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Homology
BLAST of mRNA_L-elsbetiae_contig5739.14134.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE) HSP 1 Score: 353 bits (907), Expect = 1.250e-106 Identity = 193/367 (52.59%), Postives = 237/367 (64.58%), Query Frame = 2
Query: 344 VMPGPQAAELLKSLEIAILSVLS-TPSRARRATAGAKGKIPNPLETLKVLAADCEWSKVFGTPRGVAPAVPLPIKGEEVHDPRATMLLNPELRKTFGALWVLGDGNCLWRSVTCALWGTDEFWCQLKLVVLGWSSLNVDALVGTGGPL--HYNDIHYEGHIYKKHVVRGADGKHDHRDDDYRSMLLENIAWFCKDKRWAGDLSLLLVAECLGVVTKMPIPTDMLGRKKKDAPSESPPRDTS-------TMDDKRYSRQYIPTGGLKGIVLRGSSGESDIAVEEIAVTVTNGEGGVVGDRALCGIPTIMADTELGTLLHYAAIVSTDPDQHVRRPLPMAEVAPPLWSKFDETVARDTASERLEWEKRQ 1414
VM A+ L L A L V++ T RARR AGAKG+IP+ E L+ +AA+C W KVFGTP GV P V P KG+E++DP+ATM+L PELRKTF ALWV GDGNC WRS+ ALWGTDE+W QLKL VL WS++NV+ALVG GG L IHY+ I+ KH+ RG DGK DHR DD SMLLE+IA F +++W G L+ +L E G+V KMP P DM R + D + S D RYS +PT G K I+LRG S E DI VEEIA+T+ + + VVGD +L IP I ADT L L H+AAIV DPD HVRRP PM++ PPL +KFD++ A A E EW +RQ
Sbjct: 7 VMTDTLASRNLSRLGSAALGVVNNTSQRARRENAGAKGRIPSQREYLRAIAAECTWPKVFGTPEGVVPTVARPGKGQEMYDPKATMILTPELRKTFVALWVEGDGNCFWRSMAKALWGTDEYWRQLKLAVLAWSAVNVEALVGEGGALFGRAGIIHYDDEIHAKHIYRGPDGKVDHRLDDDASMLLESIAKFSANRQWGGCLAGVLFTERTGLVLKMPHPFDMRARIRADTSGAAAKATASYGGGSEDEFGDHRYSFTKVPTAGRKEIILRGVSDEEDIVVEEIAITMASYDSAVVGDGSLSDIPVIEADTNLNHLNHFAAIVCADPDVHVRRPFPMSKAGPPLHAKFDKSDAERRAKEEAEWAERQ 373
BLAST of mRNA_L-elsbetiae_contig5739.14134.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE) HSP 1 Score: 120 bits (302), Expect = 9.160e-25 Identity = 84/269 (31.23%), Postives = 127/269 (47.21%), Query Frame = 2
Query: 632 ALWVLGDGNCLWRSVTCALWGTDEFWCQLKLVVLGWSSLNVDALVGTGGPLHYNDIHYE-------GHIYKKHVVRGADGKHDHRDDDYRSMLLENIAWFCKDKRWAGDLSLLLVAECLGVVTKMPIPTDMLGRKKKDAPSESPP------RDTSTMDDKRYSRQYIPTGGLKGIVLRGSSGESDIAVEEIAVTVTNGEGGVVGDRALCGIPTIMADTELGTLLHYAAIVSTDPDQHVRRPLPMAEVAPPLWSKFDETVARDTASERLE 1399
ALWV GDGNC WRS+ LW +DE+W QLKLVVL W++ + + LV G L +H+ G+ Y V A MLL ++A+ C+D W GD +LLL ++ L + K+ P D++ RK+ D S +P R +DD R S+ ++ + + ++G G +A + +T G+ V L + + T +H+AA+ D P P+ APPL+ + ARD RLE
Sbjct: 8 ALWVRGDGNCCWRSLAKCLWESDEYWSQLKLVVLAWAAAHAEELVSEGRVLSDFSLHFSDDIHAGLGYAYSATCVGAAPSV-----AQTSRMLLASVAYDCEDTVWGGDFTLLLASQALKITVKLLSPNDVMVRKR-DESSATPGTIRGAGRKGDKVDDTRLSQTFLADDAVSCLHIQG--GGRMVAEATVVLTSCTGQASV---GELDNLVEVTKSTACPRGVHFAAVSKKD---RSTPPFPLVRAAPPLFQALAKQ-ARDAERLRLE 261
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 5 |
Model size | 1761 |
Cds size | 1413 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816613.6978197-UTR-L-elsbetiae_contig5739:1632..1978 | 1622816613.6978197-UTR-L-elsbetiae_contig5739:1632..1978 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5739 1633..1978 + |
1691683685.365494-UTR-L-elsbetiae_contig5739:1632..1978 | 1691683685.365494-UTR-L-elsbetiae_contig5739:1632..1978 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5739 1633..1978 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816613.7128234-CDS-L-elsbetiae_contig5739:1978..2206 | 1622816613.7128234-CDS-L-elsbetiae_contig5739:1978..2206 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5739 1979..2206 + |
1691683685.3760915-CDS-L-elsbetiae_contig5739:1978..2206 | 1691683685.3760915-CDS-L-elsbetiae_contig5739:1978..2206 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5739 1979..2206 + |
1622816613.7241251-CDS-L-elsbetiae_contig5739:2501..3284 | 1622816613.7241251-CDS-L-elsbetiae_contig5739:2501..3284 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5739 2502..3284 + |
1691683685.3862433-CDS-L-elsbetiae_contig5739:2501..3284 | 1691683685.3862433-CDS-L-elsbetiae_contig5739:2501..3284 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5739 2502..3284 + |
1622816613.7341554-CDS-L-elsbetiae_contig5739:3720..3955 | 1622816613.7341554-CDS-L-elsbetiae_contig5739:3720..3955 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5739 3721..3955 + |
1691683685.397165-CDS-L-elsbetiae_contig5739:3720..3955 | 1691683685.397165-CDS-L-elsbetiae_contig5739:3720..3955 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5739 3721..3955 + |
1622816613.7436452-CDS-L-elsbetiae_contig5739:3976..4104 | 1622816613.7436452-CDS-L-elsbetiae_contig5739:3976..4104 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5739 3977..4104 + |
1691683685.4129024-CDS-L-elsbetiae_contig5739:3976..4104 | 1691683685.4129024-CDS-L-elsbetiae_contig5739:3976..4104 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5739 3977..4104 + |
1622816613.7558215-CDS-L-elsbetiae_contig5739:4308..4347 | 1622816613.7558215-CDS-L-elsbetiae_contig5739:4308..4347 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5739 4309..4347 + |
1691683685.4212842-CDS-L-elsbetiae_contig5739:4308..4347 | 1691683685.4212842-CDS-L-elsbetiae_contig5739:4308..4347 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5739 4309..4347 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5739.14134.1 >prot_L-elsbetiae_contig5739.14134.1 ID=prot_L-elsbetiae_contig5739.14134.1|Name=mRNA_L-elsbetiae_contig5739.14134.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=471bp
MPGPQAAELLKSLEIAILSVLSTPSRARRATAGAKGKIPNPLETLKVLAA DCEWSKVFGTPRGVAPAVPLPIKGEEVHDPRATMLLNPELRKTFGALWVL GDGNCLWRSVTCALWGTDEFWCQLKLVVLGWSSLNVDALVGTGGPLHYND IHYEGHIYKKHVVRGADGKHDHRDDDYRSMLLENIAWFCKDKRWAGDLSL LLVAECLGVVTKMPIPTDMLGRKKKDAPSESPPRDTSTMDDKRYSRQYIP TGGLKGIVLRGSSGESDIAVEEIAVTVTNGEGGVVGDRALCGIPTIMADT ELGTLLHYAAIVSTDPDQHVRRPLPMAEVAPPLWSKFDETVARDTASERL EWEKRQTQRAAQRAEAAAESAAAAAAERVARNQKESEEARAAATAAAAAA AAAERVAGDQEGEEAPAAAAAAAAAAAAAERLARDQKEDEEVRAAATAAT TAAAAAAKIKDKVSATAELAE back to topmRNA from alignment at L-elsbetiae_contig5739:1633..4347+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5739.14134.1 ID=mRNA_L-elsbetiae_contig5739.14134.1|Name=mRNA_L-elsbetiae_contig5739.14134.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2715bp|location=Sequence derived from alignment at L-elsbetiae_contig5739:1633..4347+ (Laminarionema elsbetiae ELsaHSoW15) ATGCGACCCTCCTACCTACAAGTGTCGCCGTTGTGTGCTAGTATGACCTA
CATTTGGGCTCTCAACGGTGGTCGTCTACTGGTTGTCTTTTCGTAGGTAG
AGGCGAGCACATCACGTCCAGCACAACGCCGCACAACACCAGCCCGCTAC
GAAACCCGCGGGTATCGTTTAATTTTAAACGATACCCACGGGATCGATTT
CCACATTTCCCGGCATTTACTTTACTGCACCAAGTGTAACCCACCGTTGT
GTGTCTACTGGTTGTGCTTGTGTTCGGGTTTGGGCTTGCGGTAGGGGCGA
GGACAACACCAGCACGCTGCCGCCCACACCCAGCGGCAGCGCTGTAATGC
CAGGCCCACAGGCCGCGGAACTACTCAAGAGCCTCGAGATCGCGATCTTA
TCGGTGTTGTCTACCCCCTCGCGGGCACGACGAGCTACTGCTGGCGCGAA
AGGTAAAATCCCAAATCCTCTCGAGACGCTGAAGGTGCTCGCTGCGGACT
GCGAGTGGTCGAAGGTGTTCGGCACTCCACGGGGCGTGGCGCCCGCAGTA
CCTCTGCCAATCAAAGGGGAAGAGGTACGCAAGAGGTACAGCAGTAGCAG
ACCGCGGGGTAGACCATGTCATCATGTTGGATCTTCAGCTCACATTTGTC
TTCCTCCATCCTGCTGGAAAGTTGGTGTAGTACACGTCCCTCGCGTTTCA
TTTTAGACAAGATTTCCAACAATGATGACGCCATCCAAGGCTGCAGCACG
TAGATGCAGAAAGGAGGTATCAGGTTTGTCGTTCCCGCGAGTTACAGTAG
TTCCCATGCTTGGGTCCAGGGTTTGCTCACAACTCTTACTTTGAGCTCTG
CCTCGTTCTTCGCAAGCAGGTACATGACCCAAGGGCAACGATGCTCCTCA
ATCCGGAGTTGCGGAAGACGTTTGGGGCGCTGTGGGTTTTGGGGGACGGG
AATTGCTTGTGGCGTTCCGTCACATGTGCGCTGTGGGGAACAGATGAGTT
CTGGTGCCAGCTCAAGCTCGTAGTACTTGGGTGGAGTTCTTTGAACGTTG
ATGCTCTGGTGGGGACGGGTGGCCCCCTCCATTACAACGATATCCACTAC
GAAGGCCACATATACAAAAAGCATGTGGTACGTGGCGCCGATGGCAAACA
CGACCATCGGGATGACGACTACCGTTCAATGCTCCTGGAGAACATTGCAT
GGTTTTGCAAAGACAAGAGGTGGGCTGGGGACCTTTCCCTTCTGTTGGTC
GCGGAGTGCCTCGGCGTAGTGACAAAGATGCCAATTCCTACAGACATGTT
GGGTAGGAAGAAAAAAGACGCACCGAGTGAGAGCCCGCCGCGTGACACGT
CGACCATGGACGATAAGCGATACTCGCGGCAGTACATCCCAACAGGTGGC
CTTAAAGGCATAGTCTTGCGTGGGTCTAGCGGCGAGTCAGATATTGCGGT
CGAAGAGATCGCCGTGACGGTCACCAACGGCGAAGGCGGTGTTGTCGGAG
ACAGGGCACTCTGTGGCATCCCCACGATAATGGCTGACACAGAGCTTGGA
ACCTTGCTACACTACGCGGCAATAGTGAGCACGGACCCGGACCAACACGT
CAGGCGTCCGCTGCCGATGGCCGAAGTTGCCCCGCCGCTATGGTCGAAGT
TTGTAAGTTTCTTTTAATAATCTCTGCCTACAGGTAGAGCACTGCTATCT
GTCATGCATCCCCGCACCCCCAATGGCCCCACGCACTGGTGTCTGAACGG
TCGGAGCAATTCTACAATACGGGTGACTTACATTAAGAATCGTTCCGATC
CCTCCCTCCAGCATGTTGAGTTTCGGTAGTTATCCAACTGGTCAAGACAA
GACCAGGGACAGGTATAGCGCGGAGAGCCCGGCGCCATCGACGTACCCAG
CTCCACTGATAGCAAGTACAAACAAACGCAACGAATCCTGTCGATTAAAC
ATGCATACAACGGTTGAGCATTAGACTCAATCTGCTACATGTCGGACCAG
TTAGTAGTTCTGCCGGGACTCTCATGTTGAACCAAATCATGTGACTTGCT
CGCTTCGTGTGTCTTCGTGTGTGTTGTTGCTACTGCAGGATGAGACCGTA
GCGCGTGACACTGCGTCGGAGAGGCTTGAGTGGGAAAAGAGGCAGACACA
GAGGGCGGCACAGAGGGCTGAAGCAGCGGCGGAGTCAGCTGCGGCGGCAG
CAGCGGAACGAGTAGCTAGAAATCAGAAGGAGAGCGAAGAAGCTCGTGCG
GCGGCAACAGCCGCTGCAGCAGCGGCAGCAGCAGCGGAACGGGTAGCTGG
AGATCAGGAGGGTGAAGAAGCTCGTTCGGCGGCAACGGCGGCAGCGGCGG
CGGCAGCGGCGGCGGCAGCGGCGGCGGCAGCAGCGGAACGGTTGGCTAGA
GATCAGAAAGAGGACGAAGAAGTTCGTGCGGCGGCAACGGCGGCTACAAC
AGCGGCGGCGGCGGCGGCAAAGGTAAGCTAATGGCGTGGGTGTTTGTTGT
GTTCGATTGATGTGTGGATAGATATTGAACAGGTTGACGTGTGGATATTG
AACTCGCGACCTACCTCGCCGCGGCGTCGCCATCCAAACACGCAAACATG
TACGTCCCGATCGCTGCTTGAACGTCCGTGTGTTATGTCCGGCCCCTGTT
TGACACCTGCATTTATGGTGGAACAGATCAAGGACAAAGTTTCTGCCACA
GCGGAGTTGGCGGAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5739:1633..4347+ >mRNA_L-elsbetiae_contig5739.14134.1 ID=mRNA_L-elsbetiae_contig5739.14134.1|Name=mRNA_L-elsbetiae_contig5739.14134.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2826bp|location=Sequence derived from alignment at L-elsbetiae_contig5739:1633..4347+ (Laminarionema elsbetiae ELsaHSoW15) ATGCCAGGCCCACAGGCCGCGGAACTACTCAAGAGCCTCGAGATCGCGAT CTTATCGGTGTTGTCTACCCCCTCGCGGGCACGACGAGCTACTGCTGGCG CGAAAGGTAAAATCCCAAATCCTCTCGAGACGCTGAAGGTGCTCGCTGCG GACTGCGAGTGGTCGAAGGTGTTCGGCACTCCACGGGGCGTGGCGCCCGC AGTACCTCTGCCAATCAAAGGGGAAGAGATGCCAGGCCCACAGGCCGCGG AACTACTCAAGAGCCTCGAGATCGCGATCTTATCGGTGTTGTCTACCCCC TCGCGGGCACGACGAGCTACTGCTGGCGCGAAAGGTAAAATCCCAAATCC TCTCGAGACGCTGAAGGTGCTCGCTGCGGACTGCGAGTGGTCGAAGGTGT TCGGCACTCCACGGGGCGTGGCGCCCGCAGTACCTCTGCCAATCAAAGGG GAAGAGGTACATGACCCAAGGGCAACGATGCTCCTCAATCCGGAGTTGCG GAAGACGTTTGGGGCGCTGTGGGTTTTGGGGGACGGGAATTGCTTGTGGC GTTCCGTCACATGTGCGCTGTGGGGAACAGATGAGTTCTGGTGCCAGCTC AAGCTCGTAGTACTTGGGTGGAGTTCTTTGAACGTTGATGCTCTGGTGGG GACGGGTGGCCCCCTCCATTACAACGATATCCACTACGAAGGCCACATAT ACAAAAAGCATGTGGTACGTGGCGCCGATGGCAAACACGACCATCGGGAT GACGACTACCGTTCAATGCTCCTGGAGAACATTGCATGGTTTTGCAAAGA CAAGAGGTGGGCTGGGGACCTTTCCCTTCTGTTGGTCGCGGAGTGCCTCG GCGTAGTGACAAAGATGCCAATTCCTACAGACATGTTGGGTAGGAAGAAA AAAGACGCACCGAGTGAGAGCCCGCCGCGTGACACGTCGACCATGGACGA TAAGCGATACTCGCGGCAGTACATCCCAACAGGTGGCCTTAAAGGCATAG TCTTGCGTGGGTCTAGCGGCGAGTCAGATATTGCGGTCGAAGAGATCGCC GTGACGGTCACCAACGGCGAAGGCGGTGTTGTCGGAGACAGGGCACTCTG TGGCATCCCCACGATAATGGCTGACACAGAGCTTGGAACCTTGCTACACT ACGCGGCAATAGTGAGCACGGACCCGGACCAACACGTCAGGCGTCCGCTG CCGATGGCCGAAGTTGCCCCGCCGCTATGGTCGAAGTTTGTACATGACCC AAGGGCAACGATGCTCCTCAATCCGGAGTTGCGGAAGACGTTTGGGGCGC TGTGGGTTTTGGGGGACGGGAATTGCTTGTGGCGTTCCGTCACATGTGCG CTGTGGGGAACAGATGAGTTCTGGTGCCAGCTCAAGCTCGTAGTACTTGG GTGGAGTTCTTTGAACGTTGATGCTCTGGTGGGGACGGGTGGCCCCCTCC ATTACAACGATATCCACTACGAAGGCCACATATACAAAAAGCATGTGGTA CGTGGCGCCGATGGCAAACACGACCATCGGGATGACGACTACCGTTCAAT GCTCCTGGAGAACATTGCATGGTTTTGCAAAGACAAGAGGTGGGCTGGGG ACCTTTCCCTTCTGTTGGTCGCGGAGTGCCTCGGCGTAGTGACAAAGATG CCAATTCCTACAGACATGTTGGGTAGGAAGAAAAAAGACGCACCGAGTGA GAGCCCGCCGCGTGACACGTCGACCATGGACGATAAGCGATACTCGCGGC AGTACATCCCAACAGGTGGCCTTAAAGGCATAGTCTTGCGTGGGTCTAGC GGCGAGTCAGATATTGCGGTCGAAGAGATCGCCGTGACGGTCACCAACGG CGAAGGCGGTGTTGTCGGAGACAGGGCACTCTGTGGCATCCCCACGATAA TGGCTGACACAGAGCTTGGAACCTTGCTACACTACGCGGCAATAGTGAGC ACGGACCCGGACCAACACGTCAGGCGTCCGCTGCCGATGGCCGAAGTTGC CCCGCCGCTATGGTCGAAGTTTGATGAGACCGTAGCGCGTGACACTGCGT CGGAGAGGCTTGAGTGGGAAAAGAGGCAGACACAGAGGGCGGCACAGAGG GCTGAAGCAGCGGCGGAGTCAGCTGCGGCGGCAGCAGCGGAACGAGTAGC TAGAAATCAGAAGGAGAGCGAAGAAGCTCGTGCGGCGGCAACAGCCGCTG CAGCAGCGGCAGCAGCAGCGGAACGGGTAGCTGGAGATCAGGAGGGTGAA GAAGCTCGATGAGACCGTAGCGCGTGACACTGCGTCGGAGAGGCTTGAGT GGGAAAAGAGGCAGACACAGAGGGCGGCACAGAGGGCTGAAGCAGCGGCG GAGTCAGCTGCGGCGGCAGCAGCGGAACGAGTAGCTAGAAATCAGAAGGA GAGCGAAGAAGCTCGTGCGGCGGCAACAGCCGCTGCAGCAGCGGCAGCAG CAGCGGAACGGGTAGCTGGAGATCAGGAGGGTGAAGAAGCTCCGGCGGCG GCAGCGGCGGCGGCAGCGGCGGCGGCAGCAGCGGAACGGTTGGCTAGAGA TCAGAAAGAGGACGAAGAAGTTCGTGCGGCGGCAACGGCGGCTACAACAG CGGCGGCGGCGGCGGCAAAGCGGCGGCGGCAGCGGCGGCGGCAGCGGCGG CGGCAGCAGCGGAACGGTTGGCTAGAGATCAGAAAGAGGACGAAGAAGTT CGTGCGGCGGCAACGGCGGCTACAACAGCGGCGGCGGCGGCGGCAAAGAT CAAGGACAAAGTTTCTGCCACAGCGGAGTTGGCGGAGATCAAGGACAAAG TTTCTGCCACAGCGGAGTTGGCGGAG back to top
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