mRNA_L-elsbetiae_contig5739.14133.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5739.14133.1
Unique NamemRNA_L-elsbetiae_contig5739.14133.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5739.14133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5739contigL-elsbetiae_contig5739:346..2007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size721
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5739.14133.1prot_L-elsbetiae_contig5739.14133.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5739 364..843 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816613.8648112-UTR-L-elsbetiae_contig5739:345..3631622816613.8648112-UTR-L-elsbetiae_contig5739:345..363Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5739 346..363 +
1691683685.4646885-UTR-L-elsbetiae_contig5739:345..3631691683685.4646885-UTR-L-elsbetiae_contig5739:345..363Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5739 346..363 +
1622816613.8875034-UTR-L-elsbetiae_contig5739:843..9851622816613.8875034-UTR-L-elsbetiae_contig5739:843..985Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5739 844..985 +
1691683685.4820852-UTR-L-elsbetiae_contig5739:843..9851691683685.4820852-UTR-L-elsbetiae_contig5739:843..985Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5739 844..985 +
1622816613.9001005-UTR-L-elsbetiae_contig5739:1926..20071622816613.9001005-UTR-L-elsbetiae_contig5739:1926..2007Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5739 1927..2007 +
1691683685.492477-UTR-L-elsbetiae_contig5739:1926..20071691683685.492477-UTR-L-elsbetiae_contig5739:1926..2007Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5739 1927..2007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816613.8768148-CDS-L-elsbetiae_contig5739:363..8431622816613.8768148-CDS-L-elsbetiae_contig5739:363..843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5739 364..843 +
1691683685.473654-CDS-L-elsbetiae_contig5739:363..8431691683685.473654-CDS-L-elsbetiae_contig5739:363..843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5739 364..843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5739.14133.1

>prot_L-elsbetiae_contig5739.14133.1 ID=prot_L-elsbetiae_contig5739.14133.1|Name=mRNA_L-elsbetiae_contig5739.14133.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=160bp
MNLFASPDSPFELDPRVHANALVSGELCLKPPAQSRFCVRRTLLCSGSHL
PLGEVLQIGSSVLPTVICDSALYSRPTRRPGFLKASPVSSHPVEKIEALK
PRLEGCRVSGVRRRRPLPTGSEAGCAALARLNSSLLPTAAGTLERATFEQ
LQRSTPMLH*
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mRNA from alignment at L-elsbetiae_contig5739:346..2007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5739.14133.1 ID=mRNA_L-elsbetiae_contig5739.14133.1|Name=mRNA_L-elsbetiae_contig5739.14133.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1662bp|location=Sequence derived from alignment at L-elsbetiae_contig5739:346..2007+ (Laminarionema elsbetiae ELsaHSoW15)
AATGCTTTATTCCGGATCATGAACTTATTTGCGAGCCCAGATAGCCCATT
TGAGTTGGACCCGCGGGTACATGCAAATGCCCTGGTGTCTGGGGAGCTGT
GCCTGAAGCCCCCTGCTCAATCGCGGTTCTGTGTCCGGAGAACTCTGCTG
TGTTCGGGATCGCATTTGCCCCTTGGTGAAGTGTTGCAAATTGGCAGCTC
TGTTCTACCAACTGTGATCTGTGATTCTGCTCTCTACTCTCGTCCGACGC
GACGGCCGGGCTTCCTGAAGGCGTCGCCCGTCTCCTCACACCCTGTGGAG
AAGATCGAGGCACTTAAACCTCGTTTAGAGGGCTGCCGCGTGAGCGGTGT
TCGGCGCCGGAGGCCCCTGCCTACTGGGAGCGAGGCGGGTTGCGCAGCTC
TAGCGCGGCTCAACAGCAGCCTGCTGCCGACGGCTGCCGGAACTTTGGAA
AGAGCCACTTTCGAGCAACTCCAGCGGTCGACGCCGATGCTCCACTGAGC
TGGAGGTTTGGGGAAAGCGGCAGCTCGGTCTGGGAAGCGCTGGAGAGGGA
GAGGTGGTGGTTCTGCGGAAAGGACTTGAATTGACCCGCTGGAGCCATCT
GAGCCCTGGAGACAGCAGCGCGCTATTGTACCCTGCCGAGGTAACATGTA
ACGACCTGGCTGCAGGCGTAGAGTCCTCCTGTAGTGCTTGGCAGACGCCC
TGCAATGGGCCGTGCTCTAATTTTTCTCCCCGGCCGAGCTTGGCTTAATC
ACTTCCCACCCCCTGTCGGCAGCCGGTAAACGAACCCCATGGGTATCGTT
TATTAAACGAGACCCCGGGGACAAAAACCGAAGAAATCCCGGATTTTCAC
AGCAGGCAGTATAGATCTGAGCGCGCCGCGAGTACCCAAAGTTGCCCAAA
GTTGCAGCACGCTGAATCGAGCGCCGTAGGCACGCCGCGGCCGCCGCAGG
CATCAGCACCACAACTTCATCTCTCAGAGACTATTCACCCAACGTTTTGG
CGCTCGAGCATCGGTGCCCAGCGAGTAACAAATCAAACACACGGGAGTGT
GCGGCGGCAGCGGTACCACCACCAGCTGCTGAGCAATGCCGCAAGATCAG
GGTACCAAGAGGTGGGCCGCACACTTGCAGTGGTATACAGCTTGGTCTCT
AGGTCTAGGTAGACCCAGGTCACCGTTCACAAACTGTGCCACATCTTTTC
CGGACAGCTGCTATTTTACATACCGAACCACCGCGCTGCACGTCTCCCTC
TCCTAGCGGCGTCGTTCCGTGAGAACACTTGCGGCCCATGCGACCCTCCT
ACCTACAAGTGTCGCCGTTGTGTGCTAGTATGACCTACATTTGGGCTCTC
AACGGTGGTCGTCTACTGGTTGTCTTTTCGTAGGTAGAGGCGAGCACATC
ACGTCCAGCACAACGCCGCACAACACCAGCCCGCTACGAAACCCGCGGGT
ATCGTTTAATTTTAAACGATACCCACGGGATCGATTTCCACATTTCCCGG
CATTTACTTTACTGCACCAAGTGTAACCCACCGTTGTGTGTCTACTGGTT
GTGCTTGTGTTCGGGTTTGGGCTTGCGGTAGGGGCGAGGACAACACCAGC
ACGCTGCCGCCCACACCCAGCGGCAGCGCTGTAATGCCAGGCCCACAGGC
CGCGGAACTACT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5739:346..2007+

>mRNA_L-elsbetiae_contig5739.14133.1 ID=mRNA_L-elsbetiae_contig5739.14133.1|Name=mRNA_L-elsbetiae_contig5739.14133.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=960bp|location=Sequence derived from alignment at L-elsbetiae_contig5739:346..2007+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACTTATTTGCGAGCCCAGATAGCCCATTTGAGTTGGACCCGCGGGT
ACATGCAAATGCCCTGGTGTCTGGGGAGCTGTGCCTGAAGCCCCCTGCTC
AATCGCGGTTCTGTGTCCGGAGAACTCTGCTGTGTTCGGGATCGCATTTG
CCCCTTGGTGAAGTGTTGCAAATTGGCAGCTCTGTTCTACCAACTGTGAT
CTGTGATTCTGCTCTCTACTCTCGTCCGACGCGACGGCCGGGCTTCCTGA
AGGCGTCGCCCGTCTCCTCACACCCTGTGGAGAAGATCGAGGCACTTAAA
CCTCGTTTAGAGGGCTGCCGCGTGAGCGGTGTTCGGCGCCGGAGGCCCCT
GCCTACTGGGAGCGAGGCGGGTTGCGCAGCTCTAGCGCGGCTCAACAGCA
GCCTGCTGCCGACGGCTGCCGGAACTTTGGAAAGAGCCACTTTCGAGCAA
CTCCAGCGGTCGACGCCGATGCTCCACTGAATGAACTTATTTGCGAGCCC
AGATAGCCCATTTGAGTTGGACCCGCGGGTACATGCAAATGCCCTGGTGT
CTGGGGAGCTGTGCCTGAAGCCCCCTGCTCAATCGCGGTTCTGTGTCCGG
AGAACTCTGCTGTGTTCGGGATCGCATTTGCCCCTTGGTGAAGTGTTGCA
AATTGGCAGCTCTGTTCTACCAACTGTGATCTGTGATTCTGCTCTCTACT
CTCGTCCGACGCGACGGCCGGGCTTCCTGAAGGCGTCGCCCGTCTCCTCA
CACCCTGTGGAGAAGATCGAGGCACTTAAACCTCGTTTAGAGGGCTGCCG
CGTGAGCGGTGTTCGGCGCCGGAGGCCCCTGCCTACTGGGAGCGAGGCGG
GTTGCGCAGCTCTAGCGCGGCTCAACAGCAGCCTGCTGCCGACGGCTGCC
GGAACTTTGGAAAGAGCCACTTTCGAGCAACTCCAGCGGTCGACGCCGAT
GCTCCACTGA
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