mRNA_L-elsbetiae_contig5666.14020.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5666.14020.1
Unique NamemRNA_L-elsbetiae_contig5666.14020.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5666.14020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5666contigL-elsbetiae_contig5666:2830..4976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size817
Cds size816
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5666.14020.1prot_L-elsbetiae_contig5666.14020.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5666 2831..4976 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816603.0176473-CDS-L-elsbetiae_contig5666:2830..33251622816603.0176473-CDS-L-elsbetiae_contig5666:2830..3325Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5666 2831..3325 -
1691683677.936564-CDS-L-elsbetiae_contig5666:2830..33251691683677.936564-CDS-L-elsbetiae_contig5666:2830..3325Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5666 2831..3325 -
1622816603.0336542-CDS-L-elsbetiae_contig5666:3739..38501622816603.0336542-CDS-L-elsbetiae_contig5666:3739..3850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5666 3740..3850 -
1691683677.9492216-CDS-L-elsbetiae_contig5666:3739..38501691683677.9492216-CDS-L-elsbetiae_contig5666:3739..3850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5666 3740..3850 -
1622816603.0458887-CDS-L-elsbetiae_contig5666:4411..45071622816603.0458887-CDS-L-elsbetiae_contig5666:4411..4507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5666 4412..4507 -
1691683677.961589-CDS-L-elsbetiae_contig5666:4411..45071691683677.961589-CDS-L-elsbetiae_contig5666:4411..4507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5666 4412..4507 -
1622816603.0625103-CDS-L-elsbetiae_contig5666:4862..49761622816603.0625103-CDS-L-elsbetiae_contig5666:4862..4976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5666 4863..4976 -
1691683677.9769127-CDS-L-elsbetiae_contig5666:4862..49761691683677.9769127-CDS-L-elsbetiae_contig5666:4862..4976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5666 4863..4976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5666.14020.1

>prot_L-elsbetiae_contig5666.14020.1 ID=prot_L-elsbetiae_contig5666.14020.1|Name=mRNA_L-elsbetiae_contig5666.14020.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=272bp
AVITSPGGRVDTKNLLFVADPGVRVVFAASTVMLSRSQELRQDGLAILWG
SGAFDFEVTGELPGNAAGSMTDEYGLLDISEDGVVHSAQQILFTELAIIA
SRPSAIEAPLLDQPGFMLPNDEYLQQALAATHARLAAIPEPVNTPPPWTA
GTAEQAGAVLPNDPYLLRALDATHARLSGDLDQTAGTAEQAGAVLPNDPY
LLRALDATHARLSDDLDQVSTIGGCEEEEPTIRSSSNISNTDDDSTEARP
VSSTEGEERQLFPNTWTRRNGR
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mRNA from alignment at L-elsbetiae_contig5666:2830..4976-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5666.14020.1 ID=mRNA_L-elsbetiae_contig5666.14020.1|Name=mRNA_L-elsbetiae_contig5666.14020.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2147bp|location=Sequence derived from alignment at L-elsbetiae_contig5666:2830..4976- (Laminarionema elsbetiae ELsaHSoW15)
GCCGTAATCACCTCCCCAGGCGGCCGAGTCGACACGAAGAACCTCCTCTT
CGTCGCTGACCCTGGTGTTCGAGTTGTCTTTGCAGCCTCAACTGTGATGT
TGTCGCGCAGCCAGGCGAGTCATGTAGGCCGTAGGCTTGTGATTCCACGT
TGCGACGAGAGGAGACGTTACATAGAGAGTATGTAACGTGGGGCGCGTTG
CTGCTGTTTTCCTCTCAGGGCTGCTAGTTAAAGACGCGGCAGCAGCAGGT
CAATACATAGCCCTGACCCATCGTCAATCGCGTGATACATACAACGGAAG
ACGCTCTCCCGTCGCGCTCCTTCCAGCTGCCGACACAAGTCTCGAACGGT
CACCGTGGCAGCTCCTTGCTGCAAAATATTGCGCACACATCGTTTGCCAC
ACCAATCGTAGTAAGCGAACGGCCTTTATTTTACTAAACGACATCGCGCT
CGCGTCTGGCCTTCTTTAGGAGCTTCGACAGGATGGCCTCGCGATCTTGT
GGGGGAGCGGCGCCTTCGACTTCGAAGTGACGGGAGAGCTCCCTGGCAAC
GCCGCCGGGTCCATGGTGAGATAAATCCTTATCCTTGTTCAGGGGGGAGC
TCAGCCGAGATAGATTCAAGATAAATTTGTCGCGTAGTATTCTGTCTGTT
CCTTTGGATCACATCAATCAACCAATTGCATCTTGGTGGGTGAGTTTGTA
TGTATCATGACCGGCATCTCTCGTGCGCATTTTTGACTTATGTCCCACCG
GTGCGTATTCGAGGCCTAGCCCTCCCCCTGCCCTCTAACCTAGCACGTTA
CCAACAAGCCAGCGACCTTGGTCATGACCCGCCATGAACAGGTATGACGT
ACAGCTACCAGTCATGAACGTTCATGAACAGATATTCCACAAATAAACAC
GTGTTTTTCTGTTTGTTTTGCGTTTCCCTCTCTTCTTGCACACTAAGCCT
CTGTGCCGCTTGACCGAAGTTTCCTTTCGGTTTCGGTATGCCAGGAACAT
CTTCTAAACAACAAAACAGCACTAACAGCATCGCGCCGCCGTCACGAGCC
CCCACAGACTTAAAATCTGCTTTTGTTGCTGCTGTTGCTGCTGTTGCTGT
TGATGTTGCCGCACCCTGACCTACAGACAGACGAATACGGCCTGCTCGAC
ATCTCGGAAGATGGCGTCGTCCACTCTGCTCAGCAGATCCTCTTCACGGA
GTTGGCAATCATCGCTTCCCGTCCTTCCGCTATCGAGGTGCGCGTTGTTG
CCATTTATTTGCGGCGGAATTTTACTTGGGGTGGTCTTGGGTGGATATGC
ACTGTGAGGACTGAGTCAACATACAGCATTTGAGATAGATGTCGGTTTTG
AGCATAACTTGCCCAGGCAAACAAACAATTTCAAGCAACTTTATCAGGTG
GGTAATGGCTTGGCTTCCCAACACTGATGCATACCCACCGCTCGTTTCAA
CTCGCAATGCTGCGGGTGATTCTGGCCCAGACTCTTCAATTTCTTGTCTA
CTCACCCAAACAGTAAGATTTCTTCGAGTATTCTACGCGAAAAAAACGCG
CGACAGGTGTTAGCCGGTCGAATGCGCACGGGTTTCTGGGGCCAACTAGT
ATTGACCCCCTTCTTTGTCCCTTTCCTTCCCCTACCCATTCAATACTGCA
GGCCCCCCTTCTCGACCAGCCAGGGTTCATGCTTCCGAATGACGAATATC
TCCAGCAGGCCCTAGCGGCCACACATGCCCGTCTAGCCGCCATCCCCGAG
CCAGTCAACACCCCACCCCCGTGGACTGCTGGTACAGCCGAGCAGGCAGG
GGCAGTTCTACCTAATGACCCGTACCTCCTGCGAGCTCTGGATGCCACGC
ACGCACGCCTCTCCGGCGACCTCGACCAGACTGCTGGTACAGCCGAGCAG
GCAGGGGCAGTTCTACCTAATGACCCGTACCTCCTGCGAGCTCTGGACGC
CACGCACGCACGCCTCTCCGACGACCTCGACCAGGTCAGCACCATCGGCG
GCTGCGAAGAGGAAGAACCAACCATCCGCAGCAGCAGTAACATCAGCAAC
ACGGATGACGACTCAACGGAAGCCCGTCCTGTTTCTTCGACCGAGGGGGA
AGAGCGGCAGCTGTTCCCCAACACCTGGACACGCAGAAATGGGCGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5666:2830..4976-

>mRNA_L-elsbetiae_contig5666.14020.1 ID=mRNA_L-elsbetiae_contig5666.14020.1|Name=mRNA_L-elsbetiae_contig5666.14020.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1632bp|location=Sequence derived from alignment at L-elsbetiae_contig5666:2830..4976- (Laminarionema elsbetiae ELsaHSoW15)
GCCGTAATCACCTCCCCAGGCGGCCGAGTCGACACGAAGAACCTCCTCTT
CGTCGCTGACCCTGGTGTTCGAGTTGTCTTTGCAGCCTCAACTGTGATGT
TGTCGCGCAGCCAGGCCGTAATCACCTCCCCAGGCGGCCGAGTCGACACG
AAGAACCTCCTCTTCGTCGCTGACCCTGGTGTTCGAGTTGTCTTTGCAGC
CTCAACTGTGATGTTGTCGCGCAGCCAGGAGCTTCGACAGGATGGCCTCG
CGATCTTGTGGGGGAGCGGCGCCTTCGACTTCGAAGTGACGGGAGAGCTC
CCTGGCAACGCCGCCGGGTCCATGGAGCTTCGACAGGATGGCCTCGCGAT
CTTGTGGGGGAGCGGCGCCTTCGACTTCGAAGTGACGGGAGAGCTCCCTG
GCAACGCCGCCGGGTCCATGACAGACGAATACGGCCTGCTCGACATCTCG
GAAGATGGCGTCGTCCACTCTGCTCAGCAGATCCTCTTCACGGAGTTGGC
AATCATCGCTTCCCGTCCTTCCGCTATCGAGACAGACGAATACGGCCTGC
TCGACATCTCGGAAGATGGCGTCGTCCACTCTGCTCAGCAGATCCTCTTC
ACGGAGTTGGCAATCATCGCTTCCCGTCCTTCCGCTATCGAGGCCCCCCT
TCTCGACCAGCCAGGGTTCATGCTTCCGAATGACGAATATCTCCAGCAGG
CCCTAGCGGCCACACATGCCCGTCTAGCCGCCATCCCCGAGCCAGTCAAC
ACCCCACCCCCGTGGACTGCTGGTACAGCCGAGCAGGCAGGGGCAGTTCT
ACCTAATGACCCGTACCTCCTGCGAGCTCTGGATGCCACGCACGCACGCC
TCTCCGGCGACCTCGACCAGACTGCTGGTACAGCCGAGCAGGCAGGGGCA
GTTCTACCTAATGACCCGTACCTCCTGCGAGCTCTGGACGCCACGCACGC
ACGCCTCTCCGACGACCTCGACCAGGTCAGCACCATCGGCGGCTGCGAAG
AGGAAGAACCAACCATCCGCAGCAGCAGTAACATCAGCAACACGGATGAC
GACTCAACGGAAGCCCGTCCTGTTTCTTCGACCGAGGGGGAAGAGCGGCA
GCTGTTCCCCAACACCTGGACACGCAGAAATGGGCGCGCCCCCCTTCTCG
ACCAGCCAGGGTTCATGCTTCCGAATGACGAATATCTCCAGCAGGCCCTA
GCGGCCACACATGCCCGTCTAGCCGCCATCCCCGAGCCAGTCAACACCCC
ACCCCCGTGGACTGCTGGTACAGCCGAGCAGGCAGGGGCAGTTCTACCTA
ATGACCCGTACCTCCTGCGAGCTCTGGATGCCACGCACGCACGCCTCTCC
GGCGACCTCGACCAGACTGCTGGTACAGCCGAGCAGGCAGGGGCAGTTCT
ACCTAATGACCCGTACCTCCTGCGAGCTCTGGACGCCACGCACGCACGCC
TCTCCGACGACCTCGACCAGGTCAGCACCATCGGCGGCTGCGAAGAGGAA
GAACCAACCATCCGCAGCAGCAGTAACATCAGCAACACGGATGACGACTC
AACGGAAGCCCGTCCTGTTTCTTCGACCGAGGGGGAAGAGCGGCAGCTGT
TCCCCAACACCTGGACACGCAGAAATGGGCGC
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