mRNA_L-elsbetiae_contig5665.14018.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5665.14018.1
Unique NamemRNA_L-elsbetiae_contig5665.14018.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5665.14018.1 vs. uniprot
Match: D8LGE1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGE1_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 2.100e-12
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:  235 RLLKEGGVWINFGPLLFHWSDSSLRETDERFQ 330
            RLLKEGGVWINFGPLL+HWSDSSLR+TDERFQ
Sbjct:  260 RLLKEGGVWINFGPLLYHWSDSSLRKTDERFQ 291
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5665.14018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGE1_ECTSI2.100e-1293.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5665contigL-elsbetiae_contig5665:10392..10723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue1.9e-10
Seed eggNOG ortholog2880.D8LGE1
Preferred nameC9orf41
KEGG rclassRC00003,RC00333
KEGG koko:K19787
KEGG ReactionR02144
KEGG Pathwayko00340,map00340
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006518,GO:0006520,GO:0006547,GO:0006548,GO:0006575,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009056,GO:0009063,GO:0009987,GO:0016054,GO:0016740,GO:0016741,GO:0017144,GO:0019439,GO:0019752,GO:0030735,GO:0032259,GO:0034641,GO:0035498,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046483,GO:0046700,GO:0052803,GO:0052805,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
EggNOG free text desc.carnosine N-methyltransferase activity
EggNOG OGsKOG2798@1,KOG2798@2759
EC2.1.1.22
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size332
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816602.8765345-CDS-L-elsbetiae_contig5665:10391..107211622816602.8765345-CDS-L-elsbetiae_contig5665:10391..10721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5665 10392..10721 +
1691683677.859717-CDS-L-elsbetiae_contig5665:10391..107211691683677.859717-CDS-L-elsbetiae_contig5665:10391..10721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5665 10392..10721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5665.14018.1prot_L-elsbetiae_contig5665.14018.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5665 10392..10721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5665.14018.1

>prot_L-elsbetiae_contig5665.14018.1 ID=prot_L-elsbetiae_contig5665.14018.1|Name=mRNA_L-elsbetiae_contig5665.14018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
QERSETKRFLRSCVERSMPFDTYTYAKTKKNIGIFYLSCTCGENRVLTAS
VRCLLQRANSCTQENLVPPAIAPAFYCLRLLKEGGVWINFGPLLFHWSDS
SLRETDERFQ
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mRNA from alignment at L-elsbetiae_contig5665:10392..10723+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5665.14018.1 ID=mRNA_L-elsbetiae_contig5665.14018.1|Name=mRNA_L-elsbetiae_contig5665.14018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=332bp|location=Sequence derived from alignment at L-elsbetiae_contig5665:10392..10723+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGAGCGATCGGAAACCAAGAGATTTTTGCGGAGCTGCGTGGAACGCAG
CATGCCCTTTGATACGTATACTTATGCGAAAACTAAAAAAAACATTGGTA
TATTTTACCTATCGTGTACCTGTGGTGAGAACCGTGTTCTGACCGCCTCT
GTGCGTTGTCTCCTGCAACGAGCAAACTCGTGTACACAGGAAAACCTTGT
GCCACCCGCGATTGCCCCCGCTTTTTATTGTCTCAGACTTCTGAAGGAAG
GCGGGGTGTGGATTAATTTCGGCCCCCTACTATTCCACTGGTCCGATAGC
TCGCTCAGGGAGACGGACGAAAGATTTCAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5665:10392..10723+

>mRNA_L-elsbetiae_contig5665.14018.1 ID=mRNA_L-elsbetiae_contig5665.14018.1|Name=mRNA_L-elsbetiae_contig5665.14018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig5665:10392..10723+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGAGCGATCGGAAACCAAGAGATTTTTGCGGAGCTGCGTGGAACGCAG
CATGCCCTTTGATACGTATACTTATGCGAAAACTAAAAAAAACATTGGTA
TATTTTACCTATCGTGTACCTGTGGTGAGAACCGTGTTCTGACCGCCTCT
GTGCGTTGTCTCCTGCAACGAGCAAACTCGTGTACACAGGAAAACCTTGT
GCCACCCGCGATTGCCCCCGCTTTTTATTGTCTCAGACTTCTGAAGGAAG
GCGGGGTGTGGATTAATTTCGGCCCCCTACTATTCCACTGGTCCGATAGC
TCGCTCAGGGAGACGGACGAAAGATTTCAGCAGGAGCGATCGGAAACCAA
GAGATTTTTGCGGAGCTGCGTGGAACGCAGCATGCCCTTTGATACGTATA
CTTATGCGAAAACTAAAAAAAACATTGGTATATTTTACCTATCGTGTACC
TGTGGTGAGAACCGTGTTCTGACCGCCTCTGTGCGTTGTCTCCTGCAACG
AGCAAACTCGTGTACACAGGAAAACCTTGTGCCACCCGCGATTGCCCCCG
CTTTTTATTGTCTCAGACTTCTGAAGGAAGGCGGGGTGTGGATTAATTTC
GGCCCCCTACTATTCCACTGGTCCGATAGCTCGCTCAGGGAGACGGACGA
AAGATTTCAG
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