mRNA_L-elsbetiae_contig5736.14129.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5736.14129.1
Unique NamemRNA_L-elsbetiae_contig5736.14129.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5736.14129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5736contigL-elsbetiae_contig5736:557..1173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size617
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5736.14129.1prot_L-elsbetiae_contig5736.14129.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5736 798..1142 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816613.2208025-UTR-L-elsbetiae_contig5736:556..7971622816613.2208025-UTR-L-elsbetiae_contig5736:556..797Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5736 557..797 +
1691683685.0534031-UTR-L-elsbetiae_contig5736:556..7971691683685.0534031-UTR-L-elsbetiae_contig5736:556..797Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5736 557..797 +
1622816613.2518942-UTR-L-elsbetiae_contig5736:1142..11731622816613.2518942-UTR-L-elsbetiae_contig5736:1142..1173Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5736 1143..1173 +
1691683685.0795105-UTR-L-elsbetiae_contig5736:1142..11731691683685.0795105-UTR-L-elsbetiae_contig5736:1142..1173Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5736 1143..1173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816613.2355447-CDS-L-elsbetiae_contig5736:797..11421622816613.2355447-CDS-L-elsbetiae_contig5736:797..1142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5736 798..1142 +
1691683685.0677094-CDS-L-elsbetiae_contig5736:797..11421691683685.0677094-CDS-L-elsbetiae_contig5736:797..1142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5736 798..1142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5736.14129.1

>prot_L-elsbetiae_contig5736.14129.1 ID=prot_L-elsbetiae_contig5736.14129.1|Name=mRNA_L-elsbetiae_contig5736.14129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MSVFFPRKACPAAGKRWNTIPIFRIYLTPKKLMINLHVRIAHRGMLSLGP
TTPPPHHLSQYCLPTQRQSDKGAYFTHSDLLVTPRLRPKIQRKSNTSQIP
DLLLSTWSCSPIPE*
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mRNA from alignment at L-elsbetiae_contig5736:557..1173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5736.14129.1 ID=mRNA_L-elsbetiae_contig5736.14129.1|Name=mRNA_L-elsbetiae_contig5736.14129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=617bp|location=Sequence derived from alignment at L-elsbetiae_contig5736:557..1173+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGGTCTCTCTTAGATTTTGTTATTTCTTCTCAGAAAAAATGGTCCGGA
TCTTTTCGCCACATACATAGACTACTACTATCGGTGCGAAACCGTCTCCC
TCAACGGTGCCCCCCACCGCCGGAGAAGAAGAGGAGAAGGACAAAAACCG
CGAGCTCATATTTGGTATAATGTTGCCGCTAAAACTTGACTGAAAAAAAA
AATGGTACATACGCCGCGTGCCGTACACACAAAACAGATGCATGAGCGTC
TTTTTCCCGCGCAAGGCGTGTCCCGCTGCTGGGAAAAGATGGAACACTAT
CCCCATCTTTCGTATCTATTTAACCCCCAAGAAGTTAATGATAAACCTAC
ACGTAAGAATAGCACACAGGGGCATGCTCTCTTTAGGCCCTACCACCCCA
CCACCCCACCATCTCTCCCAATACTGCCTGCCTACGCAACGACAATCCGA
TAAGGGAGCGTACTTCACGCACAGTGACCTACTAGTAACGCCCAGGCTGC
GCCCCAAAATTCAGCGCAAGTCCAACACAAGCCAAATACCAGATCTCCTC
CTGTCAACTTGGAGTTGCTCGCCGATACCAGAATAATAAACACGCAAGGA
GCAAGGTACGAGAGACT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5736:557..1173+

>mRNA_L-elsbetiae_contig5736.14129.1 ID=mRNA_L-elsbetiae_contig5736.14129.1|Name=mRNA_L-elsbetiae_contig5736.14129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig5736:557..1173+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCGTCTTTTTCCCGCGCAAGGCGTGTCCCGCTGCTGGGAAAAGATG
GAACACTATCCCCATCTTTCGTATCTATTTAACCCCCAAGAAGTTAATGA
TAAACCTACACGTAAGAATAGCACACAGGGGCATGCTCTCTTTAGGCCCT
ACCACCCCACCACCCCACCATCTCTCCCAATACTGCCTGCCTACGCAACG
ACAATCCGATAAGGGAGCGTACTTCACGCACAGTGACCTACTAGTAACGC
CCAGGCTGCGCCCCAAAATTCAGCGCAAGTCCAACACAAGCCAAATACCA
GATCTCCTCCTGTCAACTTGGAGTTGCTCGCCGATACCAGAATAAATGAG
CGTCTTTTTCCCGCGCAAGGCGTGTCCCGCTGCTGGGAAAAGATGGAACA
CTATCCCCATCTTTCGTATCTATTTAACCCCCAAGAAGTTAATGATAAAC
CTACACGTAAGAATAGCACACAGGGGCATGCTCTCTTTAGGCCCTACCAC
CCCACCACCCCACCATCTCTCCCAATACTGCCTGCCTACGCAACGACAAT
CCGATAAGGGAGCGTACTTCACGCACAGTGACCTACTAGTAACGCCCAGG
CTGCGCCCCAAAATTCAGCGCAAGTCCAACACAAGCCAAATACCAGATCT
CCTCCTGTCAACTTGGAGTTGCTCGCCGATACCAGAATAA
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