mRNA_L-elsbetiae_contig5695.14070.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5695.14070.1
Unique NamemRNA_L-elsbetiae_contig5695.14070.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5695.14070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5695contigL-elsbetiae_contig5695:946..1407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size462
Cds size417
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816607.5298986-UTR-L-elsbetiae_contig5695:945..9901622816607.5298986-UTR-L-elsbetiae_contig5695:945..990Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5695 946..990 +
1691683681.098922-UTR-L-elsbetiae_contig5695:945..9901691683681.098922-UTR-L-elsbetiae_contig5695:945..990Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5695 946..990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816607.5431173-CDS-L-elsbetiae_contig5695:990..14071622816607.5431173-CDS-L-elsbetiae_contig5695:990..1407Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5695 991..1407 +
1691683681.1100242-CDS-L-elsbetiae_contig5695:990..14071691683681.1100242-CDS-L-elsbetiae_contig5695:990..1407Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5695 991..1407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5695.14070.1prot_L-elsbetiae_contig5695.14070.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5695 991..1407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5695.14070.1

>prot_L-elsbetiae_contig5695.14070.1 ID=prot_L-elsbetiae_contig5695.14070.1|Name=mRNA_L-elsbetiae_contig5695.14070.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MLLLILAGLVAIGKDGSVPSTEMLRTDRGVICREKTRKCSQMLVGSLAAH
LHCEDRNGPGLDPSVLTAVRSFSSVPVGGPAMEFIDLFRSCESCSTQSWL
LRTLSGSLCLGKPVALKKSRKTERYGTREAEKHSPEIP*
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mRNA from alignment at L-elsbetiae_contig5695:946..1407+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5695.14070.1 ID=mRNA_L-elsbetiae_contig5695.14070.1|Name=mRNA_L-elsbetiae_contig5695.14070.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig5695:946..1407+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGGGAGGGTCTGAAATTTCGCACCTGCAAAACATGGCGTGTTAATGCT
TCTTTTAATCCTGGCTGGCCTCGTGGCCATTGGAAAGGATGGGTCTGTCC
CAAGTACTGAAATGCTAAGAACAGACAGAGGTGTCATTTGTCGAGAGAAA
ACGCGAAAATGTTCCCAAATGTTGGTTGGCAGCTTGGCAGCACACCTCCA
CTGTGAGGATCGGAACGGTCCTGGCCTTGATCCGTCCGTCTTGACGGCGG
TGCGTAGCTTCAGTAGTGTGCCGGTTGGGGGGCCCGCAATGGAATTTATC
GACCTTTTTCGGAGCTGCGAAAGCTGTAGCACACAGTCTTGGCTTCTGAG
GACACTATCTGGTAGCTTATGTCTAGGCAAACCAGTAGCGCTGAAGAAAT
CAAGGAAAACGGAGCGGTATGGGACTCGAGAGGCAGAAAAACATTCTCCA
GAGATACCCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5695:946..1407+

>mRNA_L-elsbetiae_contig5695.14070.1 ID=mRNA_L-elsbetiae_contig5695.14070.1|Name=mRNA_L-elsbetiae_contig5695.14070.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig5695:946..1407+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTCTTTTAATCCTGGCTGGCCTCGTGGCCATTGGAAAGGATGGGTC
TGTCCCAAGTACTGAAATGCTAAGAACAGACAGAGGTGTCATTTGTCGAG
AGAAAACGCGAAAATGTTCCCAAATGTTGGTTGGCAGCTTGGCAGCACAC
CTCCACTGTGAGGATCGGAACGGTCCTGGCCTTGATCCGTCCGTCTTGAC
GGCGGTGCGTAGCTTCAGTAGTGTGCCGGTTGGGGGGCCCGCAATGGAAT
TTATCGACCTTTTTCGGAGCTGCGAAAGCTGTAGCACACAGTCTTGGCTT
CTGAGGACACTATCTGGTAGCTTATGTCTAGGCAAACCAGTAGCGCTGAA
GAAATCAAGGAAAACGGAGCGGTATGGGACTCGAGAGGCAGAAAAACATT
CTCCAGAGATACCCTGAATGCTTCTTTTAATCCTGGCTGGCCTCGTGGCC
ATTGGAAAGGATGGGTCTGTCCCAAGTACTGAAATGCTAAGAACAGACAG
AGGTGTCATTTGTCGAGAGAAAACGCGAAAATGTTCCCAAATGTTGGTTG
GCAGCTTGGCAGCACACCTCCACTGTGAGGATCGGAACGGTCCTGGCCTT
GATCCGTCCGTCTTGACGGCGGTGCGTAGCTTCAGTAGTGTGCCGGTTGG
GGGGCCCGCAATGGAATTTATCGACCTTTTTCGGAGCTGCGAAAGCTGTA
GCACACAGTCTTGGCTTCTGAGGACACTATCTGGTAGCTTATGTCTAGGC
AAACCAGTAGCGCTGAAGAAATCAAGGAAAACGGAGCGGTATGGGACTCG
AGAGGCAGAAAAACATTCTCCAGAGATACCCTGA
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