mRNA_L-elsbetiae_contig5677.14037.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5677.14037.1
Unique NamemRNA_L-elsbetiae_contig5677.14037.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5677.14037.1 vs. uniprot
Match: A0A6H5JC35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC35_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.910e-13
Identity = 33/61 (54.10%), Postives = 48/61 (78.69%), Query Frame = 3 
Query:  228 NKGRWTRKEHELFLRGLAQFGRDWEVISGLFKTRSSLQVRTHAQKYLRKMQQGLPFPELPY 410
            N GRWT++EH+ FL+GL   G++W++I+ + KTRS++QVRTH QKY +K+ +G  FPE PY
Sbjct:    6 NNGRWTKEEHDAFLQGLVLHGKNWDLIAPIVKTRSAVQVRTHGQKYFKKVDKGERFPEEPY 66
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BLAST of mRNA_L-elsbetiae_contig5677.14037.1 vs. uniprot
Match: G4ZZP8_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZZP8_PHYSP)

HSP 1 Score: 71.6 bits (174), Expect = 8.400e-13
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 3 
Query:  234 GRWTRKEHELFLRGLAQFGRDWEVISGLFKTRSSLQVRTHAQKYLRK 374
            GRWT++EHELFL GL +FG+ W+ IS L  TR+ +Q+RTHAQKYL+K
Sbjct:   19 GRWTKREHELFLEGLQRFGKSWKKISSLVHTRTLVQIRTHAQKYLQK 65
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BLAST of mRNA_L-elsbetiae_contig5677.14037.1 vs. uniprot
Match: A0A6H5JAU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU8_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.360e-12
Identity = 32/64 (50.00%), Postives = 48/64 (75.00%), Query Frame = 3 
Query:  225 LNKGRWTRKEHELFLRGLAQFGRDWEVISGLFKTRSSLQVRTHAQKYLRKMQQGLPFPELPYRD 416
            + KGRWT +EH  FL GL ++G+DW+ I+ + KTR+++Q RTH QKY +++++G  FPE PY D
Sbjct:    1 MGKGRWTSQEHADFLAGLEKYGKDWKAIADVVKTRTTVQTRTHHQKYDKQVKRGRKFPEEPYED 64
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BLAST of mRNA_L-elsbetiae_contig5677.14037.1 vs. uniprot
Match: A0A1V9ZGA4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGA4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 5.910e-12
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3 
Query:  234 GRWTRKEHELFLRGLAQFGRDWEVISGLFKTRSSLQVRTHAQKYLRKMQQGLPF 395
            GRWT+KEHELFL GL ++G+ W+ I+ L  TR+ +Q+RTHAQKYL+K  +  PF
Sbjct:   81 GRWTKKEHELFLEGLRRYGKSWKHIANLVVTRTLVQIRTHAQKYLQKQNKSKPF 134
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BLAST of mRNA_L-elsbetiae_contig5677.14037.1 vs. uniprot
Match: A0A0N7L7R3_PLAHL (Protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L7R3_PLAHL)

HSP 1 Score: 73.6 bits (179), Expect = 1.090e-11
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 3 
Query:  234 GRWTRKEHELFLRGLAQFGRDWEVISGLFKTRSSLQVRTHAQKYLRKMQQG 386
            GRWT++EHELFL GL +FG+ W+ IS L  TR+ +Q+RTHAQKYL+K  +G
Sbjct:  108 GRWTKREHELFLEGLQRFGKSWKKISSLVHTRTLVQIRTHAQKYLQKQSRG 158
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BLAST of mRNA_L-elsbetiae_contig5677.14037.1 vs. uniprot
Match: D0NK49_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NK49_PHYIT)

HSP 1 Score: 73.2 bits (178), Expect = 1.340e-11
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 3 
Query:  234 GRWTRKEHELFLRGLAQFGRDWEVISGLFKTRSSLQVRTHAQKYLRKMQQGLPFPE 401
            GRWT++EHELFL GL +FGR W+ IS L  TR+ +Q+RTHAQKYL+K  +    P+
Sbjct:  138 GRWTKREHELFLEGLQRFGRSWKKISSLVHTRTLVQIRTHAQKYLQKQSRAAIKPD 193
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BLAST of mRNA_L-elsbetiae_contig5677.14037.1 vs. uniprot
Match: A0A7S3PLT1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PLT1_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.430e-11
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 3 
Query:  225 LNKGRWTRKEHELFLRGLAQFGRDWEVISGLFKTRSSLQVRTHAQKYLRKM 377
            +N GRWTR+EH +FL GL  +G++W+ I+ L KTRS +Q+RTHAQKY +K+
Sbjct:   24 INTGRWTREEHNMFLHGLETYGKEWKKIADLIKTRSVVQIRTHAQKYFQKV 74
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BLAST of mRNA_L-elsbetiae_contig5677.14037.1 vs. uniprot
Match: A0A067D317_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D317_SAPPC)

HSP 1 Score: 72.8 bits (177), Expect = 1.580e-11
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 3 
Query:  195 GGGICTPVFRLNKGRWTRKEHELFLRGLAQFGRDWEVISGLFKTRSSLQVRTHAQKYLRKMQQGLP 392
            G G+ T       GRWT+KEHELFL GL ++G+ W+ IS L  TR+ +Q+RTHAQKYL+K  +  P
Sbjct:   82 GTGVETQT-----GRWTKKEHELFLEGLERYGKSWKHISNLVVTRTLVQIRTHAQKYLQKQNKASP 142
[Close]
BLAST of mRNA_L-elsbetiae_contig5677.14037.1 vs. uniprot
Match: A0A6H5JBL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL6_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.320e-11
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = 3 
Query:  147 PETFV*IN*KEVLN*FGGGICTPVFRLNKGRWTRKEHELFLRGLAQFGRD---WEVISGLF-KTRSSLQVRTHAQKYLRKMQQGLPFPE 401
            P T+  +N   V++  G    + +   NKGRWT+ EHE FL    Q G++   W+ IS +   TRS  QVRTHAQKY RK+ QGLPFP+
Sbjct:   27 PSTYTEVN---VIS-LGVLAASRILSRNKGRWTKDEHERFLCVAGQLGKNKESWKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPD 111
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BLAST of mRNA_L-elsbetiae_contig5677.14037.1 vs. uniprot
Match: D7G4J2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J2_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 3.320e-11
Identity = 31/60 (51.67%), Postives = 46/60 (76.67%), Query Frame = 3 
Query:  231 KGRWTRKEHELFLRGLAQFGRDWEVISGLFKTRSSLQVRTHAQKYLRKMQQGLPFPELPY 410
            KGRWT +EH  FL GL ++G+DW+ I+ + KTR+++Q RTH QKY +++++G  FPE PY
Sbjct:   49 KGRWTSQEHADFLVGLEKYGKDWKAIADVVKTRTTVQTRTHHQKYEKQVKRGRKFPEEPY 108
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5677.14037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JC35_9PHAE1.910e-1354.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
G4ZZP8_PHYSP8.400e-1363.83Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A6H5JAU8_9PHAE3.360e-1250.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1V9ZGA4_9STRA5.910e-1257.41Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A0N7L7R3_PLAHL1.090e-1160.78Protein n=1 Tax=Plasmopara halstedii TaxID=4781 Re... [more]
D0NK49_PHYIT1.340e-1157.14Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A7S3PLT1_9STRA1.430e-1156.86Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A067D317_SAPPC1.580e-1151.52Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A6H5JBL6_9PHAE2.320e-1146.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4J2_ECTSI3.320e-1151.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5677contigL-elsbetiae_contig5677:8400..9384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size790
Cds size414
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5677.14037.1prot_L-elsbetiae_contig5677.14037.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5677 8400..9010 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816604.5577724-CDS-L-elsbetiae_contig5677:8399..87831622816604.5577724-CDS-L-elsbetiae_contig5677:8399..8783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5677 8400..8783 -
1691683678.9888456-CDS-L-elsbetiae_contig5677:8399..87831691683678.9888456-CDS-L-elsbetiae_contig5677:8399..8783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5677 8400..8783 -
1622816604.6177275-CDS-L-elsbetiae_contig5677:8980..90101622816604.6177275-CDS-L-elsbetiae_contig5677:8980..9010Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5677 8981..9010 -
1691683679.0026007-CDS-L-elsbetiae_contig5677:8980..90101691683679.0026007-CDS-L-elsbetiae_contig5677:8980..9010Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5677 8981..9010 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816604.6340985-UTR-L-elsbetiae_contig5677:9010..93841622816604.6340985-UTR-L-elsbetiae_contig5677:9010..9384Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5677 9011..9384 -
1691683679.014669-UTR-L-elsbetiae_contig5677:9010..93841691683679.014669-UTR-L-elsbetiae_contig5677:9010..9384Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5677 9011..9384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5677.14037.1

>prot_L-elsbetiae_contig5677.14037.1 ID=prot_L-elsbetiae_contig5677.14037.1|Name=mRNA_L-elsbetiae_contig5677.14037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
MQQGLPFPELPYRDDDDEEEQEEEEEKKEDQDQEGQDEAITSGRGHPSVG
GAAAAAAAPTPLPSAHAASRYPPSFFPPAHAGALSPFLSPPPGPMPAFSL
GHGGEYTPVAAATPAAAAAAAPPFSDDAFLHGGGFGVP
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mRNA from alignment at L-elsbetiae_contig5677:8400..9384-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5677.14037.1 ID=mRNA_L-elsbetiae_contig5677.14037.1|Name=mRNA_L-elsbetiae_contig5677.14037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=985bp|location=Sequence derived from alignment at L-elsbetiae_contig5677:8400..9384- (Laminarionema elsbetiae ELsaHSoW15)
AGAACCTCGAGTGTGTGATGTTGTTCATGGGCTCGATCCTTATTACTGCG
GCCGCGTGTGATGGAGTTGTTGTGAGTGTGGACTTGAGGAATCCATACAG
TACATAGTCTAGTGATGAAATATTGGTCCGGCTGAGTAGAAAAACACCCG
AGACATTTGTATAAATCAATTAAAAGGAGGTTCTTAACTAATTTGGCGGT
GGCATCTGTACACCGGTATTTAGGCTCAACAAGGGCCGATGGACCAGGAA
GGAGCACGAGCTCTTCCTCCGAGGGCTGGCGCAGTTTGGGAGGGACTGGG
AGGTGATCTCAGGGCTGTTCAAGACCCGCTCGTCGCTCCAAGTCCGCACC
CACGCCCAGAAGTACTTGCGCAAAATGCAGCAGGGGCTACCGTTCCCCGA
ACTTGTGAGCAATTTTCCTTGGTATTTATTTTAGCCCGTTTTGTTTTGAG
TGTGCGCTCTGGTTTGTGACAGACAGCAGGCGCCGACGGTTTGCTCGTTC
CAAGCGTTTGCCACTGCTGCCGCCTGAGAGGGCTCGCCCCGTCTTGCCGG
CACCGACGGGACCCCCACAACCTCCAACCCTGCGCTTGTTGGTTGAAACA
GCCGTATCGCGACGACGACGATGAGGAAGAGCAGGAAGAGGAGGAGGAAA
AAAAAGAAGACCAAGACCAAGAAGGCCAAGACGAAGCAATAACATCAGGG
CGTGGCCACCCCTCTGTTGGAGGGGCGGCGGCGGCAGCAGCGGCGCCCAC
GCCGCTCCCGTCCGCCCACGCCGCCTCGCGGTACCCGCCCTCGTTCTTTC
CCCCCGCGCACGCCGGCGCTCTTTCCCCGTTCCTTTCGCCGCCCCCTGGG
CCAATGCCGGCCTTTTCTCTCGGTCATGGTGGTGAGTATACTCCGGTGGC
GGCGGCTACTCCGGCGGCGGCGGCGGCGGCGGCCCCGCCATTCAGTGACG
ACGCCTTTTTGCACGGTGGCGGTTTCGGGGTACCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5677:8400..9384-

>mRNA_L-elsbetiae_contig5677.14037.1 ID=mRNA_L-elsbetiae_contig5677.14037.1|Name=mRNA_L-elsbetiae_contig5677.14037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig5677:8400..9384- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCAGGGGCTACCGTTCCCCGAACTTATGCAGCAGGGGCTACCGTT
CCCCGAACTTCCGTATCGCGACGACGACGATGAGGAAGAGCAGGAAGAGG
AGGAGGAAAAAAAAGAAGACCAAGACCAAGAAGGCCAAGACGAAGCAATA
ACATCAGGGCGTGGCCACCCCTCTGTTGGAGGGGCGGCGGCGGCAGCAGC
GGCGCCCACGCCGCTCCCGTCCGCCCACGCCGCCTCGCGGTACCCGCCCT
CGTTCTTTCCCCCCGCGCACGCCGGCGCTCTTTCCCCGTTCCTTTCGCCG
CCCCCTGGGCCAATGCCGGCCTTTTCTCTCGGTCATGGTGGTGAGTATAC
TCCGGTGGCGGCGGCTACTCCGGCGGCGGCGGCGGCGGCGGCCCCGCCAT
TCAGTGACGACGCCTTTTTGCACGGTGGCGGTTTCGGGGTACCGCCGTAT
CGCGACGACGACGATGAGGAAGAGCAGGAAGAGGAGGAGGAAAAAAAAGA
AGACCAAGACCAAGAAGGCCAAGACGAAGCAATAACATCAGGGCGTGGCC
ACCCCTCTGTTGGAGGGGCGGCGGCGGCAGCAGCGGCGCCCACGCCGCTC
CCGTCCGCCCACGCCGCCTCGCGGTACCCGCCCTCGTTCTTTCCCCCCGC
GCACGCCGGCGCTCTTTCCCCGTTCCTTTCGCCGCCCCCTGGGCCAATGC
CGGCCTTTTCTCTCGGTCATGGTGGTGAGTATACTCCGGTGGCGGCGGCT
ACTCCGGCGGCGGCGGCGGCGGCGGCCCCGCCATTCAGTGACGACGCCTT
TTTGCACGGTGGCGGTTTCGGGGTACCG
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