mRNA_L-elsbetiae_contig5688.14055.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5688.14055.1
Unique NamemRNA_L-elsbetiae_contig5688.14055.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5688.14055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5688contigL-elsbetiae_contig5688:5932..6502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size571
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5688.14055.1prot_L-elsbetiae_contig5688.14055.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5688 5952..6296 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816606.374848-UTR-L-elsbetiae_contig5688:5931..59511622816606.374848-UTR-L-elsbetiae_contig5688:5931..5951Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5688 5932..5951 +
1691683680.316389-UTR-L-elsbetiae_contig5688:5931..59511691683680.316389-UTR-L-elsbetiae_contig5688:5931..5951Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5688 5932..5951 +
1622816606.3966408-UTR-L-elsbetiae_contig5688:6296..65021622816606.3966408-UTR-L-elsbetiae_contig5688:6296..6502Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5688 6297..6502 +
1691683680.3379188-UTR-L-elsbetiae_contig5688:6296..65021691683680.3379188-UTR-L-elsbetiae_contig5688:6296..6502Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5688 6297..6502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816606.3858373-CDS-L-elsbetiae_contig5688:5951..62961622816606.3858373-CDS-L-elsbetiae_contig5688:5951..6296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5688 5952..6296 +
1691683680.3260787-CDS-L-elsbetiae_contig5688:5951..62961691683680.3260787-CDS-L-elsbetiae_contig5688:5951..6296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5688 5952..6296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5688.14055.1

>prot_L-elsbetiae_contig5688.14055.1 ID=prot_L-elsbetiae_contig5688.14055.1|Name=mRNA_L-elsbetiae_contig5688.14055.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MELDHAAAATSCRSAKSCLNRRSASSRFLPSSLKTCLASAQAMTTTTDQP
LLLPAGESCRKNRPPPAGCRNPQLPRIGSYHRRLKGDMLEEQSIFRRPAL
HLRYRDCQGSIRGV*
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mRNA from alignment at L-elsbetiae_contig5688:5932..6502+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5688.14055.1 ID=mRNA_L-elsbetiae_contig5688.14055.1|Name=mRNA_L-elsbetiae_contig5688.14055.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=571bp|location=Sequence derived from alignment at L-elsbetiae_contig5688:5932..6502+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTGCTGCAGGTGTGACGAATGGAGCTGGATCATGCTGCTGCGGCGACA
TCATGTCGTTCGGCGAAGAGCTGCTTAAATCGCCGCTCGGCGTCGTCACG
TTTTCTCCCGTCGTCGTTGAAAACATGTTTGGCGTCAGCGCAGGCGATGA
CGACGACGACGGATCAGCCCCTCCTCCTTCCGGCGGGAGAGAGTTGTAGG
AAAAACAGGCCGCCGCCGGCGGGCTGCAGGAACCCGCAGTTGCCTCGGAT
TGGGTCGTATCATCGCCGCTTGAAGGGCGACATGTTGGAGGAACAATCAA
TTTTTCGACGCCCTGCGCTTCACCTCCGCTATCGTGATTGCCAGGGCTCA
ATACGGGGGGTGTAATCTGTGGCGCCTTGTTGTTGGCCATAGTCGCAGAA
GGAGCCGATTGCGACACGTCGCAGAAGCTGTCAAGTCCCTCTGAGGCTGT
GATGATGGCGCTGTCTTCACCGATGCTGCTAGGTGTCTCTCTCGCGCTGC
TACTACTGCTGCTGTCTACTGCTTCTTCGGTATCATGGTCCATGAAGGAC
TTGACCGAAGCCACCGGGTAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5688:5932..6502+

>mRNA_L-elsbetiae_contig5688.14055.1 ID=mRNA_L-elsbetiae_contig5688.14055.1|Name=mRNA_L-elsbetiae_contig5688.14055.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig5688:5932..6502+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCTGGATCATGCTGCTGCGGCGACATCATGTCGTTCGGCGAAGAG
CTGCTTAAATCGCCGCTCGGCGTCGTCACGTTTTCTCCCGTCGTCGTTGA
AAACATGTTTGGCGTCAGCGCAGGCGATGACGACGACGACGGATCAGCCC
CTCCTCCTTCCGGCGGGAGAGAGTTGTAGGAAAAACAGGCCGCCGCCGGC
GGGCTGCAGGAACCCGCAGTTGCCTCGGATTGGGTCGTATCATCGCCGCT
TGAAGGGCGACATGTTGGAGGAACAATCAATTTTTCGACGCCCTGCGCTT
CACCTCCGCTATCGTGATTGCCAGGGCTCAATACGGGGGGTGTAAATGGA
GCTGGATCATGCTGCTGCGGCGACATCATGTCGTTCGGCGAAGAGCTGCT
TAAATCGCCGCTCGGCGTCGTCACGTTTTCTCCCGTCGTCGTTGAAAACA
TGTTTGGCGTCAGCGCAGGCGATGACGACGACGACGGATCAGCCCCTCCT
CCTTCCGGCGGGAGAGAGTTGTAGGAAAAACAGGCCGCCGCCGGCGGGCT
GCAGGAACCCGCAGTTGCCTCGGATTGGGTCGTATCATCGCCGCTTGAAG
GGCGACATGTTGGAGGAACAATCAATTTTTCGACGCCCTGCGCTTCACCT
CCGCTATCGTGATTGCCAGGGCTCAATACGGGGGGTGTAA
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