mRNA_L-elsbetiae_contig569.14059.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig569.14059.1
Unique NamemRNA_L-elsbetiae_contig569.14059.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig569.14059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig569contigL-elsbetiae_contig569:15771..17422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size264
Cds size261
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig569.14059.1prot_L-elsbetiae_contig569.14059.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig569 15773..17422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816606.6619365-CDS-L-elsbetiae_contig569:15772..158531622816606.6619365-CDS-L-elsbetiae_contig569:15772..15853Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 15773..15853 -
1691683680.5267353-CDS-L-elsbetiae_contig569:15772..158531691683680.5267353-CDS-L-elsbetiae_contig569:15772..15853Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 15773..15853 -
1622816606.675281-CDS-L-elsbetiae_contig569:16455..165771622816606.675281-CDS-L-elsbetiae_contig569:16455..16577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 16456..16577 -
1691683680.544715-CDS-L-elsbetiae_contig569:16455..165771691683680.544715-CDS-L-elsbetiae_contig569:16455..16577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 16456..16577 -
1622816606.6870177-CDS-L-elsbetiae_contig569:17364..174221622816606.6870177-CDS-L-elsbetiae_contig569:17364..17422Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 17365..17422 -
1691683680.5604596-CDS-L-elsbetiae_contig569:17364..174221691683680.5604596-CDS-L-elsbetiae_contig569:17364..17422Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 17365..17422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig569.14059.1

>prot_L-elsbetiae_contig569.14059.1 ID=prot_L-elsbetiae_contig569.14059.1|Name=mRNA_L-elsbetiae_contig569.14059.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
NVHTVGTIRAGDGRGAKHREERMEGRGDRARMWLHDSYHALDIALAVFAR
EKHSRLLLWSHQPSVRALPGSPKTIFPPVCQQRVTFP
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mRNA from alignment at L-elsbetiae_contig569:15771..17422-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig569.14059.1 ID=mRNA_L-elsbetiae_contig569.14059.1|Name=mRNA_L-elsbetiae_contig569.14059.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1652bp|location=Sequence derived from alignment at L-elsbetiae_contig569:15771..17422- (Laminarionema elsbetiae ELsaHSoW15)
AACGTTCACACTGTTGGCACCATACGGGCTGGTGATGGGCGAGGGGCCAA
GCACAGGGGTGAGGAGGTTGCTATATGTGGACGATTCTAATCTTAGCTTC
ATCATATATCTAGTGCACCACGTACCGCGAGAGCGCCCCATACATATCAG
CAAAAGGACCGCCTTCGCGAAGAATTCCTGTAATTCCTGTCTATCTCTTG
TCTATCAAGGAAATAATAGACAGGGGTTCCGTCACCCTAACCCTGACCCT
AACCCTAAACCGACCCCCCATTAGCCATTTCCATGTTTTATCCCATATGA
TTTCTTCGAAAAACCTACGAAGGCTACTGCAGCAAAAGGAGCAGTCTAGC
AGCTTATGTCGACACGGCTCTGGTTTCTGAAGTTTGCGTACCAACTACAT
ATCTACGCCTAGTCAAAAAATATTCACGGTCACCTCGTCATGTGGGAGTT
TTGCAACGCACAACCCCCTCAGGGCCACAAGGCCACAAGGATTAGATATG
GGGCCACTTTTTGGCTCCAAGTGATATGCCAAACTTTTCGACCCACTTTC
ACAACGCGACCCCAATCCTTCTCTGGAATCCTTACTGAATAACACCCAAT
GGTTTGGGGCCAATCAATAGGGATTTTAAAGTTGGGATCATCAGTCACAG
GGGACTCATGAGTAAGATCCAATAACATATTAATATCTGAAAAAACTAGA
AAAGTGTTGACGTCGTCAGGGGGTTAGACTATCTTGTAGGATATTGTGCA
AAGTTACATAGACTAGGCTTGTAGACCGCAATCTAACTACATTCTTCGTG
TGCTCCAACGGCATATCGCCTGCTATGTTTTCCCTCTCAAAGCAGAAGAA
CGTATGGAAGGAAGGGGCGATCGTGCTCGAATGTGGCTCCACGACAGCTA
TCATGCTTTGGATATTGCACTGGCGGTTTTCGCCAGGGAAAAACACTCGC
GCCTGTTGTTGTGGTCGGTGAGCGGAATGGCACGGGAGATTGGGTACATA
CATAGCAGAAAGGAAACGAGCAGTTGCAAAGCATTCCAAATTCGCTGCTG
CTGTTTGGTGAATCGGGAGTGAGCTCGTTCGTTGATGCACTCGAATGGTT
TGATGAACTTGGCGCTACCTACACGGATAGCTGCGTTCAGCGCCATCCTT
TTCCCATCCATGGGCAAGGGTTTATTTCTGAGGGGCAAAATGTACAACGT
TGGTAAGCACACCCTAATACCCGATATTGCACCCGTAGCCCTAAAACAGC
AATGCAATTTGTCCATAGGGTGTACGTGCCCCGTTTAACAACTCTCGTTG
ACAGGAGTCACCCTCACTTCCTACGGTTCACCATCGTTCACGGAATGCCC
ACGAAACGAGAGAGGTATAATCAAAATTGCTTGAAGAAAGCATGGGAGTT
TGCGGAGACGCCGCGGATAAAGGGTCTCCAGGTCTGCCCCAGAAACACTG
TCGGTTTCATTTCGTGGGGAAAATGGCCAGTATCAACACGTTACTCACGA
TATCACCACGACCGCAACCACCAATCCATGACGTCCGCGTCCGCTGCACT
ACAACGTTCGTTCGAGCAGCACCAACCCTCCGTCCGAGCTCTTCCGGGAT
CGCCGAAAACAATCTTCCCGCCAGTATGTCAACAGCGTGTTACTTTTCCT
AG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig569:15771..17422-

>mRNA_L-elsbetiae_contig569.14059.1 ID=mRNA_L-elsbetiae_contig569.14059.1|Name=mRNA_L-elsbetiae_contig569.14059.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig569:15771..17422- (Laminarionema elsbetiae ELsaHSoW15)
AACGTTCACACTGTTGGCACCATACGGGCTGGTGATGGGCGAGGGGCCAA
GCACAGGGAACGTTCACACTGTTGGCACCATACGGGCTGGTGATGGGCGA
GGGGCCAAGCACAGGGAAGAACGTATGGAAGGAAGGGGCGATCGTGCTCG
AATGTGGCTCCACGACAGCTATCATGCTTTGGATATTGCACTGGCGGTTT
TCGCCAGGGAAAAACACTCGCGCCTGTTGTTGTGGTCGAAGAACGTATGG
AAGGAAGGGGCGATCGTGCTCGAATGTGGCTCCACGACAGCTATCATGCT
TTGGATATTGCACTGGCGGTTTTCGCCAGGGAAAAACACTCGCGCCTGTT
GTTGTGGTCGCACCAACCCTCCGTCCGAGCTCTTCCGGGATCGCCGAAAA
CAATCTTCCCGCCAGTATGTCAACAGCGTGTTACTTTTCCTCACCAACCC
TCCGTCCGAGCTCTTCCGGGATCGCCGAAAACAATCTTCCCGCCAGTATG
TCAACAGCGTGTTACTTTTCCT
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