mRNA_L-elsbetiae_contig573.14123.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig573.14123.1
Unique NamemRNA_L-elsbetiae_contig573.14123.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig573.14123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig573contigL-elsbetiae_contig573:30304..30723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size267
Cds size159
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig573.14123.1prot_L-elsbetiae_contig573.14123.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig573 30342..30653 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816612.5261562-UTR-L-elsbetiae_contig573:30303..303411622816612.5261562-UTR-L-elsbetiae_contig573:30303..30341Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig573 30304..30341 +
1691683684.6018324-UTR-L-elsbetiae_contig573:30303..303411691683684.6018324-UTR-L-elsbetiae_contig573:30303..30341Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig573 30304..30341 +
1622816612.5643384-UTR-L-elsbetiae_contig573:30653..307231622816612.5643384-UTR-L-elsbetiae_contig573:30653..30723Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig573 30654..30723 +
1691683684.6337378-UTR-L-elsbetiae_contig573:30653..307231691683684.6337378-UTR-L-elsbetiae_contig573:30653..30723Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig573 30654..30723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816612.5392275-CDS-L-elsbetiae_contig573:30341..304891622816612.5392275-CDS-L-elsbetiae_contig573:30341..30489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig573 30342..30489 +
1691683684.6138685-CDS-L-elsbetiae_contig573:30341..304891691683684.6138685-CDS-L-elsbetiae_contig573:30341..30489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig573 30342..30489 +
1622816612.5517826-CDS-L-elsbetiae_contig573:30642..306531622816612.5517826-CDS-L-elsbetiae_contig573:30642..30653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig573 30643..30653 +
1691683684.6245608-CDS-L-elsbetiae_contig573:30642..306531691683684.6245608-CDS-L-elsbetiae_contig573:30642..30653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig573 30643..30653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig573.14123.1

>prot_L-elsbetiae_contig573.14123.1 ID=prot_L-elsbetiae_contig573.14123.1|Name=mRNA_L-elsbetiae_contig573.14123.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=53bp
MYFVEVSSAYLPSAPPVCSDPEPFSLAIRRRWSSCRPSSRASLSVLQLPG
LT*
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mRNA from alignment at L-elsbetiae_contig573:30304..30723+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig573.14123.1 ID=mRNA_L-elsbetiae_contig573.14123.1|Name=mRNA_L-elsbetiae_contig573.14123.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig573:30304..30723+ (Laminarionema elsbetiae ELsaHSoW15)
AAGCATCAAAGCCTAAGGCAAGTTCCTTTGGCGTTGGAATGTATTTTGTC
GAAGTGAGTTCTGCTTACCTCCCGAGTGCACCTCCGGTCTGTTCAGACCC
AGAACCATTCTCGCTTGCAATACGTCGCCGGTGGAGCTCCTGTCGGCCTT
CTTCCCGGGCCTCGCTCTCGGTGCTGCAGTTGCCAGGTACGCAAACGGAG
TGTCGTTGTCACGTGCAAGAGACGTTTCCAGAGGGTGAGGTACGAGGCAA
ACGACGCATGCATCATTCGTAGCAGAACGTGGGAGATGTTTGTCCGCCTT
CATTTCTCGGGTGTTGTCTATTCCGCCTTTTTCTCGCAGGTTTGACATGA
CCACACGCGTGACCTGCTATTGCGATTTCGGAATTCCATTCCCGTGCGTG
GTAGCCAGTTCGGGGGACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig573:30304..30723+

>mRNA_L-elsbetiae_contig573.14123.1 ID=mRNA_L-elsbetiae_contig573.14123.1|Name=mRNA_L-elsbetiae_contig573.14123.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig573:30304..30723+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATTTTGTCGAAGTGAGTTCTGCTTACCTCCCGAGTGCACCTCCGGT
CTGTTCAGACCCAGAACCATTCTCGCTTGCAATACGTCGCCGGTGGAGCT
CCTGTCGGCCTTCTTCCCGGGCCTCGCTCTCGGTGCTGCAGTTGCCAGAT
GTATTTTGTCGAAGTGAGTTCTGCTTACCTCCCGAGTGCACCTCCGGTCT
GTTCAGACCCAGAACCATTCTCGCTTGCAATACGTCGCCGGTGGAGCTCC
TGTCGGCCTTCTTCCCGGGCCTCGCTCTCGGTGCTGCAGTTGCCAGGTTT
GACATGAGTTTGACATGA
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