mRNA_L-elsbetiae_contig5671.14031.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5671.14031.1
Unique NamemRNA_L-elsbetiae_contig5671.14031.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5671.14031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5671contigL-elsbetiae_contig5671:1856..2580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size725
Cds size723
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816603.9310694-CDS-L-elsbetiae_contig5671:1855..25781622816603.9310694-CDS-L-elsbetiae_contig5671:1855..2578Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5671 1856..2578 +
1691683678.5729408-CDS-L-elsbetiae_contig5671:1855..25781691683678.5729408-CDS-L-elsbetiae_contig5671:1855..2578Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5671 1856..2578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5671.14031.1prot_L-elsbetiae_contig5671.14031.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5671 1856..2578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5671.14031.1

>prot_L-elsbetiae_contig5671.14031.1 ID=prot_L-elsbetiae_contig5671.14031.1|Name=mRNA_L-elsbetiae_contig5671.14031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=241bp
TTTTTTWPRFSSGTADRARRAGAGWPRRAAAESTGTAAAAAATATATATP
LGRRGHVKYAFRVPGLQRSTPPRHNRATAAAAAATATATATATATATAFR
WPTKHGHGGRGSDVSIAGRRRSWDRRNDDVPAGWRGRRGADGAAESTHRC
PTNGNGRIVAATAGRVARAAGGALATTSRHVPGPRTTAAAAATTTGRSCA
DRDTAGLLSGDARCGRVPEYAQLGRCKLRPAAAAATTATAG
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mRNA from alignment at L-elsbetiae_contig5671:1856..2580+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5671.14031.1 ID=mRNA_L-elsbetiae_contig5671.14031.1|Name=mRNA_L-elsbetiae_contig5671.14031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=725bp|location=Sequence derived from alignment at L-elsbetiae_contig5671:1856..2580+ (Laminarionema elsbetiae ELsaHSoW15)
ACGACAACGACAACAACTTGGCCTCGCTTCTCCTCAGGCACTGCCGATCG
GGCTCGGAGGGCAGGCGCTGGTTGGCCTAGGCGGGCAGCAGCAGAATCAA
CAGGAACAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAGCAACACCT
CTTGGGCGGCGGGGGCACGTCAAGTATGCCTTCAGGGTTCCTGGACTCCA
GCGTAGTACCCCCCCCAGGCATAACCGCGCAACAGCAGCAGCAGCAGCAG
CAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCATTTCGC
TGGCCTACAAAGCATGGCCATGGGGGCAGGGGGAGCGATGTATCCATCGC
CGGTCGCCGTAGGTCCTGGGATCGGCGGAATGATGATGTACCCGCCGGGT
GGCGTGGGAGGCGTGGGGCGGATGGTGCCGCCGAATCAACCCACCGTTGC
CCAACCAATGGGAATGGTCGGATCGTGGCAGCAACCGCCGGTCGGGTGGC
CCGAGCAGCTGGTGGGGCCTTGGCAACAACAAGTCGCCATGTCCCAGGCC
CAAGGACTACAGCAGCAGCAGCAGCTACTACAACAGGTCGCTCCTGCGCC
GATCGGGATACCGCCGGGCTACTCTCCGGCGACGCTCGGTGCGGACGAGT
ACCAGAGTATGCTCAACTCGGTCGGTGCAAGCTTCGCCCTGCAGCAGCAG
CAGCAACAACGGCAACAGCAGGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5671:1856..2580+

>mRNA_L-elsbetiae_contig5671.14031.1 ID=mRNA_L-elsbetiae_contig5671.14031.1|Name=mRNA_L-elsbetiae_contig5671.14031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig5671:1856..2580+ (Laminarionema elsbetiae ELsaHSoW15)
ACGACAACGACAACAACTTGGCCTCGCTTCTCCTCAGGCACTGCCGATCG
GGCTCGGAGGGCAGGCGCTGGTTGGCCTAGGCGGGCAGCAGCAGAATCAA
CAGGAACAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAGCAACACCT
CTTGGGCGGCGGGGGCACGTCAAGTATGCCTTCAGGGTTCCTGGACTCCA
GCGTAGTACCCCCCCCAGGCATAACCGCGCAACAGCAGCAGCAGCAGCAG
CAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCATTTCGC
TGGCCTACAAAGCATGGCCATGGGGGCAGGGGGAGCGATGTATCCATCGC
CGGTCGCCGTAGGTCCTGGGATCGGCGGAATGATGATGTACCCGCCGGGT
GGCGTGGGAGGCGTGGGGCGGATGGTGCCGCCGAATCAACCCACCGTTGC
CCAACCAATGGGAATGGTCGGATCGTGGCAGCAACCGCCGGTCGGGTGGC
CCGAGCAGCTGGTGGGGCCTTGGCAACAACAAGTCGCCATGTCCCAGGCC
CAAGGACTACAGCAGCAGCAGCAGCTACTACAACAGGTCGCTCCTGCGCC
GATCGGGATACCGCCGGGCTACTCTCCGGCGACGCTCGGTGCGGACGAGT
ACCAGAGTATGCTCAACTCGGTCGGTGCAAGCTTCGCCCTGCAGCAGCAG
CAGCAACAACGGCAACAGCAGGGACGACAACGACAACAACTTGGCCTCGC
TTCTCCTCAGGCACTGCCGATCGGGCTCGGAGGGCAGGCGCTGGTTGGCC
TAGGCGGGCAGCAGCAGAATCAACAGGAACAGCAGCAGCAGCAGCAGCAA
CAGCAACAGCAACAGCAACACCTCTTGGGCGGCGGGGGCACGTCAAGTAT
GCCTTCAGGGTTCCTGGACTCCAGCGTAGTACCCCCCCCAGGCATAACCG
CGCAACAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAGCAACAGCAA
CAGCAACAGCAACAGCATTTCGCTGGCCTACAAAGCATGGCCATGGGGGC
AGGGGGAGCGATGTATCCATCGCCGGTCGCCGTAGGTCCTGGGATCGGCG
GAATGATGATGTACCCGCCGGGTGGCGTGGGAGGCGTGGGGCGGATGGTG
CCGCCGAATCAACCCACCGTTGCCCAACCAATGGGAATGGTCGGATCGTG
GCAGCAACCGCCGGTCGGGTGGCCCGAGCAGCTGGTGGGGCCTTGGCAAC
AACAAGTCGCCATGTCCCAGGCCCAAGGACTACAGCAGCAGCAGCAGCTA
CTACAACAGGTCGCTCCTGCGCCGATCGGGATACCGCCGGGCTACTCTCC
GGCGACGCTCGGTGCGGACGAGTACCAGAGTATGCTCAACTCGGTCGGTG
CAAGCTTCGCCCTGCAGCAGCAGCAGCAACAACGGCAACAGCAGGG
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