mRNA_L-elsbetiae_contig572.14108.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig572.14108.1 vs. uniprot
Match: D7FV86_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV86_ECTSI) HSP 1 Score: 606 bits (1563), Expect = 1.480e-205 Identity = 338/540 (62.59%), Postives = 383/540 (70.93%), Query Frame = 1 Query: 184 GTSSSALSFLERSRRPESSSLPAT-----WPAGFVPPPSKTDHHRDRASSTHIPRLPRTSALAFLERPPIGGGTGGASTNSVVTGAGAEAGLGWLSGGVVATGSGRGGFLPRAHSSIGGSGSEDSDESDELDSDICPSMLFSCFPCLSWFRPTRHRWQPDLLDGTGSVDSMGASTSGIRRHSRTKKGLGRPLLAEQPLPQADFPKDVKLIEVEVESARNLPLGERVNMADLAGTYAILRVSPAQEGVGEQAVQTSLATRPVNPSWGGRETFTFFVTDTGNSKAFLAIQILYRPLRAPSSXXXXXXXXXXXXXXXXXXXXMSGSSSSLSRSLPGTRRGDVVIGEGFVDLLGLFPVVDGTYTPGALKGNSRRVAVPMREPEGKTRTKCSVMLGLRCRRVNETIDTHEDRIYEYERWTQVAGWSTAGKRREGKWSTLDGSILSDTFADVAPPARVNAEVVLPWCPFGGWEYSRAEEEKSPSASTARTPPKKPTSRNGELDGLSPTSGGAEGWDNFAVAQKGAVWMEGYVQGYQAVRRRLWRRV 1788 G SS+ALSFLERS R S A WP GFVPP + S ++ P LPRTSALAFLER P G A N++V GAGAE GLG LSGG+VA G+ RGGFLPR + + GSE SD E DSDICPSML+SCFPC +W R + R DLLDG G +S ++R SR + L PLL EQP +FP DVKLIEVEVESARNLPLGERVNMADLAGTYAILR++P QEGVGEQ QTSLATRPVNPSWGGRETFTFFVTD SKAFL++Q+LYRPLR P + S +SL+ G+R GDV I EGFVDLLGLF +VDGTYTPG +KGN+RRVAVPMREP+GK RT+CSVMLGLRCRRVNETIDT EDR+YEYERWT+VAGWSTAGK+R GKWSTLDGS+LSD FADVAP + EVVLPWCPFGGWEYSR EE + + +T + + G D +P+ G E W+NFAVAQKGAVWMEGYVQG QAVRRRLWRRV Sbjct: 91 GRSSNALSFLERSDRSTDSPTVAAATTNPWPVGFVPPQGTKSNRTTGWSQSYTPYLPRTSALAFLERAP-----GRARGNNIVGGAGAEDGLGTLSGGMVAAGADRGGFLPRPYDT----GSECSDA--EEDSDICPSMLYSCFPCFNWSRRGKRR-PADLLDG-GLANS-------VKRESRAQLSLSTPLLTEQPPSPTNFPTDVKLIEVEVESARNLPLGERVNMADLAGTYAILRITPVQEGVGEQVNQTSLATRPVNPSWGGRETFTFFVTDVAGSKAFLSLQLLYRPLRPPPAPQPLQPPLPLRR---------GASEASLASVSSGSRHGDVTIAEGFVDLLGLFSLVDGTYTPGTMKGNARRVAVPMREPKGKRRTRCSVMLGLRCRRVNETIDTREDRLYEYERWTRVAGWSTAGKKRAGKWSTLDGSVLSDNFADVAPGVGEDTEVVLPWCPFGGWEYSRGEETPASAGNTGTS-----EAGGGRRDEFAPSLGAQE-WENFAVAQKGAVWMEGYVQGDQAVRRRLWRRV 595 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig572.14108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig572.14108.1 >prot_L-elsbetiae_contig572.14108.1 ID=prot_L-elsbetiae_contig572.14108.1|Name=mRNA_L-elsbetiae_contig572.14108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=586bp MAESKRRDGAMVVRSSPSAAVVRRATEPSGTSSSALSFLERSRRPESSSLback to top mRNA from alignment at L-elsbetiae_contig572:1892..12518+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig572.14108.1 ID=mRNA_L-elsbetiae_contig572.14108.1|Name=mRNA_L-elsbetiae_contig572.14108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10627bp|location=Sequence derived from alignment at L-elsbetiae_contig572:1892..12518+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig572:1892..12518+ >mRNA_L-elsbetiae_contig572.14108.1 ID=mRNA_L-elsbetiae_contig572.14108.1|Name=mRNA_L-elsbetiae_contig572.14108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3516bp|location=Sequence derived from alignment at L-elsbetiae_contig572:1892..12518+ (Laminarionema elsbetiae ELsaHSoW15)back to top |