mRNA_L-elsbetiae_contig571.14097.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig571.14097.1
Unique NamemRNA_L-elsbetiae_contig571.14097.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig571.14097.1 vs. uniprot
Match: D7G5U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U5_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 8.890e-25
Identity = 56/131 (42.75%), Postives = 78/131 (59.54%), Query Frame = 2 
Query:  371 EHATVLLNNDNVNKQVLHRDHCGEDIDAKMRGEGRGP---RSRPQPPPFSALCAFQENTVLHAIDGSHLKPLRTQFSTNQAKKREIPVGWVCLFHATLIHGGMGSSGLYHARAHMYLKPRGMPTVYGGKIE 754
            E +T LL+ + +  QVLHRD   E I  +M G  +      SRPQPPP+SALCAFQE T+L  +DGSHL  +   +   +A + +IP GW  L+H   +HGG G +  + AR H++L+  G P    GKI+
Sbjct:   23 EISTCLLSLEGLLAQVLHRDQVLEKITDQMAGRTQAATRGNSRPQPPPYSALCAFQEGTILRIVDGSHLD-VHKNYEQGRAVECQIPRGWGLLWHGLSVHGGDGCTAAWLARLHIFLRALGCPQAATGKID 152
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BLAST of mRNA_L-elsbetiae_contig571.14097.1 vs. uniprot
Match: D7G604_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G604_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 2.570e-22
Identity = 55/131 (41.98%), Postives = 75/131 (57.25%), Query Frame = 2 
Query:  371 EHATVLLNNDNVNKQVLHRDHCGEDIDAKMRGE---GRGPRSRPQPPPFSALCAFQENTVLHAIDGSHLKPLRTQFSTNQAKKREIPVGWVCLFHATLIHGGMGSSGLYHARAHMYLKPRGMPTVYGGKIE 754
            E +T LL+ + +  QV HRD   E I  +M G    G    SRPQPPP+SALCA QE T+L  +DGSHL  +   +    A + +IP GW  L+H   +HGG G +  + AR H++L+  G P    GKI+
Sbjct:  134 EISTCLLSLEGLLAQVFHRDQVLEKITDQMAGRTQAGTRGNSRPQPPPYSALCAVQEGTILRIVDGSHLD-VHKNYEQGSAVECQIPRGWGLLWHGLSVHGGDGCTAAWLARLHIFLRALGCPQAATGKID 263
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BLAST of mRNA_L-elsbetiae_contig571.14097.1 vs. uniprot
Match: UPI0000161E52 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E52)

HSP 1 Score: 95.5 bits (236), Expect = 8.850e-19
Identity = 62/169 (36.69%), Postives = 87/169 (51.48%), Query Frame = 2 
Query:  266 GKSLLGARERWSIR*AVSCLLSPMERTRDGRYVEV---EHATVLLNNDNVNKQVLHRDHCGEDIDAKMRGEGRGPRSRPQPPPFSALCAFQENTVLHAIDGSHLKPLRTQFSTNQAKKREIPVGWVCLFHATLIHGGMGSSG---LYHARAHMYLKPRGMPTVYGGKIE 754
            G ++   +E  S+  AV C +       DG  V V   +HA  L N      Q+ HRD   +++ AK     +  R+RP+P PFSA+ AFQENTVLH + GSH +     FS +      IP+G+  +F++ L+H GMG+ G     + R HMYL   G      GKIE
Sbjct:   40 GGTVAAFKEIASLLAAVLCAVV------DGASVGVVTHKHAA-LANAMGTGVQMWHRDGRAKEVLAKTHPSHKDKRTRPEPHPFSAVIAFQENTVLHVVRGSHNRGEENDFSQDAPHAHHIPIGYAAVFYSILVHRGMGTDGDRPSENVRGHMYLTVAGCTLPSFGKIE 201
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BLAST of mRNA_L-elsbetiae_contig571.14097.1 vs. uniprot
Match: D8LP46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.760e-7
Identity = 29/76 (38.16%), Postives = 43/76 (56.58%), Query Frame = 2 
Query:  413 QVLHRDHCGEDIDAKMRGEGRGPRSRPQPPPFSALCAFQENTVLHAIDGSHLKPLRTQFSTNQAKKREIPVGWVCL 640
            Q+ HRD   +++ AK     +  R RP+P PFSA+ AF+ENTVLH + GSH +     FS +      I +G+  +
Sbjct:  241 QMWHRDGRAKEVLAKTNPSHKDNRKRPEPHPFSAVIAFEENTVLHVVRGSHNRGKENDFSQDAPHAHHITIGYAAI 316
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig571.14097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G5U5_ECTSI8.890e-2542.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G604_ECTSI2.570e-2241.98Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
UPI0000161E528.850e-1936.69hypothetical protein n=1 Tax=Ectocarpus siliculosu... [more]
D8LP46_ECTSI1.760e-738.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig571contigL-elsbetiae_contig571:33422..34201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size757
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig571.14097.1prot_L-elsbetiae_contig571.14097.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig571 33422..33844 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816610.0085166-CDS-L-elsbetiae_contig571:33421..338441622816610.0085166-CDS-L-elsbetiae_contig571:33421..33844Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig571 33422..33844 -
1691683682.8450887-CDS-L-elsbetiae_contig571:33421..338441691683682.8450887-CDS-L-elsbetiae_contig571:33421..33844Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig571 33422..33844 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816610.0192287-UTR-L-elsbetiae_contig571:33844..340221622816610.0192287-UTR-L-elsbetiae_contig571:33844..34022Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig571 33845..34022 -
1691683682.8614626-UTR-L-elsbetiae_contig571:33844..340221691683682.8614626-UTR-L-elsbetiae_contig571:33844..34022Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig571 33845..34022 -
1622816610.0330832-UTR-L-elsbetiae_contig571:34045..342011622816610.0330832-UTR-L-elsbetiae_contig571:34045..34201Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig571 34046..34201 -
1691683682.8737526-UTR-L-elsbetiae_contig571:34045..342011691683682.8737526-UTR-L-elsbetiae_contig571:34045..34201Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig571 34046..34201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig571.14097.1

>prot_L-elsbetiae_contig571.14097.1 ID=prot_L-elsbetiae_contig571.14097.1|Name=mRNA_L-elsbetiae_contig571.14097.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
MERTRDGRYVEVEHATVLLNNDNVNKQVLHRDHCGEDIDAKMRGEGRGPR
SRPQPPPFSALCAFQENTVLHAIDGSHLKPLRTQFSTNQAKKREIPVGWV
CLFHATLIHGGMGSSGLYHARAHMYLKPRGMPTVYGGKIE*
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mRNA from alignment at L-elsbetiae_contig571:33422..34201-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig571.14097.1 ID=mRNA_L-elsbetiae_contig571.14097.1|Name=mRNA_L-elsbetiae_contig571.14097.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig571:33422..34201- (Laminarionema elsbetiae ELsaHSoW15)
CGCCACTATGCAGTGGAGATCGCGATACGGGATTTCAGAGAATCACCCTA
CGGCAAACTAGCACTGTCCTTACTCCACCACGATGGACTCCTTCTGGTGC
CCCTTTTCTCGTCCGCCAGCGTCGCAGAGAAAGTGAGCCAAATGCGCCGC
GCGGTTGTAGATAGGTTGCTGATGACAAGTTGCTGATGAAAAACGATGAC
GGAAACTACACGGTATCCGATCGAGTATTGAAAAAGGAGCCGCGAATCAC
TGGTGAAACTAGATTCATGGTCAAGCCGGGAAAACTAGGGCAAGAGTTTG
TTAGGCGCACGGGAGAGATGGTCGATACGTTGAGCTGTGTCTTGCTTGCT
ATCGCCTATGGAGCGTACGAGAGATGGTCGATACGTTGAGGTAGAACACG
CTACTGTGCTGCTAAACAATGACAACGTGAACAAACAAGTACTGCACAGA
GATCACTGCGGAGAGGATATCGATGCAAAGATGCGTGGGGAAGGCCGTGG
ACCAAGGAGTCGGCCGCAACCCCCGCCCTTTTCTGCGTTATGCGCCTTTC
AAGAAAACACTGTCTTACATGCCATAGACGGAAGCCACCTGAAACCTCTC
CGGACACAGTTTAGCACGAATCAGGCCAAGAAACGCGAAATTCCTGTTGG
ATGGGTCTGTTTATTTCATGCGACTCTAATTCACGGGGGCATGGGGTCAT
CCGGGCTGTACCACGCTCGGGCGCATATGTATCTCAAACCCAGAGGCATG
CCGACTGTGTATGGTGGCAAAATTGAATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig571:33422..34201-

>mRNA_L-elsbetiae_contig571.14097.1 ID=mRNA_L-elsbetiae_contig571.14097.1|Name=mRNA_L-elsbetiae_contig571.14097.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig571:33422..34201- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCGTACGAGAGATGGTCGATACGTTGAGGTAGAACACGCTACTGT
GCTGCTAAACAATGACAACGTGAACAAACAAGTACTGCACAGAGATCACT
GCGGAGAGGATATCGATGCAAAGATGCGTGGGGAAGGCCGTGGACCAAGG
AGTCGGCCGCAACCCCCGCCCTTTTCTGCGTTATGCGCCTTTCAAGAAAA
CACTGTCTTACATGCCATAGACGGAAGCCACCTGAAACCTCTCCGGACAC
AGTTTAGCACGAATCAGGCCAAGAAACGCGAAATTCCTGTTGGATGGGTC
TGTTTATTTCATGCGACTCTAATTCACGGGGGCATGGGGTCATCCGGGCT
GTACCACGCTCGGGCGCATATGTATCTCAAACCCAGAGGCATGCCGACTG
TGTATGGTGGCAAAATTGAATGAATGGAGCGTACGAGAGATGGTCGATAC
GTTGAGGTAGAACACGCTACTGTGCTGCTAAACAATGACAACGTGAACAA
ACAAGTACTGCACAGAGATCACTGCGGAGAGGATATCGATGCAAAGATGC
GTGGGGAAGGCCGTGGACCAAGGAGTCGGCCGCAACCCCCGCCCTTTTCT
GCGTTATGCGCCTTTCAAGAAAACACTGTCTTACATGCCATAGACGGAAG
CCACCTGAAACCTCTCCGGACACAGTTTAGCACGAATCAGGCCAAGAAAC
GCGAAATTCCTGTTGGATGGGTCTGTTTATTTCATGCGACTCTAATTCAC
GGGGGCATGGGGTCATCCGGGCTGTACCACGCTCGGGCGCATATGTATCT
CAAACCCAGAGGCATGCCGACTGTGTATGGTGGCAAAATTGAATGA
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