mRNA_L-elsbetiae_contig5688.14054.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5688.14054.1 vs. uniprot
Match: A0A6H5J997_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J997_9PHAE) HSP 1 Score: 236 bits (603), Expect = 5.400e-66 Identity = 120/138 (86.96%), Postives = 129/138 (93.48%), Query Frame = 1 Query: 571 ADGEAVQN-AYNDIGLVVTRTKELEKIMRDLFQATGNGLNELLTSLKTERRIDPRTQQRIRSIATMRNKLVHSVDANNLTISNTFGASARKAFKAMCDDLEVSLRDCATKVVEEPFEQASRPANNFRLGNHPAFRGAG 981 ADG+ VQN AYNDIGLVVTRTKELEKIMRD F ATGNGLNELL+SL+T+RRIDPRTQQRIRSIA MRNKLVHSVDANNLT+SNTFGASARKAFK MCDDLE+SLR+CA KVVEEPFEQA+RPA+ FRLGNHPAFRG G Sbjct: 537 ADGDVVQNNAYNDIGLVVTRTKELEKIMRDSFHATGNGLNELLSSLRTDRRIDPRTQQRIRSIAAMRNKLVHSVDANNLTMSNTFGASARKAFKMMCDDLELSLRECAAKVVEEPFEQAARPADAFRLGNHPAFRGIG 674
BLAST of mRNA_L-elsbetiae_contig5688.14054.1 vs. uniprot
Match: D7FRG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG9_ECTSI) HSP 1 Score: 156 bits (394), Expect = 1.970e-43 Identity = 82/91 (90.11%), Postives = 87/91 (95.60%), Query Frame = 1 Query: 571 ADGEAVQN-AYNDIGLVVTRTKELEKIMRDLFQATGNGLNELLTSLKTERRIDPRTQQRIRSIATMRNKLVHSVDANNLTISNTFGASARK 840 ADG+AVQN AYNDIGLVVTRTKELEKIMRD F ATGNGLNELL+SL+T+RRIDPRTQQRIRSIA MRNKLVHSVDANNLT+SNTFGASARK Sbjct: 44 ADGDAVQNNAYNDIGLVVTRTKELEKIMRDSFHATGNGLNELLSSLRTDRRIDPRTQQRIRSIAAMRNKLVHSVDANNLTMSNTFGASARK 134
BLAST of mRNA_L-elsbetiae_contig5688.14054.1 vs. uniprot
Match: D7FRG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG8_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 3.110e-14 Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1 Query: 853 MCDDLEVSLRDCATKVVEEPFEQASRPANNFRLGNHPAFRGAG 981 MCDDLE+ LR+CA KVVEEPFEQA+RPA+ FRLGNHPAFRG G Sbjct: 1 MCDDLELGLRECAAKVVEEPFEQAARPADAFRLGNHPAFRGIG 43
BLAST of mRNA_L-elsbetiae_contig5688.14054.1 vs. uniprot
Match: A0A2N8ZHG5_9VIBR (Uncharacterized protein n=1 Tax=Vibrio tapetis subsp. tapetis TaxID=1671868 RepID=A0A2N8ZHG5_9VIBR) HSP 1 Score: 63.9 bits (154), Expect = 5.330e-9 Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = 1 Query: 601 NDIGLVVTRTKELEKIMRDLFQATGNGLNELLTSLKTERRIDPRTQQRIRSIATMRNKLVHSVDANNLTISNTFGASARKAFKAMCDDLEVSL 879 +DI VVTRT+++EK++R + A+G GL++L+TS TE R+ +++R +AT+RNK+VH D F RK F +CD+ E L Sbjct: 2 SDIEKVVTRTRQIEKLLRVQYHASGKGLHQLITS--TEERLPHDVIKKLRYVATIRNKIVHEED---------FVLENRKEFLKVCDECEKEL 83
BLAST of mRNA_L-elsbetiae_contig5688.14054.1 vs. uniprot
Match: A0A4V0I0M2_9BACT (Uncharacterized protein n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A4V0I0M2_9BACT) HSP 1 Score: 61.6 bits (148), Expect = 3.030e-8 Identity = 39/100 (39.00%), Postives = 54/100 (54.00%), Query Frame = 1 Query: 601 NDIGLVVTRTKELEKIMRDLFQATGNGLNELLTSLKTERRIDPRTQQRIRSIATMRNKLVHSVDANNLTISNTFGASARKAFKAMCDDLEVSLRDCATKV 900 +DI L VTRTK LE ++ ATG GL+E ++S++ R+ P +R+R +AT+RNK+VH SN R F CD+ E LR T V Sbjct: 2 SDIELAVTRTKALESLLEQALGATGKGLHEKVSSVQD--RLAPALVKRMRFVATVRNKIVHE--------SNYQQIDDRTGFIRACDEAEAELRSLLTPV 91
BLAST of mRNA_L-elsbetiae_contig5688.14054.1 vs. uniprot
Match: A0A0F4NEV0_9VIBR (Uncharacterized protein n=1 Tax=Vibrio galatheae TaxID=579748 RepID=A0A0F4NEV0_9VIBR) HSP 1 Score: 60.1 bits (144), Expect = 1.220e-7 Identity = 34/101 (33.66%), Postives = 60/101 (59.41%), Query Frame = 1 Query: 601 NDIGLVVTRTKELEKIMRDLFQATGNGLNELLTSLKTERRIDPRTQQRIRSIATMRNKLVHSVDANNLTISNTFGASARKAFKAMCDDLEVSLRDCATKVV 903 +DI VVTRT+++E+++R + A G G+++L+TS E R+ ++R IAT+RNK+VH D F +R+ F ++CD+ E L +++ + Sbjct: 2 SDIEKVVTRTRKIERLLRTQYHANGKGMHQLITSC--EERLPHDVIDKLRYIATIRNKVVHEDD---------FKLDSRRDFLSVCDECEKELTPRSSRFI 91
BLAST of mRNA_L-elsbetiae_contig5688.14054.1 vs. uniprot
Match: A0A142X7P1_9BACT (Uncharacterized protein n=3 Tax=Gemmata TaxID=113 RepID=A0A142X7P1_9BACT) HSP 1 Score: 59.7 bits (143), Expect = 1.450e-7 Identity = 35/97 (36.08%), Postives = 54/97 (55.67%), Query Frame = 1 Query: 601 NDIGLVVTRTKELEKIMRDLFQATGNGLNELLTSLKTERRIDPRTQQRIRSIATMRNKLVHSVDANNLTISNTFGASARKAFKAMCDDLEVSLRDCA 891 +DI L +TRTK LE ++ F ATG GL++ +TS++ R+ ++IR +AT+RNK+VH D ++ R + CD+ E LR A Sbjct: 2 SDIELAITRTKALEALLEQAFNATGKGLHDKVTSVQN--RLPQPLVRKIRFVATVRNKIVHESDYKHI--------DDRDGYIRACDEAEAELRALA 88
BLAST of mRNA_L-elsbetiae_contig5688.14054.1 vs. uniprot
Match: A0A7Y4AKQ5_9VIBR (DUF4145 domain-containing protein n=2 Tax=Vibrio TaxID=662 RepID=A0A7Y4AKQ5_9VIBR) HSP 1 Score: 53.5 bits (127), Expect = 2.600e-5 Identity = 37/100 (37.00%), Postives = 54/100 (54.00%), Query Frame = 1 Query: 604 DIGLVVTRTKELEKIMRDLFQATGNGLNELLTSLKTERRIDPRTQQRIRSIATMRNKLVHSVDANNLTISNTFGASARKAFKAMCDDLEVSLRDCATKVV 903 DI VVTRT+ +EK++R + A G GL+EL+TS E R+ ++R IAT RNK+V D + L + F MCDD E L +++ + Sbjct: 3 DIEQVVTRTRNIEKLLRLQYHAEGEGLHELITSC--EERLPHDVVSKLRYIATCRNKVVKD-DKSEL--------EDQAKFTLMCDDCEKELTPRSSRFI 91 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5688.14054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5688.14054.1 >prot_L-elsbetiae_contig5688.14054.1 ID=prot_L-elsbetiae_contig5688.14054.1|Name=mRNA_L-elsbetiae_contig5688.14054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=365bp MQQQQQQPPPVFGNHGGYQQQMPVFYGPSTPMQHGPRPPLPHGLVLGGGGback to top mRNA from alignment at L-elsbetiae_contig5688:768..5259- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5688.14054.1 ID=mRNA_L-elsbetiae_contig5688.14054.1|Name=mRNA_L-elsbetiae_contig5688.14054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4492bp|location=Sequence derived from alignment at L-elsbetiae_contig5688:768..5259- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5688:768..5259- >mRNA_L-elsbetiae_contig5688.14054.1 ID=mRNA_L-elsbetiae_contig5688.14054.1|Name=mRNA_L-elsbetiae_contig5688.14054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2190bp|location=Sequence derived from alignment at L-elsbetiae_contig5688:768..5259- (Laminarionema elsbetiae ELsaHSoW15)back to top |