mRNA_L-elsbetiae_contig5723.14116.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5723.14116.1
Unique NamemRNA_L-elsbetiae_contig5723.14116.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5723.14116.1 vs. uniprot
Match: D7G316_ECTSI (Inversin protein alternative isoform n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G316_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.550e-19
Identity = 53/84 (63.10%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:  604 LHFAAFRHNVAHVSLLLRWGADENTLEKNDKTPADFNDKLEPRSQAERDRVERVRLLLARAPADRAWRRRGWLVMLRSRTLKAG 855
            LH AA  ++V HVSLLL+WGADE  L+++ KTPAD  D+  P+ +A       VRLLLARAPADRAWRRRGWLVM+ SRT KAG
Sbjct:  576 LHVAASLNSVEHVSLLLQWGADETALDRDGKTPADLIDESRPQHEA-------VRLLLARAPADRAWRRRGWLVMVFSRTPKAG 652
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BLAST of mRNA_L-elsbetiae_contig5723.14116.1 vs. uniprot
Match: D8LNI8_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 4.880e-16
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:  592 GCTALHFAAF-RHN--VAHVSLLLRWGADENTLEKNDKTPADF----NDKLEPRSQAERDRVERVRLLLARAPADRAWRRRGWLVMLRSRTLKA 852
            G T LH   + RH    A V +LLRWGADE TL     +PADF      K+   + A +D ++R RLLL+RAPADRAWRRRGWLVMLRSR  KA
Sbjct:   18 GYTPLHETCWERHEGLEAAVDMLLRWGADETTLNYGGASPADFLGGRYGKVIGHNPAPQDEIDRTRLLLSRAPADRAWRRRGWLVMLRSRDSKA 111
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BLAST of mRNA_L-elsbetiae_contig5723.14116.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.840e-14
Identity = 53/95 (55.79%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:  592 GCTALHFAAFRHNV---AHVSLLLRWGADENTLEKNDKTPA---DFNDKLEPRSQAERDRVERVRLLLARAPADRAWRRRGWLVMLRS--RTLKA 852
            G T LH A +R +    A V LLLRWGADE  L    KTPA   D +D    R+      + RVR+LLARAPADRAWRRR WLVMLRS  RT KA
Sbjct:  339 GNTPLHVACYRQHKGLEAPVDLLLRWGADETALNNAGKTPAGLLDEHDNENDRTTCSEAEINRVRMLLARAPADRAWRRRCWLVMLRSFARTAKA 433
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BLAST of mRNA_L-elsbetiae_contig5723.14116.1 vs. uniprot
Match: A0A6H5JRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY1_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.950e-14
Identity = 48/88 (54.55%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:  592 GCTALHFAAF---RHNVAHVSLLLRWGADENTLEKNDKTPADF---NDKLEPRSQAERDRVERVRLLLARAPADRAWRRRGWLVMLRS 837
            G T LH+A +   R   A V LLLRWGADE  L+ + KTPAD    +D    R+      +E+VRLL+ARAPA+RAWRRR WLVMLRS
Sbjct:  257 GGTPLHWACYWQVRGVEATVDLLLRWGADETALDNDSKTPADLLDEDDNENDRTTCSEAEIEQVRLLMARAPANRAWRRRCWLVMLRS 344
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BLAST of mRNA_L-elsbetiae_contig5723.14116.1 vs. uniprot
Match: A0A6H5JWW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW4_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.940e-13
Identity = 52/95 (54.74%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:  592 GCTALHFAAFRHNV---AHVSLLLRWGADENTLEKNDKTPADF---NDKLEPRSQAERDRVERVRLLLARAPADRAWRRRGWLVMLRS--RTLKA 852
            G T LH A +R +    A V LLLRWGADE  L  + KTPAD    +D    R+      +ERVRLLLARAPAD+A RRR WLVMLRS  RT +A
Sbjct:  553 GNTPLHLACYRQDSGLEAPVDLLLRWGADETALNNDGKTPADLLDEHDNENDRTTCSEAEIERVRLLLARAPADQARRRRCWLVMLRSFARTTRA 647
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BLAST of mRNA_L-elsbetiae_contig5723.14116.1 vs. uniprot
Match: D8LP48_ECTSI (EsV-1-8 n=2 Tax=root TaxID=1 RepID=D8LP48_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.010e-12
Identity = 47/90 (52.22%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:  592 GCTALHFAAFRHNVAH--VSLLLRWGADENTLEKNDKTPADFNDKLEPRSQAERDRVERVRLLLARAPADRAWRRRGWLVMLRSRTLKAG 855
            G T LH    R +     V LLLRWGADE   ++  KTPAD+  ++     A     ERVR LL  AP DRAWRRRGWLVMLR+ TL AG
Sbjct:  345 GQTPLHHIMNRGSCVPSVVDLLLRWGADETMKDERGKTPADYLGRIRNLDPAV---AERVRHLLVNAPKDRAWRRRGWLVMLRAHTLAAG 431
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BLAST of mRNA_L-elsbetiae_contig5723.14116.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.920e-12
Identity = 48/90 (53.33%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:  592 GCTALHFAAFRHNV---AHVSLLLRWGADENTLEKNDKTPADF-----NDKLEPRSQAERDRVERVRLLLARAPADRAWRRRGWLVMLRS 837
            G T LH A +R ++   A V LLL+WGADE  +  +  TPAD+     N+     S AE   + RVRLLLARAPA+RAWRRR WLVMLRS
Sbjct:  280 GTTPLHRACYRQDIGVEATVDLLLQWGADETAVHNDGNTPADWLVENNNENGTTCSTAE---IGRVRLLLARAPANRAWRRRCWLVMLRS 366
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BLAST of mRNA_L-elsbetiae_contig5723.14116.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.030e-11
Identity = 46/96 (47.92%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:  589 SGCTALHFAAFRHN---VAHVSLLLRWGADENTLEKNDKTPADF-------NDKLEPRSQAERDRVERVRLLLARAPADRAWRRRGWLVMLRSRTL 846
            +G T LH A         A + LLLRWGADE    K  +TP D        N    P      D V+R RLLL RAP DR WRRRGWLV+LRSRT+
Sbjct:  341 TGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTDNPHCSP------DEVDRARLLLVRAPTDRRWRRRGWLVVLRSRTI 430
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BLAST of mRNA_L-elsbetiae_contig5723.14116.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.410e-11
Identity = 44/89 (49.44%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:  592 GCTALHFAAFRHNVA---HVSLLLRWGADENTLEKNDKTPADFNDKLEPRSQAERDRVERVRLLLARAPADRAWRRRGWLVMLRSRTLK 849
            G TALH A           V  LLRWGA E  +++ND+TP D   ++      E   ++R   LLARAPADRAWRRRGWLVML  RT K
Sbjct:  341 GSTALHLAGHARGYKVDDTVDTLLRWGASEQAVDENDETPVDRLTEVAREVVWEWPELDRALELLARAPADRAWRRRGWLVMLHERTKK 429
[Close]
BLAST of mRNA_L-elsbetiae_contig5723.14116.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.910e-11
Identity = 42/83 (50.60%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:  598 TALHFAAFRHNVAHVSLLLRWGADENTLEKNDKTPADF---NDKLEPRSQAERDRVERVRLLLARAPADRAWRRRGWLVMLRS 837
            T LH A    NVA V LLLRWGADE     N   PAD     D+ +   +  +   +R+R +LARAPADR+WRRRGWLV+ RS
Sbjct:  353 TPLHVACMHSNVAAVELLLRWGADETCSNDNGDVPADVIGVYDRGDVNDEDVKADHKRIRRMLARAPADRSWRRRGWLVLSRS 435
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5723.14116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G316_ECTSI2.550e-1963.10Inversin protein alternative isoform n=1 Tax=Ectoc... [more]
D8LNI8_ECTSI4.880e-1655.32EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LS36_ECTSI1.840e-1455.79Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JRY1_9PHAE3.950e-1454.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW4_9PHAE1.940e-1354.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP48_ECTSI3.010e-1252.22EsV-1-8 n=2 Tax=root TaxID=1 RepID=D8LP48_ECTSI[more]
D8LRZ8_ECTSI3.920e-1253.33Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FLL7_ECTSI1.030e-1147.92Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5K513_9PHAE1.410e-1149.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB27_ECTSI1.910e-1150.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5723contigL-elsbetiae_contig5723:343..1197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue3.8e-18
Seed eggNOG ortholog2880.D7G316
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size855
Cds size855
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816612.1411643-CDS-L-elsbetiae_contig5723:342..11971622816612.1411643-CDS-L-elsbetiae_contig5723:342..1197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5723 343..1197 +
1691683684.3343306-CDS-L-elsbetiae_contig5723:342..11971691683684.3343306-CDS-L-elsbetiae_contig5723:342..1197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5723 343..1197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5723.14116.1prot_L-elsbetiae_contig5723.14116.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5723 343..1197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5723.14116.1

>prot_L-elsbetiae_contig5723.14116.1 ID=prot_L-elsbetiae_contig5723.14116.1|Name=mRNA_L-elsbetiae_contig5723.14116.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=285bp
PLCAAAENGNTGLVVVLLDKLGADINFKDTLGETPLMKASDGGHLPVVET
LLAAGADVDLTNRHRFTALHVAAGAGYAEIVDVLLKKGAETDARAIAGGT
PLMQAAYRDRLSVVKTLLAAKAGVNVTDAQGTTALYLAARDGQKEVMLAL
LHGGADTNLGSTTPLMAAADKDDCSIVETLLAAGADVNIRSTSGWRSGCT
ALHFAAFRHNVAHVSLLLRWGADENTLEKNDKTPADFNDKLEPRSQAERD
RVERVRLLLARAPADRAWRRRGWLVMLRSRTLKAG
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mRNA from alignment at L-elsbetiae_contig5723:343..1197+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5723.14116.1 ID=mRNA_L-elsbetiae_contig5723.14116.1|Name=mRNA_L-elsbetiae_contig5723.14116.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=855bp|location=Sequence derived from alignment at L-elsbetiae_contig5723:343..1197+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCTCTGTGCTGCCGCGGAAAATGGGAACACGGGGCTAGTGGTGGTTCT
CTTGGACAAGCTTGGAGCTGACATAAACTTTAAAGACACTCTCGGCGAGA
CACCCCTGATGAAAGCATCTGACGGAGGCCACCTACCCGTCGTGGAAACG
TTACTGGCCGCTGGTGCAGACGTCGACCTCACCAACCGACACAGATTTAC
CGCTCTCCACGTAGCCGCGGGCGCTGGGTATGCTGAGATAGTGGATGTCT
TACTGAAGAAGGGTGCGGAAACGGATGCGCGCGCCATTGCTGGTGGAACC
CCGCTGATGCAGGCAGCCTACCGTGACCGACTGTCTGTCGTGAAGACACT
GTTGGCTGCGAAGGCCGGTGTAAACGTCACTGATGCCCAAGGGACCACTG
CTCTATACCTAGCTGCCCGGGATGGGCAGAAGGAGGTCATGCTTGCTCTC
CTGCACGGGGGAGCTGACACGAATCTGGGGTCCACAACACCTCTAATGGC
AGCCGCCGACAAGGACGATTGTTCTATCGTGGAGACTCTACTGGCGGCCG
GTGCCGACGTCAACATCCGCTCTACGAGCGGATGGAGGAGCGGATGTACC
GCTCTACATTTTGCTGCCTTCCGCCACAATGTGGCTCACGTGAGTCTCCT
GTTGCGGTGGGGGGCGGACGAAAACACCTTGGAAAAAAACGACAAGACTC
CGGCGGATTTCAACGACAAGTTGGAGCCTCGCAGTCAGGCTGAGCGAGAC
AGAGTCGAGCGCGTCCGCCTCCTGCTGGCCCGGGCTCCCGCCGACAGGGC
GTGGCGCCGTCGGGGCTGGCTCGTCATGCTTCGTTCGCGCACCCTGAAGG
CCGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5723:343..1197+

>mRNA_L-elsbetiae_contig5723.14116.1 ID=mRNA_L-elsbetiae_contig5723.14116.1|Name=mRNA_L-elsbetiae_contig5723.14116.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1710bp|location=Sequence derived from alignment at L-elsbetiae_contig5723:343..1197+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCTCTGTGCTGCCGCGGAAAATGGGAACACGGGGCTAGTGGTGGTTCT
CTTGGACAAGCTTGGAGCTGACATAAACTTTAAAGACACTCTCGGCGAGA
CACCCCTGATGAAAGCATCTGACGGAGGCCACCTACCCGTCGTGGAAACG
TTACTGGCCGCTGGTGCAGACGTCGACCTCACCAACCGACACAGATTTAC
CGCTCTCCACGTAGCCGCGGGCGCTGGGTATGCTGAGATAGTGGATGTCT
TACTGAAGAAGGGTGCGGAAACGGATGCGCGCGCCATTGCTGGTGGAACC
CCGCTGATGCAGGCAGCCTACCGTGACCGACTGTCTGTCGTGAAGACACT
GTTGGCTGCGAAGGCCGGTGTAAACGTCACTGATGCCCAAGGGACCACTG
CTCTATACCTAGCTGCCCGGGATGGGCAGAAGGAGGTCATGCTTGCTCTC
CTGCACGGGGGAGCTGACACGAATCTGGGGTCCACAACACCTCTAATGGC
AGCCGCCGACAAGGACGATTGTTCTATCGTGGAGACTCTACTGGCGGCCG
GTGCCGACGTCAACATCCGCTCTACGAGCGGATGGAGGAGCGGATGTACC
GCTCTACATTTTGCTGCCTTCCGCCACAATGTGGCTCACGTGAGTCTCCT
GTTGCGGTGGGGGGCGGACGAAAACACCTTGGAAAAAAACGACAAGACTC
CGGCGGATTTCAACGACAAGTTGGAGCCTCGCAGTCAGGCTGAGCGAGAC
AGAGTCGAGCGCGTCCGCCTCCTGCTGGCCCGGGCTCCCGCCGACAGGGC
GTGGCGCCGTCGGGGCTGGCTCGTCATGCTTCGTTCGCGCACCCTGAAGG
CCGGTCCCCTCTGTGCTGCCGCGGAAAATGGGAACACGGGGCTAGTGGTG
GTTCTCTTGGACAAGCTTGGAGCTGACATAAACTTTAAAGACACTCTCGG
CGAGACACCCCTGATGAAAGCATCTGACGGAGGCCACCTACCCGTCGTGG
AAACGTTACTGGCCGCTGGTGCAGACGTCGACCTCACCAACCGACACAGA
TTTACCGCTCTCCACGTAGCCGCGGGCGCTGGGTATGCTGAGATAGTGGA
TGTCTTACTGAAGAAGGGTGCGGAAACGGATGCGCGCGCCATTGCTGGTG
GAACCCCGCTGATGCAGGCAGCCTACCGTGACCGACTGTCTGTCGTGAAG
ACACTGTTGGCTGCGAAGGCCGGTGTAAACGTCACTGATGCCCAAGGGAC
CACTGCTCTATACCTAGCTGCCCGGGATGGGCAGAAGGAGGTCATGCTTG
CTCTCCTGCACGGGGGAGCTGACACGAATCTGGGGTCCACAACACCTCTA
ATGGCAGCCGCCGACAAGGACGATTGTTCTATCGTGGAGACTCTACTGGC
GGCCGGTGCCGACGTCAACATCCGCTCTACGAGCGGATGGAGGAGCGGAT
GTACCGCTCTACATTTTGCTGCCTTCCGCCACAATGTGGCTCACGTGAGT
CTCCTGTTGCGGTGGGGGGCGGACGAAAACACCTTGGAAAAAAACGACAA
GACTCCGGCGGATTTCAACGACAAGTTGGAGCCTCGCAGTCAGGCTGAGC
GAGACAGAGTCGAGCGCGTCCGCCTCCTGCTGGCCCGGGCTCCCGCCGAC
AGGGCGTGGCGCCGTCGGGGCTGGCTCGTCATGCTTCGTTCGCGCACCCT
GAAGGCCGGT
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