mRNA_L-elsbetiae_contig5715.14103.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5715.14103.1
Unique NamemRNA_L-elsbetiae_contig5715.14103.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5715.14103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5715contigL-elsbetiae_contig5715:10468..11161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size694
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5715.14103.1prot_L-elsbetiae_contig5715.14103.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5715 10541..11005 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816610.5686853-UTR-L-elsbetiae_contig5715:10467..105401622816610.5686853-UTR-L-elsbetiae_contig5715:10467..10540Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5715 10468..10540 +
1691683683.1516309-UTR-L-elsbetiae_contig5715:10467..105401691683683.1516309-UTR-L-elsbetiae_contig5715:10467..10540Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5715 10468..10540 +
1622816610.5904086-UTR-L-elsbetiae_contig5715:11005..111611622816610.5904086-UTR-L-elsbetiae_contig5715:11005..11161Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5715 11006..11161 +
1691683683.1801136-UTR-L-elsbetiae_contig5715:11005..111611691683683.1801136-UTR-L-elsbetiae_contig5715:11005..11161Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5715 11006..11161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816610.5796127-CDS-L-elsbetiae_contig5715:10540..110051622816610.5796127-CDS-L-elsbetiae_contig5715:10540..11005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5715 10541..11005 +
1691683683.1690555-CDS-L-elsbetiae_contig5715:10540..110051691683683.1690555-CDS-L-elsbetiae_contig5715:10540..11005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5715 10541..11005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5715.14103.1

>prot_L-elsbetiae_contig5715.14103.1 ID=prot_L-elsbetiae_contig5715.14103.1|Name=mRNA_L-elsbetiae_contig5715.14103.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=155bp
MGVGVAADEFDIGYKVFRSGNDVGRFGRRSKADAVECGRRLLAAYSVSGV
LFAGGPSVLRGKGLRVFVVSGWFLRCSAVLLCACKTAGMSTRCLLRTLAR
LGEKHGNYVGKRWMQMNAEHTSESGTSNACALVLLHRVLVQMRKFVVFLS
CSTT*
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mRNA from alignment at L-elsbetiae_contig5715:10468..11161+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5715.14103.1 ID=mRNA_L-elsbetiae_contig5715.14103.1|Name=mRNA_L-elsbetiae_contig5715.14103.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=694bp|location=Sequence derived from alignment at L-elsbetiae_contig5715:10468..11161+ (Laminarionema elsbetiae ELsaHSoW15)
ATTTGAGTGACGGCCAGTTTTCACGAAAGGGTGGTGAGGGCAGTGTCGTG
GCGACGTCTGAGTTGATGGGTTGATGGGGGTGGGGGTGGCTGCCGATGAA
TTCGATATAGGATACAAGGTGTTTCGTTCGGGAAATGATGTAGGTCGTTT
CGGCCGGCGCAGCAAGGCGGACGCAGTGGAATGCGGCCGCCGGCTGTTGG
CTGCCTACTCGGTCTCGGGGGTTTTGTTTGCGGGGGGGCCAAGTGTGTTG
AGAGGGAAAGGCCTCCGTGTTTTTGTGGTGTCAGGTTGGTTTTTGCGTTG
TTCTGCTGTACTTCTGTGTGCCTGTAAAACCGCCGGGATGTCCACACGCT
GCTTGCTGCGTACCCTAGCTAGGCTCGGTGAGAAACATGGCAATTACGTC
GGTAAAAGATGGATGCAGATGAATGCTGAACATACGAGCGAGTCAGGTAC
CAGTAACGCGTGCGCTCTTGTTCTACTACATAGGGTACTCGTACAGATGA
GGAAATTCGTCGTCTTCCTCTCTTGTTCAACTACATAGGGTACTCGTAAA
TATGAGGAGATTCGTTGCCTTCCTCTCTTGGTGTGTAGAGCCGCCCAGCG
GAATAAAGCTATGCACGCATGCGAGGCGGCCGCCTTGTTTCGTCGCCGTG
CGGTCTGCGCTGTGCTAGCGGTGCGCGGGTGTTCGGTTTTGCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5715:10468..11161+

>mRNA_L-elsbetiae_contig5715.14103.1 ID=mRNA_L-elsbetiae_contig5715.14103.1|Name=mRNA_L-elsbetiae_contig5715.14103.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=930bp|location=Sequence derived from alignment at L-elsbetiae_contig5715:10468..11161+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGTGGGGGTGGCTGCCGATGAATTCGATATAGGATACAAGGTGTT
TCGTTCGGGAAATGATGTAGGTCGTTTCGGCCGGCGCAGCAAGGCGGACG
CAGTGGAATGCGGCCGCCGGCTGTTGGCTGCCTACTCGGTCTCGGGGGTT
TTGTTTGCGGGGGGGCCAAGTGTGTTGAGAGGGAAAGGCCTCCGTGTTTT
TGTGGTGTCAGGTTGGTTTTTGCGTTGTTCTGCTGTACTTCTGTGTGCCT
GTAAAACCGCCGGGATGTCCACACGCTGCTTGCTGCGTACCCTAGCTAGG
CTCGGTGAGAAACATGGCAATTACGTCGGTAAAAGATGGATGCAGATGAA
TGCTGAACATACGAGCGAGTCAGGTACCAGTAACGCGTGCGCTCTTGTTC
TACTACATAGGGTACTCGTACAGATGAGGAAATTCGTCGTCTTCCTCTCT
TGTTCAACTACATAGATGGGGGTGGGGGTGGCTGCCGATGAATTCGATAT
AGGATACAAGGTGTTTCGTTCGGGAAATGATGTAGGTCGTTTCGGCCGGC
GCAGCAAGGCGGACGCAGTGGAATGCGGCCGCCGGCTGTTGGCTGCCTAC
TCGGTCTCGGGGGTTTTGTTTGCGGGGGGGCCAAGTGTGTTGAGAGGGAA
AGGCCTCCGTGTTTTTGTGGTGTCAGGTTGGTTTTTGCGTTGTTCTGCTG
TACTTCTGTGTGCCTGTAAAACCGCCGGGATGTCCACACGCTGCTTGCTG
CGTACCCTAGCTAGGCTCGGTGAGAAACATGGCAATTACGTCGGTAAAAG
ATGGATGCAGATGAATGCTGAACATACGAGCGAGTCAGGTACCAGTAACG
CGTGCGCTCTTGTTCTACTACATAGGGTACTCGTACAGATGAGGAAATTC
GTCGTCTTCCTCTCTTGTTCAACTACATAG
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