mRNA_L-elsbetiae_contig5736.14130.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5736.14130.1
Unique NamemRNA_L-elsbetiae_contig5736.14130.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5736.14130.1 vs. uniprot
Match: D7FWW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW0_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.550e-16
Identity = 115/278 (41.37%), Postives = 137/278 (49.28%), Query Frame = 1
Query:   16 QHPQSQAPLDSNTHSHQRSISRSYMSN-EGEGVPMMPGGAQSSLVSTAIVAADAAGMMGXXXXXXXXXXXXXXXXXXXXXXGKTIEASAEGMAVEE---DNDGHSSAFALLLFAACRPRVRSSCTSLPPFLRPPLFSATAFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHDAGEGADEYEQRKRALAALEVP--AEEEEGGDGDVSYYEVSRA--EEAVDNFASTTTPMP----------AEGLDVHDDVARSPRSASSEGWVDQYTNSSI 795
            QHPQSQAPLDSN     +SI RS +++ EGE VPM+PGGAQSSLVSTAIVAADA  + G           XXXXXXXXX  GKT++ASAEG A E    D D  S   +     + R R R            P   A  +A                      XXXXXXXXXXX                    +++P  A   +G DGD+S+Y+ +    EE VDNFA   TP P            G D      R+ RS SSEGWVDQYT+SS+
Sbjct:   12 QHPQSQAPLDSN--GPPQSIYRSSVASAEGERVPMLPGGAQSSLVSTAIVAADAMRVRGTPGGEEDDDGSXXXXXXXXXSAGKTMDASAEGAAAEGGFGDGDMVSGGVSDRSGRSTRQRSRDQGDHASDIH--PGEGADEYAIRRSGSGNRPTRFSNGMANGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDIPELATPRDGEDGDMSFYDGNSRLEEEVVDNFADIPTPAPRGAGGRGSGAVAGADGR--TFRTQRSNSSEGWVDQYTSSSL 283          
BLAST of mRNA_L-elsbetiae_contig5736.14130.1 vs. uniprot
Match: A0A6H5JJI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI5_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 5.000e-13
Identity = 128/278 (46.04%), Postives = 153/278 (55.04%), Query Frame = 1
Query:   16 QHPQSQAPLDSNTHSHQRSISRSYMSN-EGEGVPMMPGGAQSSLVSTAIVAADAAGMMGXXXXXXXXXXXXXXXXXXXXXX-GKTIEASAEGMAVEEDNDGHSSAFALLLFAACRPRVRSS------CTSLPPFLRPPLFSATAFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHDAGEGADEYEQRKRALAALEVPAEEEEGGDGDVSYYEV-SRAEEAV-DNFASTTTPMP-AEGLDVHDDVA-------RSPRSASSEGWVDQYTNSSI 795
            QHPQSQAPLDSN    Q+SI RS +++ EGE VPM+PGGAQSSLVSTAIVAADA  +         XXXXXXXXXXXXXX  GKT++ASAEG A E D  G     + L   + R  ++ S       + + P      ++                      XXXXXXXXXXXXXXXX   A  G  E +     LA         +G DGD+S+Y+  SR EE V DNFA   TP P   G    + VA       R+ RS SSEGWVDQYT+SS+
Sbjct:  994 QHPQSQAPLDSN--GPQQSIYRSSVASAEGERVPMLPGGAQSSLVSTAIVAADAMRVRETRVRGEEXXXXXXXXXXXXXXSAGKTMDASAEGAAAEGDF-GDGDMVSGLSDRSGRSTLQRSRDQGDQASDIHPGEGADEYAIRQSGSGNRPTRFSNGMANGTGXXXXXXXXXXXXXXXXXXXARGGGREEDIDMPELATPR------DGEDGDMSFYDGNSRLEEEVLDNFADIPTPAPRGAGARGSEAVAGADGRTFRTQRSNSSEGWVDQYTSSSL 1262          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5736.14130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWW0_ECTSI2.550e-1641.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJI5_9PHAE5.000e-1346.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5736contigL-elsbetiae_contig5736:4582..6517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size795
Cds size795
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816613.1601055-CDS-L-elsbetiae_contig5736:4581..50651622816613.1601055-CDS-L-elsbetiae_contig5736:4581..5065Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5736 4582..5065 -
1691683685.0321336-CDS-L-elsbetiae_contig5736:4581..50651691683685.0321336-CDS-L-elsbetiae_contig5736:4581..5065Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5736 4582..5065 -
1622816613.1788526-CDS-L-elsbetiae_contig5736:6206..65171622816613.1788526-CDS-L-elsbetiae_contig5736:6206..6517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5736 6207..6517 -
1691683685.0413592-CDS-L-elsbetiae_contig5736:6206..65171691683685.0413592-CDS-L-elsbetiae_contig5736:6206..6517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5736 6207..6517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5736.14130.1prot_L-elsbetiae_contig5736.14130.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5736 4582..6517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5736.14130.1

>prot_L-elsbetiae_contig5736.14130.1 ID=prot_L-elsbetiae_contig5736.14130.1|Name=mRNA_L-elsbetiae_contig5736.14130.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=265bp
MRPSQQHPQSQAPLDSNTHSHQRSISRSYMSNEGEGVPMMPGGAQSSLVS
TAIVAADAAGMMGAGARGVGDTGSGGVGGGGGSSGGKTIEASAEGMAVEE
DNDGHSSAFALLLFAACRPRVRSSCTSLPPFLRPPLFSATAFATATASAA
AAAAAAAAAAAAATAATASAAASLPVEHDAGEGADEYEQRKRALAALEVP
AEEEEGGDGDVSYYEVSRAEEAVDNFASTTTPMPAEGLDVHDDVARSPRS
ASSEGWVDQYTNSSI
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mRNA from alignment at L-elsbetiae_contig5736:4582..6517-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5736.14130.1 ID=mRNA_L-elsbetiae_contig5736.14130.1|Name=mRNA_L-elsbetiae_contig5736.14130.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1936bp|location=Sequence derived from alignment at L-elsbetiae_contig5736:4582..6517- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCCCTTCGCAGCAACATCCGCAATCCCAGGCCCCCCTGGACAGCAA TACCCATAGCCACCAGCGGAGCATATCACGGAGCTACATGTCCAACGAGG GGGAGGGCGTGCCGATGATGCCGGGGGGGGCTCAGTCCTCCCTCGTGTCG ACGGCCATCGTCGCCGCCGACGCGGCCGGGATGATGGGGGCCGGGGCAAG GGGGGTCGGGGACACCGGGAGCGGGGGCGTGGGCGGCGGCGGGGGAAGCT CCGGCGGCAAGACCATCGAGGCGTCTGCGGAAGGAATGGCGGTGGAGGAG GACAACGACGGGTAGGTTCGTGGGTGCGCGGGGTAGGTATGCAGAGGGGG GACTCGTGTCTTGTGTTTTCGGGGGCTTACAAAAATGTCACTCCTTCTGT GTGTTGTGTGAGTAAAATGTAGAGGCGTAAAATATGCTTTCTTGGGTTTT AAGTGCGGTGGTTGGATGAGTCAGCCCGCTGCTGCTGCTGCTGTTGCTGC TGCTTCTGCTGCCTTTGGTGTGCTTTTTCCGATGGTGTACGCAGGGTTTC AGTCAGCTAAACATATGGGATAAATTTTGGAATCGGAGGAATGGGGGGGG GGGTTGTGGTTAGGTTTAGGGTTACGGAACCCCCTCACTCTATTTGACAT GTGTATGAACCTGAATTTGACGATTTTCTGCGCGTAGGCGGTCCGATTTT TCCTCCGACCTTTTCTTTTTTTGGTGGCAAAGGTTGCTTATATATGGCGG TGGCGGGGGTGCGTGGATGCACATCGAGGAGGTATGTGGTTCGGATTTTG GTGCAGTGAAACCGAGCTCGAACTACAAAAGCCACCTGTGATCCGAGCTG TAAGCTGCTTCGGGGCTGGGGGTTGTTGGTTTGCCGGAGGTGGAGTGTGC TCTCATCGCCCTGACGGAGAGGGGGCTAAAACAAAAAAAAATGTTGGGAC GAAGTGCGTTTTACGGCTTTGCCAAGCGCGGCGTTTTTTTTTTTCCTTCT ACCCCCTCTAACAAAAAAAAAATGTTGGGACGAAGTGCGTTTTACGGCTC CGCCAAGCGCGGCGTTTTTTTTTTCCTTCTACACGGACAGATATCGGGAT ATAAGACAGAGGGCGCGGGTTATACGTACGGGTGTGCGTGTGTAACCCGC CGTTTGTTGTTCGCCATTTACATTGATTGTATACTACAGGCGTGTTTGTT GATCGCAAAATCACGTTCGTTCGTAAAAGTATGGGAGCCCGCCGTTCGGG TCACTTTTTTTTTTCTGGGTTCCTGTGCGTCTTGTGTCTCCTTCCCCTTG TGGCGACGCTGGGTCGAATATCGCCGGAAGTGGGACGTCCGACGTCGGTC TCCAGCTTTCCCTTTGCCCTTTGTTTTTGAACCACACCATCAGCCCCATG GTTGGTATGTATTGTCGTATTGATTACATGCACTTGCTTCGAGTTAAGTG AGTCACTCATCGGCTTTCGCCCTTTTGCTCTTTGCTGCCTGTCGTCCGCG CGTCCGTTCCTCTTGCACCTCCCTCCCCCCCTTCCTCCGCCCACCACTCT TTTCTGCTACTGCTTTTGCTACTGCTACTGCTTCTGCTGCTGCTGCTGCT GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTGCTACTGCTTCTGC TGCTGCTAGCCTGCCGGTCGAGCACGACGCCGGGGAGGGGGCCGACGAGT ACGAGCAGCGCAAGCGGGCCCTGGCGGCATTAGAGGTACCGGCGGAGGAA GAAGAGGGGGGAGACGGGGACGTCTCCTACTACGAGGTCTCGCGGGCGGA GGAGGCGGTCGACAACTTTGCGAGCACGACCACGCCCATGCCGGCGGAGG GTTTGGACGTCCATGATGATGTGGCCCGCAGCCCCAGGAGCGCCAGCTCC GAGGGCTGGGTGGACCAGTACACGAATAGCTCGATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5736:4582..6517-

>mRNA_L-elsbetiae_contig5736.14130.1 ID=mRNA_L-elsbetiae_contig5736.14130.1|Name=mRNA_L-elsbetiae_contig5736.14130.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1590bp|location=Sequence derived from alignment at L-elsbetiae_contig5736:4582..6517- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCCCTTCGCAGCAACATCCGCAATCCCAGGCCCCCCTGGACAGCAA
TACCCATAGCCACCAGCGGAGCATATCACGGAGCTACATGTCCAACGAGG
GGGAGGGCGTGCCGATGATGCCGGGGGGGGCTCAGTCCTCCCTCGTGTCG
ACGGCCATCGTCGCCGCCGACGCGGCCGGGATGATGGGGGCCGGGGCAAG
GGGGGTCGGGGACACCGGGAGCGGGGGCGTGGGCGGCGGCGGGGGAAGCT
CCGGCGGCAAGACCATCGAGGCGTCTGCGGAAGGAATGGCGGTGGAGGAG
GACAACGACGGATGCGCCCTTCGCAGCAACATCCGCAATCCCAGGCCCCC
CTGGACAGCAATACCCATAGCCACCAGCGGAGCATATCACGGAGCTACAT
GTCCAACGAGGGGGAGGGCGTGCCGATGATGCCGGGGGGGGCTCAGTCCT
CCCTCGTGTCGACGGCCATCGTCGCCGCCGACGCGGCCGGGATGATGGGG
GCCGGGGCAAGGGGGGTCGGGGACACCGGGAGCGGGGGCGTGGGCGGCGG
CGGGGGAAGCTCCGGCGGCAAGACCATCGAGGCGTCTGCGGAAGGAATGG
CGGTGGAGGAGGACAACGACGGTCACTCATCGGCTTTCGCCCTTTTGCTC
TTTGCTGCCTGTCGTCCGCGCGTCCGTTCCTCTTGCACCTCCCTCCCCCC
CTTCCTCCGCCCACCACTCTTTTCTGCTACTGCTTTTGCTACTGCTACTG
CTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
ACTGCTGCTACTGCTTCTGCTGCTGCTAGCCTGCCGGTCGAGCACGACGC
CGGGGAGGGGGCCGACGAGTACGAGCAGCGCAAGCGGGCCCTGGCGGCAT
TAGAGGTACCGGCGGAGGAAGAAGAGGGGGGAGACGGGGACGTCTCCTAC
TACGAGGTCTCGCGGGCGGAGGAGGCGGTCGACAACTTTGCGAGCACGAC
CACGCCCATGCCGGCGGAGGGTTTGGACGTCCATGATGATGTGGCCCGCA
GCCCCAGGAGCGCCAGCTCCGAGGGCTGGGTGGACCAGTACACGAATAGC
TCGATCTCACTCATCGGCTTTCGCCCTTTTGCTCTTTGCTGCCTGTCGTC
CGCGCGTCCGTTCCTCTTGCACCTCCCTCCCCCCCTTCCTCCGCCCACCA
CTCTTTTCTGCTACTGCTTTTGCTACTGCTACTGCTTCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTGCTACTGCTT
CTGCTGCTGCTAGCCTGCCGGTCGAGCACGACGCCGGGGAGGGGGCCGAC
GAGTACGAGCAGCGCAAGCGGGCCCTGGCGGCATTAGAGGTACCGGCGGA
GGAAGAAGAGGGGGGAGACGGGGACGTCTCCTACTACGAGGTCTCGCGGG
CGGAGGAGGCGGTCGACAACTTTGCGAGCACGACCACGCCCATGCCGGCG
GAGGGTTTGGACGTCCATGATGATGTGGCCCGCAGCCCCAGGAGCGCCAG
CTCCGAGGGCTGGGTGGACCAGTACACGAATAGCTCGATC
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