mRNA_L-elsbetiae_contig5743.14142.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5743.14142.1
Unique NamemRNA_L-elsbetiae_contig5743.14142.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5743.14142.1 vs. uniprot
Match: C3Y976_BRAFL (Uncharacterized protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Y976_BRAFL)

HSP 1 Score: 58.5 bits (140), Expect = 1.400e-7
Identity = 28/65 (43.08%), Postives = 37/65 (56.92%), Query Frame = 3 
Query:    6 CRDHCGADEWKYYILIDGDWCFCENYDMVFSPLTTSKECTTPCSGDGDQECGGTYPAMNVYQKTG 200
            CR  CG   +   +L +G  CFC +  M+     TSKEC+TPCSGD  Q CGG     +VY+ +G
Sbjct:  284 CRQACGRSGYVMSLLTNGTSCFCTSDAML---NMTSKECSTPCSGDFSQICGGKNNVYSVYRSSG 345
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BLAST of mRNA_L-elsbetiae_contig5743.14142.1 vs. uniprot
Match: K1Q0M9_CRAGI (Plasminogen n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1Q0M9_CRAGI)

HSP 1 Score: 55.5 bits (132), Expect = 1.580e-6
Identity = 28/65 (43.08%), Postives = 36/65 (55.38%), Query Frame = 3 
Query:    3 TCRDHCGADEWKYYILIDGDWCFCENYDMVFSPLTTSKECTTPCSGDGDQECGGTYPAMNVYQKT 197
            TCR  C   + KYY L  GD CFC N         +  EC TPC+GD +Q CGG++  + VY+ T
Sbjct:  200 TCRKTCLKADTKYYGLEAGDECFCGN---KLGKKKSDSECKTPCTGDKEQVCGGSW-RLAVYKNT 260
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BLAST of mRNA_L-elsbetiae_contig5743.14142.1 vs. uniprot
Match: UPI00148AD966 (uncharacterized protein LOC105345065 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148AD966)

HSP 1 Score: 55.5 bits (132), Expect = 1.610e-6
Identity = 28/65 (43.08%), Postives = 36/65 (55.38%), Query Frame = 3 
Query:    3 TCRDHCGADEWKYYILIDGDWCFCENYDMVFSPLTTSKECTTPCSGDGDQECGGTYPAMNVYQKT 197
            TCR  C   + KYY L  GD CFC N         +  EC TPC+GD +Q CGG++  + VY+ T
Sbjct:  603 TCRKTCLKADTKYYGLEAGDECFCGN---KLGKKKSDSECKTPCTGDKEQVCGGSW-RLAVYKNT 663
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BLAST of mRNA_L-elsbetiae_contig5743.14142.1 vs. uniprot
Match: UPI001EE555DA (uncharacterized protein LOC124259887 isoform X1 n=2 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE555DA)

HSP 1 Score: 50.4 bits (119), Expect = 9.390e-5
Identity = 25/63 (39.68%), Postives = 35/63 (55.56%), Query Frame = 3 
Query:    3 TCRDHCGADEWKYYILIDGDWCFCENYDMVFSPLTTSKECTTPCSGDGDQECGGTYPAMNVYQ 191
             C + CGA    Y  LI G +CFC +     +  T +  C+TPC+GDG Q CGG    ++VY+
Sbjct:   55 VCTNLCGAYTAIYAGLISGRFCFCGDKAPNATYATGAASCSTPCTGDGSQMCGGEN-YLSVYE 116
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5743.14142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
C3Y976_BRAFL1.400e-743.08Uncharacterized protein n=2 Tax=Branchiostoma flor... [more]
K1Q0M9_CRAGI1.580e-643.08Plasminogen n=1 Tax=Crassostrea gigas TaxID=29159 ... [more]
UPI00148AD9661.610e-643.08uncharacterized protein LOC105345065 n=1 Tax=Crass... [more]
UPI001EE555DA9.390e-539.68uncharacterized protein LOC124259887 isoform X1 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5743contigL-elsbetiae_contig5743:3665..8254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size347
Cds size117
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5743.14142.1prot_L-elsbetiae_contig5743.14142.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5743 4987..8110 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816614.534219-UTR-L-elsbetiae_contig5743:3664..37291622816614.534219-UTR-L-elsbetiae_contig5743:3664..3729Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5743 3665..3729 +
1691683685.8707674-UTR-L-elsbetiae_contig5743:3664..37291691683685.8707674-UTR-L-elsbetiae_contig5743:3664..3729Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5743 3665..3729 +
1622816614.5458794-UTR-L-elsbetiae_contig5743:4965..49861622816614.5458794-UTR-L-elsbetiae_contig5743:4965..4986Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5743 4966..4986 +
1691683685.889308-UTR-L-elsbetiae_contig5743:4965..49861691683685.889308-UTR-L-elsbetiae_contig5743:4965..4986Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5743 4966..4986 +
1622816614.5817077-UTR-L-elsbetiae_contig5743:8110..82541622816614.5817077-UTR-L-elsbetiae_contig5743:8110..8254Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5743 8111..8254 +
1691683685.9264119-UTR-L-elsbetiae_contig5743:8110..82541691683685.9264119-UTR-L-elsbetiae_contig5743:8110..8254Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5743 8111..8254 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816614.557181-CDS-L-elsbetiae_contig5743:4986..50981622816614.557181-CDS-L-elsbetiae_contig5743:4986..5098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5743 4987..5098 +
1691683685.9013886-CDS-L-elsbetiae_contig5743:4986..50981691683685.9013886-CDS-L-elsbetiae_contig5743:4986..5098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5743 4987..5098 +
1622816614.5704324-CDS-L-elsbetiae_contig5743:8105..81101622816614.5704324-CDS-L-elsbetiae_contig5743:8105..8110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5743 8106..8110 +
1691683685.911177-CDS-L-elsbetiae_contig5743:8105..81101691683685.911177-CDS-L-elsbetiae_contig5743:8105..8110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5743 8106..8110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5743.14142.1

>prot_L-elsbetiae_contig5743.14142.1 ID=prot_L-elsbetiae_contig5743.14142.1|Name=mRNA_L-elsbetiae_contig5743.14142.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=39bp
MVFSPLTTSKECTTPCSGDGDQECGGTYPAMNVYQKTG*
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mRNA from alignment at L-elsbetiae_contig5743:3665..8254+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5743.14142.1 ID=mRNA_L-elsbetiae_contig5743.14142.1|Name=mRNA_L-elsbetiae_contig5743.14142.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4590bp|location=Sequence derived from alignment at L-elsbetiae_contig5743:3665..8254+ (Laminarionema elsbetiae ELsaHSoW15)
AGACATGTCGCGATCATTGCGGAGCCGATGAGTGGAAGTATTACATCTTG
ATCGACGGCGACTGGGTGAGTCCCGATGATGTCGCTGTGAATATAAGTAT
AGAAGTATGGCCTTGCAGTGATGCGCCCACATAGACTGGCGATCAATCTG
GAGGAATTTACAACTGGCTGGTCCACATACGCATTTGTCTTCCCAGTGTT
ACTGGAATTCAGCTTTCAAGGGGGCGCATACGGGATTGGGGTTTCTGGGA
GGGACTTCCTGGGACGTACAAAGAGAAAGACCTTCAGTGTAGGCCGATAC
GGAGAGGTCGAAAGCTTAGCTTGGGGAAAGTCATCCAAGCCAGGAGTCAG
AGGACATGTGGATAAGGTCCTTGGCTGCATATTAGGACAAACAATTAGGC
TTCAACTTCTGACATTCGTACTGGACTGGAAGAGCTCAGCCGAGAGAGAG
TCAGTCCGCCGATGCACAGCACGATTTTGGGTAGTTTGGCGGCAGAGTTA
GATAGCATCCATCCACAAAGAAACTCCACACACCGGAAAGCATACGGTCC
AGCCGTCGTGTAGGGCACTAACTGCAGCTGATGCTGTCTACTGGTGCTGG
CCTCGCCGAGCCCCTCCGTGCGTGTTCGAAGGGAGCTCTGATTTGACGCT
CACAGAGCGATTCATGGCCTGAAACCCGCAACGTCGATAGTCATGAGTAG
TGGATATCCCCCCCTTTGGTTTGTTTCGTCTGGGGTGGTGACTGTGAGCT
ACAAAGGCTGGCGCGCCGGTGCGAGCGTGTGCCTCGATAGGGTGGGGCTT
TTGGTAGAGGGGGTCTTTTTTTTGCGTGTTTTGGTCTGGAGGGCCACTCC
AGCAGTGTGTTGACGCCCTGAATCGTTCGTGTACTCCACCACTAGAGCAT
CGATTGGCTTGGTTCTTCTTGCTCAACATTCGACAGGTATCAGAGCTACA
AATCTGAGCTTGCTGCGTTGCAAAATCAGTATTCAGCTGCGAGCACTTGT
CAAGAAAGATCTCATTTCAGCGCCTCTTTGAAAACGATTCCAAATAAGGC
TGGTCTTTCTGAATAGACTAAAGCCGCAACCCCATTTATTTGAGGCCCGG
TCTGATGTCGCCGTGAATAGATGTATGGCCTTGCAATGATGCGCCCACAT
AGGCTGTGGCAATCAACCTGGAGGGATTTACAACTGGCTGGTCCACATAT
ATGCATTTCTCTTCCTGAATAAAGCCACAACCCCATTTATTTGTTTTTGA
CTTGTTTGCCTTTTCGCGCTCTTTTGCCGCTGTGATGCCATCCCAAACAA
GTGCTTCTGTGAGAATTACGATATGGTTTTTAGCCCGCTGACCACATCGA
AAGAGTGCACAACACCGTGCTCCGGGGATGGAGATCAAGAATGCGGTGGC
ACATACCCGGCGATGAACGTGTACCAGAAAACAGGTGGGTGGCTTGCCGA
ACGAAGTGCTTTTCATCGGAAATCGCGATTTCTCCTATCGAACACGATTG
ATTGCTGTCCTTCACTTCGCGCCAGTCATTTCTTGTCCCCAAGTACCGCC
ATTGGAAATATCCATCCATGCATTATGCATGCATGCTACTGATACAGCTG
GCGCTCGCTGACAAGATAAGTAAAAAATGTGTCGAGGCTTGGTTTCCTAT
TTCAGGCGGAAAAGCCAGCCTTCGTTGCCAATTGTTTTATACCAAGTTTC
TCATTTTTTACGTTCAACACGAAACCCTGGGCTCATTCTTGAAACAGTCA
CTCCAAAGTTAGGTTCCCACGCTGCTTGTTTCCGTCACAAGTGCCCATAT
TATGTCTCAACACGTGTCCTAACATTGGGCGGTCTGTGTCGAGACAATGG
TAATGGTTTACCCGGTCGTTCTCTTGTATCCGTTTCCCGCCACGGCCACA
CGGAACGTAAACGTATCTGCCTCGCTGTCGCCCAAGGCCAAACGAAAGGA
ACCCCTTTTAAATCATTGCACTCTCTGCCCCCATTTCCTCTTTGGTCCAC
ATCAAGTATCAACGTCCGAACCCTCAATGACAATCGTGGTATGTATGTAT
ATATGTACAACACCCATTACGGCGGTTTTCTGCCACTCGAGCTTTCATCA
GAGTGCAGGACAAACGGTAATGGTATCTGCGCCACTAGCCGGGTGGGCTT
CACAAGGGAAGCCCTACCGCGCCGCACCAAAAATACAAAAAGCACTTACT
TTCACGCTACACGTAGAGGGGCTAGGGGTGGTGGGTGCCGACGCTCTGCA
CTAAGTGCCCGCTCAGAGTTTCGCTTTCTTATAGATATATATACGAAGTA
AGAGTTCAAATGTATGTGTTTCTCATGAGCGGGCACTTATATAGTGTATG
GTAGTGTTCGTATTTCATTCACTCTCGAATTCGACCAGTTTCTTTTTTTT
TTATGTTTCTTATGTTGTTTAGTTCTAGATTGAGCGGTGTGTGTTTCTTA
GGTCTCACTTTTCTCATTTGTTTCGGAAATCTGAAAGCCGTCTATGTTTC
TGATGAGGATGTTCCCTAGCAGCGGGCGCAAACTGTATATTATTTGAGCC
GCATTTAATCACGAGCGCAACTGAATCATACAATGAAGAGTTTATTTTCC
TCAACATGTAGACGACACAAAGCGCCATGGGAAGAAGCATTCATGGCGCA
AGCTAAATTGATGGTCACATACGGTATGTCCGCGGTCAAATGTTCACAAT
TTCTTCCTGCACTTTGGTGCACTTTCCGTCGCACACAGGTGGTTCCATAA
ACAAAAAGTACCGGCAAACACCCTGTCTCCAGGCGCAGGTCCCTATACAA
AATCGTTTTTTGATTTTTTCCTTCATTCATGATAACCCTAACCTTCACCT
GAATATTTGTTCGCTTTTCCCTGGGAAGGTTGTTTGTTGGAATACGATTA
TGAGACCGGATTATTACAGCTCTTGGAATCTTCCAGACAAAACCTTTTCC
CGATTTGGAATGAAGCAAATATCCAAGAAGTTATCGGTGAAAAACTGTAT
TTTAGAGGCCATCTTGTTTGCTTTTTCATATGATAATCAACCGCAATCGA
TTCCCCTCGAAAAACTTGGGGACGAAACTTTTTCCGGTTTAAAAATAATT
TTCGTTCGCGAGATATTGTACGTTTTGTTTGCACTCTTTTTCCAATGTAG
TGTGGAGGTGCGGCAAAAAGGCTAGGGGCTCCGTGGTACAGGAAGGTGCT
TTGTGGCCGAAAATGATTTTTTTTTTCGTGGATATTTGGCCGAAAAGATT
TTTTTCCCTCAAACTCGAAAAATGTTTAACGCTGTCGGCAGTCACGATGA
TTATCGTTGTTTCACGTTCCAAATTTCTCTTCGACAAGAGAGAGTTATCG
CACAAAACGCGATTGGACATACATCCATTTGCAGCCATACCAACAGAGAT
GTGTGCTCCAACTGTCGTGAAGCCAAGTTTGGAGAACAAAGGTGAGATGC
GGGGCTCACACGCTTCGAAACCAAAGGATTTCAAATTGGAATCGCGGAAG
AAGTATTCCCTTTTTATCGCCCGGATTTCGACACGAAATTCCATTTATTT
TGGAATTCCTGGGGTTTTAAGCGTGTGAGGCCCACGCCTCACTGTTGCTC
CCCAAACTTGGCTCCGAGACAGTCACGCCATTGGAGCACACATCCCTGTT
GGTAAGGCTGCAAACGGATAATGTCTGGGAGGCGAGCCCTGAGCAAAAAA
GGGCGATTCTCAGCCAAAACAAATTCGTCTGCGTGCCCTCAGCGGTTTGG
TGAGATTGAGATTCGATTTACGAATTGAGATTGAGATGGTTTTTGGCTAT
TGACAAAAAGGGTGGGGTATGGACAAAATGGGGTCTTAGATTATGTTTTA
GCAGAGGAGGAGGGGGTCGACCCCGTAGAGTTGAGGACAAAAAGGGGTCG
TCTGCGGGAAGGGTGCTTTTGGCGGCCGTACCTGCACTGTTTCGGCGCAT
CGAAGACGAGAAAAACGGTTGGGAGATGTGCCCACATACTGTTGTGCGCG
GTGGGTGGGGGCGTCGAAATGTGATTTGGGGGCATTTTCGTGTGCGTGCG
TGAGTGTTGGAAAATGAGGGTCTGATTTCGTCTAACAAACGATAGGGTCG
ACCCTTGTTTGTCTATTTCTCTACATACGAACACGACACGAAATGTCATC
GGCCACTTTCATCTACCACTTTTGTTCCGATGCCCAGCCCGTTTGCTGCG
TGGCTGTGAAGCAGTTGTCGGTATCGCTCCGGTGTTTCGCCGACAAGGAC
GTGTCTTTGATTATTGTCCCATGTACCTCCCCTTTCCGCCGGATAGACTC
GGAGTTCACCTTTCTGCTGTGATCCTGTTTGCTGGACCGCAGGGGATGGG
CGAAAAGGGCTCACTGACACAAACATGCTAACATTTGCGAACCCCTACCC
TTGATACCCGATGCCACGTCGTTTCAAAACTGTGCACGCAGGTTGAGAAA
AACGATCGCCGACTACTACGTGTTTCTACACGTCACCAAGCGAGAGTGAG
CAGCGATCCTCGCAGCCTTATATGGTCGATGAACGGCGCAGATCAGCGAC
ACAGGCGCGTGTTTGTCCGGCAGCATGTTTTTGAAGCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5743:3665..8254+

>mRNA_L-elsbetiae_contig5743.14142.1 ID=mRNA_L-elsbetiae_contig5743.14142.1|Name=mRNA_L-elsbetiae_contig5743.14142.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=234bp|location=Sequence derived from alignment at L-elsbetiae_contig5743:3665..8254+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTTTTAGCCCGCTGACCACATCGAAAGAGTGCACAACACCGTGCTC
CGGGGATGGAGATCAAGAATGCGGTGGCACATACCCGGCGATGAACGTGT
ACCAGAAAACAGATGGTTTTTAGCCCGCTGACCACATCGAAAGAGTGCAC
AACACCGTGCTCCGGGGATGGAGATCAAGAATGCGGTGGCACATACCCGG
CGATGAACGTGTACCAGAAAACAGGTTGAGTTGA
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