mRNA_L-elsbetiae_contig57.14083.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig57.14083.1
Unique NamemRNA_L-elsbetiae_contig57.14083.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig57.14083.1 vs. uniprot
Match: D8LF02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF02_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.280e-6
Identity = 30/57 (52.63%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:  130 SREEMAESRRTRCREWIDNANTDMKSW------VREPQPSVFKHTFRDRQSDAEIGP 282
            SREEMA+S RTRC EW+DNAN DMKSW      V  P     ++  R R+   EIGP
Sbjct:   24 SREEMAQSSRTRCCEWVDNANADMKSWAKIRGRVEHPHWEPPRYFLRPREKAKEIGP 80
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig57.14083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LF02_ECTSI1.280e-652.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig57contigL-elsbetiae_contig57:55673..58202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_006200.1
Exons3
Model size462
Cds size462
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig57.14083.1prot_L-elsbetiae_contig57.14083.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig57 55673..58202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816608.9445024-CDS-L-elsbetiae_contig57:55672..558061622816608.9445024-CDS-L-elsbetiae_contig57:55672..55806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig57 55673..55806 +
1691683682.1785278-CDS-L-elsbetiae_contig57:55672..558061691683682.1785278-CDS-L-elsbetiae_contig57:55672..55806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig57 55673..55806 +
1622816608.9575348-CDS-L-elsbetiae_contig57:57480..576661622816608.9575348-CDS-L-elsbetiae_contig57:57480..57666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig57 57481..57666 +
1691683682.187286-CDS-L-elsbetiae_contig57:57480..576661691683682.187286-CDS-L-elsbetiae_contig57:57480..57666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig57 57481..57666 +
1622816608.9693112-CDS-L-elsbetiae_contig57:58060..582021622816608.9693112-CDS-L-elsbetiae_contig57:58060..58202Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig57 58061..58202 +
1691683682.195665-CDS-L-elsbetiae_contig57:58060..582021691683682.195665-CDS-L-elsbetiae_contig57:58060..58202Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig57 58061..58202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig57.14083.1

>prot_L-elsbetiae_contig57.14083.1 ID=prot_L-elsbetiae_contig57.14083.1|Name=mRNA_L-elsbetiae_contig57.14083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
MFSLRTQEKLDAERNQNSSREILWKHLNDKNKSGRMVRRIYNKSREEMAE
SRRTRCREWIDNANTDMKSWVREPQPSVFKHTFRDRQSDAEIGPANGHVS
SRKYIPRLVFSGGGELDKEKTADLVETLMEPSQMRGNDPKALQNPCRPTV
IVTD
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mRNA from alignment at L-elsbetiae_contig57:55673..58202+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig57.14083.1 ID=mRNA_L-elsbetiae_contig57.14083.1|Name=mRNA_L-elsbetiae_contig57.14083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2530bp|location=Sequence derived from alignment at L-elsbetiae_contig57:55673..58202+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCTCTTTGAGAACGCAGGAGAAGCTGGATGCTGAACGCAACCAAAA
CTCCTCGCGTGAAATACTATGGAAACACCTGAACGACAAGAATAAGTCGG
GCCGCATGGTGCGCCGAATCTACAATAAGTCCAGGTGTGTTTGTTTGGTG
CAGGACTAATTGGCGGTAGGCAGAGTAGCACCCCTACTTTCAGATACGTC
ATGCTTTTCGTGCGACCGGAGAATCCAGAACGACAGCTCACGGTCGCGTG
CAATACATGTTGTTGTTGTTGTCTTCACATTAGAATGAAAAAACGTTCTG
ATCTCTCTATCAAGTACACCCCCATGAGACCGTGTACTAATCCAACACTG
ACGCGGTCAATTCCCGTGGTCACAGGATAACTTACCCTAAAAGGGTATAG
TATAGACTACTGAAAAATAAAAATAAATAAAACGGACCCGAGGGGCCCAC
AAAGCACAAAACAAAAGATGAGATATTCATAGTCTTGTGGGTACCACCCT
CATAAAGGTACCACATAAAGGTATCAACCTCATAAAGGGGTCGGATCACA
CTAACGTCTGTCGAGGACAAAACCCTATTTTCCACAATGGCGTCGACGAT
TAGATACTGGGATATGGTGGACAACGTCCCGAGTTCGAATCTCTCCATCA
AGATTTCTTTTTCAGGAAAAAAAACTCTCTTGGAAAAAAAAAAGAAACAA
AATGGGGGATAGAAACCAAGACCCGATAATCGAACTCGTGACTTCTAAGC
GCTGTGGCGGAAGTGGCGAACCCGCTAAAACACGCACAAAGAAGAATGTT
GGAAAAAGATGGTGGACGTACCACCCTCATAAAGGTACCACATAAAGGTA
TCAACCTCATAAAGGGTCGGATCACACTTACGTCTGTCGAGGACAAAACC
CTCTTTTCCACAGTCTAGATATATCTAGATAGTCTGGAGCCCTCCGCTCC
CATCTACACGCTATGCGAGGTGAAAAAAAAAGTGGACAAGCCAACATCAC
CAACCGCGGAGGGATGCGCCCCCTGGTTCTATCTTGGTTCCCCAAACAAT
GCCGGGGTGTTCCGCGCCGGGTTCTCGCCGGCCAGGCCACCGATCTACAT
ATATATCCTCCCCATCTCGTACCGCACCCATGATACAGTAAGAGGGAAAG
AACATCGGATAATAAACAAGCCAACATACAAACAAAACAAACAAACAAAC
ACACATAAAAACCCCAGACAAACAAACACCTCATCGCTCCCCCGGCGGTG
TTGCAAGATAGTACAGCAGTGGGAGGTGGGAGATTAGTCAAGAGTTCATT
CCGCAACATGTCGCGCTACCTCCTCCGCCTCCGCTCTCTTGTATGCGTCG
AGCACCGTTTCGATGGCCTCCAGTTCCTTTCCCCCGCTGGTTGTTGCCGC
ATATATTTTATTGCTGGGCCCTTCTTTGTCTCGTTTGATTGCCCGTTGCA
GGCTAGCCTCCTTCTCCTTCTTGTGCCAGGAGGCCATAAACCCCTCAGCT
CCCCGCAGCACCTCCTCGTGCCATGCCCTTCCCTCTTCCACCTTCGCTGT
TGTCTCCCAGTCGGCGCTGGGAATTTCGAACGCCTTGAAGTCTTCCTTCA
GGCACATCTCCCAGACTATGTCTAGTCTACAATACGAATCTGTAGACTAT
CTATCTAGTCTAGATTATGTGGTCGATGGAGAAGACTACATGCGTATCCA
GTTTATCTACATTTGTGCATGCTGTACTGCAGAATGTGCATTCCAGGCGA
GGAACATTGCAGGTATGTACAATGTTTGACCCCGGTCAGCAACTGGATCC
TCGTGCAGGGAGGAGATGGCAGAATCTCGTCGGACCAGGTGCCGCGAATG
GATTGACAATGCAAACACCGACATGAAGAGCTGGGTCAGGGAACCGCAGC
CATCGGTGTTCAAGCACACTTTCCGTGACAGGCAGTCGGACGCGGAGATT
GGTCCAGCGAACGGGCATGTGTCGAGTCGCAAATACATACCAAGGTGCAG
TGTTCATACTTCTAACACAACACAGAGACTTTGCGGTGTACGAAGGAGGA
CGCCATCCTTGTTTTTGCTGTGCGATTTGTGACCGAAACACACGGTGATG
CAAGAGGTTCAGCTAGAAATATCAACACATAGATGGCACGCCCCCAAAGA
CAACTCCGCAGGGGAGGTTTTGAACTTTCTATTTTTTTATTTTTGTCTTT
AACTCCATAATATTTGAGGTGTTTTTCTACCCGGCCGGACCAATACTACA
TTATGTACATAACTGTTTTGAACTGTCAATTCACCATAGAGTCCCATCTC
TAGTCGAGATTAATGTAGGGAGGTTATTTCTTTGATTTCTTGATTTATTT
TCAAAAGTGGCCTATTTCCATCCATTCCTCTTGAACAGATTGGTCTTCTC
AGGAGGCGGTGAGCTCGACAAGGAGAAAACAGCTGACCTCGTGGAGACGC
TGATGGAACCGAGTCAAATGCGCGGAAACGATCCAAAAGCGTTGCAGAAT
CCCTGTCGTCCGACGGTGATCGTTACTGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig57:55673..58202+

>mRNA_L-elsbetiae_contig57.14083.1 ID=mRNA_L-elsbetiae_contig57.14083.1|Name=mRNA_L-elsbetiae_contig57.14083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig57:55673..58202+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCTCTTTGAGAACGCAGGAGAAGCTGGATGCTGAACGCAACCAAAA
CTCCTCGCGTGAAATACTATGGAAACACCTGAACGACAAGAATAAGTCGG
GCCGCATGGTGCGCCGAATCTACAATAAGTCCAGATGTTCTCTTTGAGAA
CGCAGGAGAAGCTGGATGCTGAACGCAACCAAAACTCCTCGCGTGAAATA
CTATGGAAACACCTGAACGACAAGAATAAGTCGGGCCGCATGGTGCGCCG
AATCTACAATAAGTCCAGGGAGGAGATGGCAGAATCTCGTCGGACCAGGT
GCCGCGAATGGATTGACAATGCAAACACCGACATGAAGAGCTGGGTCAGG
GAACCGCAGCCATCGGTGTTCAAGCACACTTTCCGTGACAGGCAGTCGGA
CGCGGAGATTGGTCCAGCGAACGGGCATGTGTCGAGTCGCAAATACATAC
CAAGGGAGGAGATGGCAGAATCTCGTCGGACCAGGTGCCGCGAATGGATT
GACAATGCAAACACCGACATGAAGAGCTGGGTCAGGGAACCGCAGCCATC
GGTGTTCAAGCACACTTTCCGTGACAGGCAGTCGGACGCGGAGATTGGTC
CAGCGAACGGGCATGTGTCGAGTCGCAAATACATACCAAGATTGGTCTTC
TCAGGAGGCGGTGAGCTCGACAAGGAGAAAACAGCTGACCTCGTGGAGAC
GCTGATGGAACCGAGTCAAATGCGCGGAAACGATCCAAAAGCGTTGCAGA
ATCCCTGTCGTCCGACGGTGATCGTTACTGATATTGGTCTTCTCAGGAGG
CGGTGAGCTCGACAAGGAGAAAACAGCTGACCTCGTGGAGACGCTGATGG
AACCGAGTCAAATGCGCGGAAACGATCCAAAAGCGTTGCAGAATCCCTGT
CGTCCGACGGTGATCGTTACTGAT
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