mRNA_L-elsbetiae_contig568.14042.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig568.14042.1
Unique NamemRNA_L-elsbetiae_contig568.14042.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig568.14042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig568contigL-elsbetiae_contig568:5575..6051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size478
Cds size435
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816605.0132966-CDS-L-elsbetiae_contig568:5574..60091622816605.0132966-CDS-L-elsbetiae_contig568:5574..6009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig568 5575..6009 +
1691683679.2994175-CDS-L-elsbetiae_contig568:5574..60091691683679.2994175-CDS-L-elsbetiae_contig568:5574..6009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig568 5575..6009 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816605.0254526-UTR-L-elsbetiae_contig568:6009..60511622816605.0254526-UTR-L-elsbetiae_contig568:6009..6051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig568 6010..6051 +
1691683679.3100243-UTR-L-elsbetiae_contig568:6009..60511691683679.3100243-UTR-L-elsbetiae_contig568:6009..6051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig568 6010..6051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig568.14042.1prot_L-elsbetiae_contig568.14042.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig568 5575..6009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig568.14042.1

>prot_L-elsbetiae_contig568.14042.1 ID=prot_L-elsbetiae_contig568.14042.1|Name=mRNA_L-elsbetiae_contig568.14042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
SRQTIIYHPYSGCWAGAIHNQCGKGTNGKERHGRDKTPALHSTIIYQLYL
AKTPATLVVPTTTWGESSSLVFRGTNSANVRRALVLFTAQERQPAWPRPR
WRLPPPPPPAYSRRTTSLGPPPPALGQDPSQYSYPTRPRPPPLP*
back to top

mRNA from alignment at L-elsbetiae_contig568:5575..6051+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig568.14042.1 ID=mRNA_L-elsbetiae_contig568.14042.1|Name=mRNA_L-elsbetiae_contig568.14042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=477bp|location=Sequence derived from alignment at L-elsbetiae_contig568:5575..6051+ (Laminarionema elsbetiae ELsaHSoW15)
TCCCGCCAAACCATCATTTACCACCCTTATTCTGGTTGTTGGGCGGGAGC
GATTCACAACCAATGCGGCAAAGGAACAAACGGAAAAGAAAGGCATGGCC
GCGACAAAACACCCGCTCTGCACTCGACAATTATTTACCAGCTGTACCTA
GCCAAAACGCCGGCGACGTTGGTGGTACCAACCACAACCTGGGGCGAATC
AAGCAGTCTTGTCTTTCGTGGGACAAACAGTGCTAATGTTCGCCGCGCTC
TCGTGTTGTTCACTGCCCAGGAACGCCAGCCTGCGTGGCCCCGTCCCCGT
TGGCGTCTGCCACCACCGCCACCACCGGCATACTCGCGCCGGACGACGTC
CCTCGGGCCTCCTCCTCCTGCTCTTGGACAGGATCCATCACAATATTCCT
ACCCGACCCGCCCCCGCCCCCCGCCATTGCCCTAGCCTTGCGTCGCGCCT
CGATCTCTCTATCGTGGGAACCCCTGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig568:5575..6051+

>mRNA_L-elsbetiae_contig568.14042.1 ID=mRNA_L-elsbetiae_contig568.14042.1|Name=mRNA_L-elsbetiae_contig568.14042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig568:5575..6051+ (Laminarionema elsbetiae ELsaHSoW15)
TCCCGCCAAACCATCATTTACCACCCTTATTCTGGTTGTTGGGCGGGAGC
GATTCACAACCAATGCGGCAAAGGAACAAACGGAAAAGAAAGGCATGGCC
GCGACAAAACACCCGCTCTGCACTCGACAATTATTTACCAGCTGTACCTA
GCCAAAACGCCGGCGACGTTGGTGGTACCAACCACAACCTGGGGCGAATC
AAGCAGTCTTGTCTTTCGTGGGACAAACAGTGCTAATGTTCGCCGCGCTC
TCGTGTTGTTCACTGCCCAGGAACGCCAGCCTGCGTGGCCCCGTCCCCGT
TGGCGTCTGCCACCACCGCCACCACCGGCATACTCGCGCCGGACGACGTC
CCTCGGGCCTCCTCCTCCTGCTCTTGGACAGGATCCATCACAATATTCCT
ACCCGACCCGCCCCCGCCCCCCGCCATTGCCCTAGTCCCGCCAAACCATC
ATTTACCACCCTTATTCTGGTTGTTGGGCGGGAGCGATTCACAACCAATG
CGGCAAAGGAACAAACGGAAAAGAAAGGCATGGCCGCGACAAAACACCCG
CTCTGCACTCGACAATTATTTACCAGCTGTACCTAGCCAAAACGCCGGCG
ACGTTGGTGGTACCAACCACAACCTGGGGCGAATCAAGCAGTCTTGTCTT
TCGTGGGACAAACAGTGCTAATGTTCGCCGCGCTCTCGTGTTGTTCACTG
CCCAGGAACGCCAGCCTGCGTGGCCCCGTCCCCGTTGGCGTCTGCCACCA
CCGCCACCACCGGCATACTCGCGCCGGACGACGTCCCTCGGGCCTCCTCC
TCCTGCTCTTGGACAGGATCCATCACAATATTCCTACCCGACCCGCCCCC
GCCCCCCGCCATTGCCCTAG
back to top