mRNA_L-elsbetiae_contig5720.14112.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5720.14112.1
Unique NamemRNA_L-elsbetiae_contig5720.14112.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5720.14112.1 vs. uniprot
Match: A0A6H5K450_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K450_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.090e-16
Identity = 55/105 (52.38%), Postives = 63/105 (60.00%), Query Frame = 3 
Query:    9 QGILQDMDMERATLQEQLAAVRAENDMLRSRAMG-PRTGRTHSSSGASYNDSDKEXXXXXXXXXXXXXXXXXXXXXDAGSSEREASPLPTPRSFGRPKARGMSLS 320
            +GILQ+MDMERA LQEQL AV+ EN +LRSRAMG P T RT S SGA+    DKE                       G   RE SPLP PRSF RPKARG+S++
Sbjct:  568 EGILQEMDMERADLQEQLMAVKMENKILRSRAMGVPHTPRTRSFSGATSTTKDKELEQD-------------------GDLMRELSPLPVPRSFERPKARGISMA 653
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BLAST of mRNA_L-elsbetiae_contig5720.14112.1 vs. uniprot
Match: D8LKM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM4_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.720e-13
Identity = 51/99 (51.52%), Postives = 58/99 (58.59%), Query Frame = 3 
Query:   27 MDMERATLQEQLAAVRAENDMLRSRAMG-PRTGRTHSSSGASYNDSDKEXXXXXXXXXXXXXXXXXXXXXDAGSSEREASPLPTPRSFGRPKARGMSLS 320
            MDMERA LQEQL AV+ EN++LRSRA G PRT RT S SGA+    DKE                       G   RE SPLP PRSF RPKARG+S++
Sbjct:    1 MDMERADLQEQLMAVKMENNILRSRATGVPRTPRTRSFSGATLTTKDKELEQD-------------------GDLMRELSPLPVPRSFERPKARGISMA 80
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5720.14112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K450_9PHAE4.090e-1652.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKM4_ECTSI1.720e-1351.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5720contigL-elsbetiae_contig5720:1189..3168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size323
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816611.8690767-CDS-L-elsbetiae_contig5720:1188..12771622816611.8690767-CDS-L-elsbetiae_contig5720:1188..1277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5720 1189..1277 +
1691683684.1595452-CDS-L-elsbetiae_contig5720:1188..12771691683684.1595452-CDS-L-elsbetiae_contig5720:1188..1277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5720 1189..1277 +
1622816611.8799465-CDS-L-elsbetiae_contig5720:2934..31661622816611.8799465-CDS-L-elsbetiae_contig5720:2934..3166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5720 2935..3166 +
1691683684.1743166-CDS-L-elsbetiae_contig5720:2934..31661691683684.1743166-CDS-L-elsbetiae_contig5720:2934..3166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5720 2935..3166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5720.14112.1prot_L-elsbetiae_contig5720.14112.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5720 1189..3166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5720.14112.1

>prot_L-elsbetiae_contig5720.14112.1 ID=prot_L-elsbetiae_contig5720.14112.1|Name=mRNA_L-elsbetiae_contig5720.14112.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
QLTRASCRIWTWRGPPSRSSSRRCGPRTTCSGRERWVRAPAGHTRPRGPR
TTTATRRRRTTTTTTTTTTPRRERGGGETRDRQRERPARCRRRVPSDGPR
PEACRYP
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mRNA from alignment at L-elsbetiae_contig5720:1189..3168+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5720.14112.1 ID=mRNA_L-elsbetiae_contig5720.14112.1|Name=mRNA_L-elsbetiae_contig5720.14112.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1980bp|location=Sequence derived from alignment at L-elsbetiae_contig5720:1189..3168+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCTTACCAGGGCATCCTGCAGGATATGGACATGGAGAGGGCCACCCTC
CAGGAGCAGCTCGCGGCGGTGCGGGCCGAGAACGACATGGTGAGAGAGAG
CCCTCCTCCCAGCCCACCCCAGGGTTTTGGAGAAAGGAAACGAAAATCCG
TTAAAAGACCTACTCCGGACCTACCTACCTTACCTACTCCAGGGCCGTCA
ACGGAGGGTGGTGGTACCGAACCTGCGGTAAAATAGGCTCGAAAAGACAG
ACGTGTGCAAAATGTCTGTCCGTAGTTTCTACTATCTATGGTGGTACAAG
GGCGCTTCGCGGCGGTGTTTAGGGCGGCCGCCGCTACGCTCATAGGCTGC
AGGACGATGTGTCAAAGTGTGGTAGCCGAGACTGTCAGAGATCTGCCCGA
CGGGGAACGTCCCAAATAACGCCCCCCGCGGAAAAAACTCTTCTTAGTCC
ACCCGTCGGCATTTTTGCGGGAAGTTGCGACCGACTGCTCCGCCCGCGAA
ACACAGAAAAAGGTTTTCAAGAACGGATAATAGAAAACAAAAATATCAAT
TAAAAATATTGAAAGCTACAATAATGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTTTTTTTTCCGCCCGTCATTGACATATTCGTCGTCTGCCCCA
CTGCCCCCCTTCCTCCACTTACTAGCTAGACGACCCAACCGGGGTCACAC
AGGAGGGGGGGTTGGACCCCCCCCCCCCCCCTGCGGTAGCGACATTTGGA
GGATACATACAACGCGTGCCCCCGGCGTTGCCCCCGCGGGGGGGGTGCGC
CCCGCCCCGGCGGAAAAAGGGCGTCGCGAGCTCGTCTCCCCCCCCCCCCC
CCCCCGGAAGGTTCAACACGAACATTGGGCCGCCGGTGAAGACGGCCTAA
ATATCTGTACTGACTTTTTGTCACTTTTTCAATAAATAGACTTGGGCGGC
CGTTGTTGGACGAGCCTTGAGGAGATCTCGGAGATGTGAAATTGCGCCCG
CGCCATGTATTGTATTTAGCGCTGCGTGATGCGTGACCGCCGCACCTGAG
AGCAACCCGCATGCGACCCAGGCCCTCGCAAGGCCAGACCTACCGAGACA
GCTGCAAGACTGGCCTTGAAACGAGGTCTCTGCTTGTACATAAGCGGCAG
AAGAAAACACTGCAAAAAAACAAATTCTACAGTAGAGCGCCGAGACACTA
TTGTATACCTATACACCATTCCTGAACGCTCTCAGGCCTCGAGGATGAAC
GAATGAATGAATGTATGTATGTATGTTTGTATGTATATATGTATGCCTAT
GTATGTCTATATACTACCTAGAGCAGTAAATGTGAACGACCTGTGTACAT
CCGCATGTACGTGCGTCCGACCTGCTGGGGAAAAGTCTTTCCAACTTACA
CCCTGTAGAGGTAAATAGTATACATAATTACTTCGAAGTATTTACATACG
AGTCGCAACGAGAACGAAGACAACGCATGATAAACGAGCGCGACCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGCGCCGGGGCGGCCCGNN
NNNNNNNNTTCAAAGTATTTCAAACCGCGGCCCAAAGAGACACAAACAAA
CCCCTATTAACCGGGCCCCCCCCCCCCCCCCCCCCCTCCCCCTGCCTTCC
CTGCCCCCCCTGCCCCCCTCTCCTGTCCCCGGCCCGACCCGGCCAGCTCC
GGTCGAGAGCGATGGGTCCGCGCACCGGCCGGACACACTCGTCCTCGGGG
GCCTCGTACAACGACAGCGACAAGGAGAAGAAGGACCACCACCACCACCA
CCACCACCACCACACCCCGCCGCGAGAGAGGGGGGGGGGAGACGCGGGAT
CGTCAGAGAGAGAGGCCAGCCCGCTGCCGACGCCGCGTTCCTTCGGACGG
CCCAAGGCCAGAGGCATGTCGCTATCCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5720:1189..3168+

>mRNA_L-elsbetiae_contig5720.14112.1 ID=mRNA_L-elsbetiae_contig5720.14112.1|Name=mRNA_L-elsbetiae_contig5720.14112.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig5720:1189..3168+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCTTACCAGGGCATCCTGCAGGATATGGACATGGAGAGGGCCACCCTC
CAGGAGCAGCTCGCGGCGGTGCGGGCCGAGAACGACATGCAGCTTACCAG
GGCATCCTGCAGGATATGGACATGGAGAGGGCCACCCTCCAGGAGCAGCT
CGCGGCGGTGCGGGCCGAGAACGACATGCTCCGGTCGAGAGCGATGGGTC
CGCGCACCGGCCGGACACACTCGTCCTCGGGGGCCTCGTACAACGACAGC
GACAAGGAGAAGAAGGACCACCACCACCACCACCACCACCACCACACCCC
GCCGCGAGAGAGGGGGGGGGGAGACGCGGGATCGTCAGAGAGAGAGGCCA
GCCCGCTGCCGACGCCGCGTTCCTTCGGACGGCCCAAGGCCAGAGGCATG
TCGCTATCCCCTCCGGTCGAGAGCGATGGGTCCGCGCACCGGCCGGACAC
ACTCGTCCTCGGGGGCCTCGTACAACGACAGCGACAAGGAGAAGAAGGAC
CACCACCACCACCACCACCACCACCACACCCCGCCGCGAGAGAGGGGGGG
GGGAGACGCGGGATCGTCAGAGAGAGAGGCCAGCCCGCTGCCGACGCCGC
GTTCCTTCGGACGGCCCAAGGCCAGAGGCATGTCGCTATCCC
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