mRNA_L-elsbetiae_contig570.14087.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig570.14087.1
Unique NamemRNA_L-elsbetiae_contig570.14087.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig570.14087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig570contigL-elsbetiae_contig570:25947..26539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size593
Cds size483
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816609.1182358-UTR-L-elsbetiae_contig570:25946..260561622816609.1182358-UTR-L-elsbetiae_contig570:25946..26056Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig570 25947..26056 +
1691683682.266401-UTR-L-elsbetiae_contig570:25946..260561691683682.266401-UTR-L-elsbetiae_contig570:25946..26056Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig570 25947..26056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816609.1335292-CDS-L-elsbetiae_contig570:26056..265391622816609.1335292-CDS-L-elsbetiae_contig570:26056..26539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig570 26057..26539 +
1691683682.2754712-CDS-L-elsbetiae_contig570:26056..265391691683682.2754712-CDS-L-elsbetiae_contig570:26056..26539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig570 26057..26539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig570.14087.1prot_L-elsbetiae_contig570.14087.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig570 26057..26539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig570.14087.1

>prot_L-elsbetiae_contig570.14087.1 ID=prot_L-elsbetiae_contig570.14087.1|Name=mRNA_L-elsbetiae_contig570.14087.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
MTMLITLVVVSRGPGVSVCRRLSSHIGCLSWALVCRRRPFRGRGHRSQTK
QAGEMVNSSYALSVFLLGRPNITSLMYLYGIPTESHIVPVPLFINRCFSL
QNKPFLQKVVCRPDLFPRMNSFILFLSLCTMFIWDRPVYLPTIHTRCGHS
VPPGQLCFSCR
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mRNA from alignment at L-elsbetiae_contig570:25947..26539+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig570.14087.1 ID=mRNA_L-elsbetiae_contig570.14087.1|Name=mRNA_L-elsbetiae_contig570.14087.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=593bp|location=Sequence derived from alignment at L-elsbetiae_contig570:25947..26539+ (Laminarionema elsbetiae ELsaHSoW15)
AGCACGGCTTGGTCCCCTTCACCGTCACCGTGGGCCCCTCCGTCGCCTGC
GACTGGCAAGTAAAATACCTGCTTTTTTTTTTCTGCTCTTTTTTCCATGA
TCGATGATGGATGACGATGCTGATCACGCTGGTTGTTGTCAGTCGGGGTC
CTGGTGTGTCTGTGTGTCGCCGTCTTTCTAGCCATATCGGGTGTTTGTCT
TGGGCTTTGGTGTGTCGTCGTCGTCCCTTTCGTGGTCGTGGTCACCGTTC
TCAAACAAAGCAAGCAGGGGAGATGGTGAATTCTTCTTATGCTTTAAGTG
TTTTTCTACTCGGCCGGCCCAATATTACGTCACTAATGTATCTATATGGA
ATACCGACGGAATCTCACATTGTCCCGGTTCCACTTTTTATTAACCGCTG
TTTTTCCTTACAAAATAAACCATTCCTACAAAAAGTGGTTTGCCGCCCCG
ATTTATTTCCACGAATGAATTCGTTTATTTTATTTTTATCTCTGTGTACC
ATGTTTATTTGGGATCGGCCCGTATACCTACCTACCATACATACCAGGTG
CGGGCATTCCGTGCCCCCGGGGCAGCTGTGCTTCAGCTGCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig570:25947..26539+

>mRNA_L-elsbetiae_contig570.14087.1 ID=mRNA_L-elsbetiae_contig570.14087.1|Name=mRNA_L-elsbetiae_contig570.14087.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig570:25947..26539+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGATGCTGATCACGCTGGTTGTTGTCAGTCGGGGTCCTGGTGTGTC
TGTGTGTCGCCGTCTTTCTAGCCATATCGGGTGTTTGTCTTGGGCTTTGG
TGTGTCGTCGTCGTCCCTTTCGTGGTCGTGGTCACCGTTCTCAAACAAAG
CAAGCAGGGGAGATGGTGAATTCTTCTTATGCTTTAAGTGTTTTTCTACT
CGGCCGGCCCAATATTACGTCACTAATGTATCTATATGGAATACCGACGG
AATCTCACATTGTCCCGGTTCCACTTTTTATTAACCGCTGTTTTTCCTTA
CAAAATAAACCATTCCTACAAAAAGTGGTTTGCCGCCCCGATTTATTTCC
ACGAATGAATTCGTTTATTTTATTTTTATCTCTGTGTACCATGTTTATTT
GGGATCGGCCCGTATACCTACCTACCATACATACCAGGTGCGGGCATTCC
GTGCCCCCGGGGCAGCTGTGCTTCAGCTGCCGGATGACGATGCTGATCAC
GCTGGTTGTTGTCAGTCGGGGTCCTGGTGTGTCTGTGTGTCGCCGTCTTT
CTAGCCATATCGGGTGTTTGTCTTGGGCTTTGGTGTGTCGTCGTCGTCCC
TTTCGTGGTCGTGGTCACCGTTCTCAAACAAAGCAAGCAGGGGAGATGGT
GAATTCTTCTTATGCTTTAAGTGTTTTTCTACTCGGCCGGCCCAATATTA
CGTCACTAATGTATCTATATGGAATACCGACGGAATCTCACATTGTCCCG
GTTCCACTTTTTATTAACCGCTGTTTTTCCTTACAAAATAAACCATTCCT
ACAAAAAGTGGTTTGCCGCCCCGATTTATTTCCACGAATGAATTCGTTTA
TTTTATTTTTATCTCTGTGTACCATGTTTATTTGGGATCGGCCCGTATAC
CTACCTACCATACATACCAGGTGCGGGCATTCCGTGCCCCCGGGGCAGCT
GTGCTTCAGCTGCCGG
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