mRNA_L-elsbetiae_contig569.14058.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig569.14058.1
Unique NamemRNA_L-elsbetiae_contig569.14058.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig569.14058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig569contigL-elsbetiae_contig569:14901..15732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size277
Cds size276
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig569.14058.1prot_L-elsbetiae_contig569.14058.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig569 14901..15732 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816606.6087506-CDS-L-elsbetiae_contig569:14900..150621622816606.6087506-CDS-L-elsbetiae_contig569:14900..15062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 14901..15062 -
1691683680.4924417-CDS-L-elsbetiae_contig569:14900..150621691683680.4924417-CDS-L-elsbetiae_contig569:14900..15062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 14901..15062 -
1622816606.6206098-CDS-L-elsbetiae_contig569:15315..153721622816606.6206098-CDS-L-elsbetiae_contig569:15315..15372Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 15316..15372 -
1691683680.504477-CDS-L-elsbetiae_contig569:15315..153721691683680.504477-CDS-L-elsbetiae_contig569:15315..15372Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 15316..15372 -
1622816606.6311677-CDS-L-elsbetiae_contig569:15675..157321622816606.6311677-CDS-L-elsbetiae_contig569:15675..15732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 15676..15732 -
1691683680.5146441-CDS-L-elsbetiae_contig569:15675..157321691683680.5146441-CDS-L-elsbetiae_contig569:15675..15732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 15676..15732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig569.14058.1

>prot_L-elsbetiae_contig569.14058.1 ID=prot_L-elsbetiae_contig569.14058.1|Name=mRNA_L-elsbetiae_contig569.14058.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
SGEASLSNFLSLACFTSRAVGTSKAAVTSMIRDPILEEAFYRGVVFDRLL
GTGCQTMTHEAVLEAAGGSSVFFGGVHLLMHLIREGAQPSW*
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mRNA from alignment at L-elsbetiae_contig569:14901..15732-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig569.14058.1 ID=mRNA_L-elsbetiae_contig569.14058.1|Name=mRNA_L-elsbetiae_contig569.14058.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=832bp|location=Sequence derived from alignment at L-elsbetiae_contig569:14901..15732- (Laminarionema elsbetiae ELsaHSoW15)
TCTGGCGAAGCGTCGTTGTCCAACTTCCTTTCATTGGCTTGTTTTACGTC
GCGTGCGGTGAGAGCACTCTTTGAACCTGAGTTTGAGGTGAGAATGTAGG
CGAGACTGCTCCGGGCAAGTCCTATCGAAGACAGGAATGAATGCAGCGCA
AATAGCAGTTGGTTCAGGGGGTAGTACAATTCTCCATCTGGGGCTGGGGG
TTGCGCAAAACGTCTGAAACCCCTCTTGGTCTTGGCTGCTGAATCGCCTC
CATCGAGATACAATCCCCGCCCACCACATGTGCAAAATTTCCTCTCTCGA
CCAGAGGGCCGTTTATTTTTTTTGTTCGACACGATTCCAATGCTTTCTGT
GCTGGGCCAGGTGGGAACTTCTAAAGCCGCAGTTACCTCGATGATCAGAG
ACCCCATTCTGGAAGAGGTGAAGCCGCTTGAAGCCCTGCCCCAGGCCGAA
ACGTATTTCAACCTTTCATAATAATTGTTGAGAATATTTTGAAATGCATC
GTCGCTGAAAGTAAATGTCGTTCTCTAGGCTTGGAAGTCTGAAGGTCTAG
CCGATGCTTCTTCGAAGTATCCTGTGTACCAGGAATAAAATACAGCAAAT
CCTCCGTCTCTTTTTTGCCAAGTTTTGCTTTGCCACCCATCTTGTACGTG
CCAACCACTTGCGCCTTCAGGCGTTTTACCGTGGTGTGGTGTTCGACCGT
CTCCTTGGGACGGGTTGCCAGACGATGACACATGAGGCCGTATTGGAGGC
GGCTGGTGGGTCTTCTGTCTTCTTCGGCGGGGTGCACCTACTTATGCACC
TTATACGAGAAGGAGCACAGCCTTCGTGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig569:14901..15732-

>mRNA_L-elsbetiae_contig569.14058.1 ID=mRNA_L-elsbetiae_contig569.14058.1|Name=mRNA_L-elsbetiae_contig569.14058.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig569:14901..15732- (Laminarionema elsbetiae ELsaHSoW15)
TCTGGCGAAGCGTCGTTGTCCAACTTCCTTTCATTGGCTTGTTTTACGTC
GCGTGCGTCTGGCGAAGCGTCGTTGTCCAACTTCCTTTCATTGGCTTGTT
TTACGTCGCGTGCGGTGGGAACTTCTAAAGCCGCAGTTACCTCGATGATC
AGAGACCCCATTCTGGAAGAGGTGGGAACTTCTAAAGCCGCAGTTACCTC
GATGATCAGAGACCCCATTCTGGAAGAGGCGTTTTACCGTGGTGTGGTGT
TCGACCGTCTCCTTGGGACGGGTTGCCAGACGATGACACATGAGGCCGTA
TTGGAGGCGGCTGGTGGGTCTTCTGTCTTCTTCGGCGGGGTGCACCTACT
TATGCACCTTATACGAGAAGGAGCACAGCCTTCGTGGTAGGCGTTTTACC
GTGGTGTGGTGTTCGACCGTCTCCTTGGGACGGGTTGCCAGACGATGACA
CATGAGGCCGTATTGGAGGCGGCTGGTGGGTCTTCTGTCTTCTTCGGCGG
GGTGCACCTACTTATGCACCTTATACGAGAAGGAGCACAGCCTTCGTGGT
AG
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