGCTAGACGACCCAACTGGGATC
ACACAGGAGGGGGGGAGGGTGAACCCCCTCCTGCGGTGCCTGCCTCTTAT
GTTTTTATCGCGAGCAGGGTTCAGCTCTCCCCACCCTCGTCAACAGTGAA
GTCGAAGTATTATTTACTAACGAAATCGCCTTCATTTTTCCAGCCGATGT
GTGATGGCGCGAATGAAATCGCCCGCCCGATTGTAATTTCGTCGCCCCCG
AGGTAGGTTGATCCACTACTGTACCTCCGCTGTCTACATTTCTGTCTAGT
CTGGTCCTTATTTATAGGACCCCCCCCCCCCCCCCCCCCTCAGCTCTCGG
GTTTTCGCATTTTGCTATTTCCCTGGTTTGGGCGGTGCGCGNNNNNNNNN
NGGTGTCGCAATCAAGCGTGCCGCCGGCTGTCCCGCGGGCGTCAGTTGGG
TTCACGCAAGCGGTCCCCCCCCCCCCAACTTTATGCTCTCGTGATTTCGA
ATTTTCAGAGTACTCTGGTGGGCGCGTCGATCGACATCCCGGTCACGAAC
GGCAAGCTCGCACTGGGCACGTGGCAAGGTGTGTACTTGTGCGAGCACCG
AGACAGCGGGGGCTTCGGCGGGGGGCACGCGAGGAACATTGTTGTCACCG
TGCAGGGTCTCACCAACGATGGATGACTCGGGGCTCCGTAGTATTTTTTT
GCTTCGCTCCGGTGCATAGAGCCGTCATCGACAATGTTTTTTGTTTTTTG
TGGGGCTGGCTGGATTCATTGCAGAGCCTCCCTTGCCAGTGACGGCTCAC
GTTTGGCCTCGTTGGCTGGATTCATTGCAGAGCCTCCCTTGCCAGTGACG
GCTCACGTTTGGCCTCGTTGTATGTAGGGCCTCGCCAACAATGGCGGATT
AATTGCAGGATGCCTCTGTCAGGCTTAACCAAGTTGCAAAGAGGTGCCTT
TGCAGACCTTCGCCAAGCGATGACTGACGGGTACAGGGCGGGACACGGCG
AATAAATT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5750:1701..6358-

>mRNA_L-elsbetiae_contig5750.14151.1 ID=mRNA_L-elsbetiae_contig5750.14151.1|Name=mRNA_L-elsbetiae_contig5750.14151.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1008bp|location=Sequence derived from alignment at L-elsbetiae_contig5750:1701..6358- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCCGCAAGGGGAGTGGTTCATCGACTGGGATGAGCCGCAAGGGGAG
TGGTTCATCGACTGGGATTCAGACAGGGAAGCAATCGTGGGCTCAGAGAA
CGGTGACCATCACCGCTCCTTCTCGAGGGTGTCACCTCATAACCAGCGAG
ATCGTTCGGCAGATGCCCGAGCTCAGGGAATTCAAGGTCGGGATGGCCAA
CGTTTTCCTCAAGCACACGTCTGCATCCATCACCCTCAACGAGAACATTC
AGACAGGGAAGCAATCGTGGGCTCAGAGAACGGTGACCATCACCGCTCCT
TCTCGAGGGTGTCACCTCATAACCAGCGAGATCGTTCGGCAGATGCCCGA
GCTCAGGGAATTCAAGGTCGGGATGGCCAACGTTTTCCTCAAGCACACGT
CTGCATCCATCACCCTCAACGAGAACGCAGATCCCGACGTCCGGACCGAC
ATGGAAGCGGCGTTGAACGGCAGATCCCGACGTCCGGACCGACATGGAAG
CGGCGTTGAACGAGATCGTCCCAGTAAAGTGGCACCGCGAGATGTTCACC
CACGTGCTGGAAGGGCCGGACGATATGACGGGACACGTCAAGAGATCGTC
CCAGTAAAGTGGCACCGCGAGATGTTCACCCACGTGCTGGAAGGGCCGGA
CGATATGACGGGACACGTCAAGAGTACTCTGGTGGGCGCGTCGATCGACA
TCCCGGTCACGAACGGCAAGCTCGCACTGGGCACGTGGCAAGGTGTGTAC
TTGTGCGAGCACCGAGACAGCGGGGGCTTCGGCGGGGGGCACGCGAGGAA
CATTGTTGTCACCGTGCAGGGTCTCACCAACGATGGATGAAGTACTCTGG
TGGGCGCGTCGATCGACATCCCGGTCACGAACGGCAAGCTCGCACTGGGC
ACGTGGCAAGGTGTGTACTTGTGCGAGCACCGAGACAGCGGGGGCTTCGG
CGGGGGGCACGCGAGGAACATTGTTGTCACCGTGCAGGGTCTCACCAACG
ATGGATGA
back to top