mRNA_L-elsbetiae_contig5687.14053.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5687.14053.1
Unique NamemRNA_L-elsbetiae_contig5687.14053.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5687.14053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5687contigL-elsbetiae_contig5687:5493..6062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size570
Cds size570
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816606.3400342-CDS-L-elsbetiae_contig5687:5492..60621622816606.3400342-CDS-L-elsbetiae_contig5687:5492..6062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5687 5493..6062 +
1691683680.3061023-CDS-L-elsbetiae_contig5687:5492..60621691683680.3061023-CDS-L-elsbetiae_contig5687:5492..6062Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5687 5493..6062 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5687.14053.1prot_L-elsbetiae_contig5687.14053.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5687 5493..6062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5687.14053.1

>prot_L-elsbetiae_contig5687.14053.1 ID=prot_L-elsbetiae_contig5687.14053.1|Name=mRNA_L-elsbetiae_contig5687.14053.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=190bp
TKPTAERESSALDETPAVHLSWCAYTLHTASPSSSKLPQKAPICACELGR
LPFWNSIPPLIWHHRGSDLSVSHTHTPTKRKIRSQSGTDSACARVTLSCA
RSPRLHVEQWETVRCPRVFSPLACPGVQTRPSHSRSMYRGLLVSELGGTL
LGPTTSSSSSKRPPPPLPPPYSVPCAPKEGGAPPPLSPAG
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mRNA from alignment at L-elsbetiae_contig5687:5493..6062+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5687.14053.1 ID=mRNA_L-elsbetiae_contig5687.14053.1|Name=mRNA_L-elsbetiae_contig5687.14053.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig5687:5493..6062+ (Laminarionema elsbetiae ELsaHSoW15)
ACGAAACCGACAGCAGAACGAGAGAGCTCGGCTTTGGATGAGACCCCAGC
CGTACACCTCTCGTGGTGTGCATACACATTACACACCGCATCGCCGTCGT
CTTCGAAGCTACCCCAAAAGGCCCCCATCTGTGCCTGCGAGCTCGGGCGT
TTACCTTTCTGGAACTCGATTCCGCCCTTAATTTGGCACCACCGTGGAAG
TGATTTGAGCGTCTCGCACACACACACACCTACTAAAAGAAAAATACGCT
CCCAATCAGGCACCGATAGTGCGTGCGCCCGGGTCACACTGTCTTGCGCA
CGAAGCCCCCGCTTGCACGTTGAACAGTGGGAAACAGTCCGGTGCCCCCG
TGTCTTCTCCCCTCTAGCTTGCCCCGGTGTACAAACAAGGCCCTCTCATT
CTCGGTCCATGTACCGTGGTCTCTTGGTCTCGGAGCTAGGAGGGACACTC
CTGGGACCGACCACGTCCTCCTCCTCCTCAAAGCGTCCGCCGCCGCCACT
GCCACCGCCGTATAGCGTGCCTTGTGCCCCGAAAGAAGGCGGTGCCCCGC
CCCCTCTTTCTCCGGCCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5687:5493..6062+

>mRNA_L-elsbetiae_contig5687.14053.1 ID=mRNA_L-elsbetiae_contig5687.14053.1|Name=mRNA_L-elsbetiae_contig5687.14053.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1140bp|location=Sequence derived from alignment at L-elsbetiae_contig5687:5493..6062+ (Laminarionema elsbetiae ELsaHSoW15)
ACGAAACCGACAGCAGAACGAGAGAGCTCGGCTTTGGATGAGACCCCAGC
CGTACACCTCTCGTGGTGTGCATACACATTACACACCGCATCGCCGTCGT
CTTCGAAGCTACCCCAAAAGGCCCCCATCTGTGCCTGCGAGCTCGGGCGT
TTACCTTTCTGGAACTCGATTCCGCCCTTAATTTGGCACCACCGTGGAAG
TGATTTGAGCGTCTCGCACACACACACACCTACTAAAAGAAAAATACGCT
CCCAATCAGGCACCGATAGTGCGTGCGCCCGGGTCACACTGTCTTGCGCA
CGAAGCCCCCGCTTGCACGTTGAACAGTGGGAAACAGTCCGGTGCCCCCG
TGTCTTCTCCCCTCTAGCTTGCCCCGGTGTACAAACAAGGCCCTCTCATT
CTCGGTCCATGTACCGTGGTCTCTTGGTCTCGGAGCTAGGAGGGACACTC
CTGGGACCGACCACGTCCTCCTCCTCCTCAAAGCGTCCGCCGCCGCCACT
GCCACCGCCGTATAGCGTGCCTTGTGCCCCGAAAGAAGGCGGTGCCCCGC
CCCCTCTTTCTCCGGCCGGCACGAAACCGACAGCAGAACGAGAGAGCTCG
GCTTTGGATGAGACCCCAGCCGTACACCTCTCGTGGTGTGCATACACATT
ACACACCGCATCGCCGTCGTCTTCGAAGCTACCCCAAAAGGCCCCCATCT
GTGCCTGCGAGCTCGGGCGTTTACCTTTCTGGAACTCGATTCCGCCCTTA
ATTTGGCACCACCGTGGAAGTGATTTGAGCGTCTCGCACACACACACACC
TACTAAAAGAAAAATACGCTCCCAATCAGGCACCGATAGTGCGTGCGCCC
GGGTCACACTGTCTTGCGCACGAAGCCCCCGCTTGCACGTTGAACAGTGG
GAAACAGTCCGGTGCCCCCGTGTCTTCTCCCCTCTAGCTTGCCCCGGTGT
ACAAACAAGGCCCTCTCATTCTCGGTCCATGTACCGTGGTCTCTTGGTCT
CGGAGCTAGGAGGGACACTCCTGGGACCGACCACGTCCTCCTCCTCCTCA
AAGCGTCCGCCGCCGCCACTGCCACCGCCGTATAGCGTGCCTTGTGCCCC
GAAAGAAGGCGGTGCCCCGCCCCCTCTTTCTCCGGCCGGC
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