mRNA_L-elsbetiae_contig5653.14001.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5653.14001.1
Unique NamemRNA_L-elsbetiae_contig5653.14001.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5653.14001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5653contigL-elsbetiae_contig5653:2796..4183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_004250.1
Exons1
Model size1390
Cds size1167
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816601.6154838-UTR-L-elsbetiae_contig5653:2795..30161622816601.6154838-UTR-L-elsbetiae_contig5653:2795..3016Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5653 2796..3016 +
1691683677.0321593-UTR-L-elsbetiae_contig5653:2795..30161691683677.0321593-UTR-L-elsbetiae_contig5653:2795..3016Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5653 2796..3016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816601.631895-CDS-L-elsbetiae_contig5653:3016..41831622816601.631895-CDS-L-elsbetiae_contig5653:3016..4183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5653 3017..4183 +
1691683677.043574-CDS-L-elsbetiae_contig5653:3016..41831691683677.043574-CDS-L-elsbetiae_contig5653:3016..4183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5653 3017..4183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5653.14001.1prot_L-elsbetiae_contig5653.14001.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5653 3017..4183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5653.14001.1

>prot_L-elsbetiae_contig5653.14001.1 ID=prot_L-elsbetiae_contig5653.14001.1|Name=mRNA_L-elsbetiae_contig5653.14001.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=389bp
MIFFLGTRRYMLTNLGPRRTPLLRSRPDRPNQRTNQPLRMNSFEEDFLNW
ARAQLEKLPATFVDHALSTAPLTAASESESESESELVPTVTKKASPAAAA
GLSGGAGNGSGGGGGGSSGGRPSSGSNPKPADGSSGGRARGEMRSSGSGD
CSGSRGGGVGGGSSSSRAGDSRTGDSGTGSRSSPAKSKHFSSAAPAGAAG
TGAAAGAASAALTPQPVAMNGASVFGKKGNLSGGRAPEAGAGAFGAAAST
PNDQGASASVDAVNSSSAGTGSEAGSKAAPLLIDDDDDDDDGGGGGGGDG
GGSTPGDSEDGGSEKMSGRGGTERLGGRGGGGDGDDNHDPEDDPHWPTSG
DDEDGDEDEDDDEYLPSASKRLKTATGRPQGRRRRERRV
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mRNA from alignment at L-elsbetiae_contig5653:2796..4183+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5653.14001.1 ID=mRNA_L-elsbetiae_contig5653.14001.1|Name=mRNA_L-elsbetiae_contig5653.14001.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1388bp|location=Sequence derived from alignment at L-elsbetiae_contig5653:2796..4183+ (Laminarionema elsbetiae ELsaHSoW15)
CCAGAGATATCACCATGGAGTACACGCCTGAGGTGCTGCGGTTGCGATCA
GTGCTCAAGGGGCCGAGAATTAGATGGTGCTCAGGTATTTTGTGCTGGAT
GCTGAGTTATCATGGAACTCGCGCCCCAGTGACATCTTCGGGGGGGTATA
ACTTTTTCGGTTTCTTTTTTTGGTCCTATAAGAGTCGGCCCAAGTAGGAA
AAGGGGCCTTGATTGTCTGGCATGATTTTTTTTCTCGGTACCCGCAGGTA
TATGCTAACTAACCTCGGGCCTCGGCGTACCCCACTTCTCCGCTCTCGAC
CGGATCGACCGAACCAACGGACCAACCAACCTCTCAGAATGAACAGCTTC
GAGGAGGACTTCCTGAACTGGGCAAGGGCGCAGCTAGAGAAGCTCCCGGC
GACCTTCGTCGACCACGCCTTGTCGACCGCCCCCCTAACGGCAGCATCAG
AATCGGAATCGGAATCGGAATCGGAATTGGTACCGACCGTCACAAAGAAG
GCGTCGCCGGCGGCGGCCGCGGGGCTTTCGGGAGGAGCTGGAAACGGTAG
CGGCGGCGGCGGCGGGGGTAGCAGTGGTGGACGCCCGAGTAGCGGCAGTA
ACCCGAAGCCGGCCGACGGCAGCAGCGGGGGTAGGGCCCGCGGCGAGATG
AGGAGCTCCGGCTCTGGCGACTGCAGTGGCTCCCGCGGCGGCGGCGTTGG
CGGCGGCAGCAGCAGCAGCAGAGCCGGTGACAGCAGAACCGGTGACAGCG
GCACTGGCAGCCGGAGTAGCCCCGCCAAGAGCAAGCACTTCTCATCTGCC
GCTCCTGCTGGTGCTGCTGGTACTGGTGCTGCTGCCGGTGCTGCTAGCGC
CGCGCTGACGCCACAACCGGTGGCGATGAACGGGGCCTCTGTCTTCGGGA
AGAAGGGGAATCTCTCGGGTGGTCGAGCCCCAGAAGCCGGAGCCGGGGCT
TTCGGGGCGGCGGCATCGACGCCGAATGACCAGGGCGCTAGCGCCAGCGT
CGACGCCGTCAACAGCAGCAGCGCCGGTACCGGGTCGGAGGCGGGGTCAA
AGGCCGCGCCGTTGCTGATCGACGACGACGACGACGACGACGACGGCGGC
GGCGGCGGCGGCGGCGATGGCGGTGGTTCGACTCCCGGAGACAGCGAGGA
CGGTGGCTCCGAGAAGATGTCGGGCAGAGGGGGCACCGAGAGACTAGGCG
GGCGTGGTGGCGGTGGCGACGGCGACGATAACCACGACCCCGAGGACGAT
CCCCACTGGCCGACCTCCGGTGACGACGAGGACGGGGACGAAGACGAAGA
CGACGACGAGTACCTCCCGTCCGCCTCGAAGCGCCTCAAGACGGCGACGG
GGCGGCCGCAAGGGAGGCGCCGTCGAGAGAGAAGGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5653:2796..4183+

>mRNA_L-elsbetiae_contig5653.14001.1 ID=mRNA_L-elsbetiae_contig5653.14001.1|Name=mRNA_L-elsbetiae_contig5653.14001.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2334bp|location=Sequence derived from alignment at L-elsbetiae_contig5653:2796..4183+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATTTTTTTTCTCGGTACCCGCAGGTATATGCTAACTAACCTCGGGCC
TCGGCGTACCCCACTTCTCCGCTCTCGACCGGATCGACCGAACCAACGGA
CCAACCAACCTCTCAGAATGAACAGCTTCGAGGAGGACTTCCTGAACTGG
GCAAGGGCGCAGCTAGAGAAGCTCCCGGCGACCTTCGTCGACCACGCCTT
GTCGACCGCCCCCCTAACGGCAGCATCAGAATCGGAATCGGAATCGGAAT
CGGAATTGGTACCGACCGTCACAAAGAAGGCGTCGCCGGCGGCGGCCGCG
GGGCTTTCGGGAGGAGCTGGAAACGGTAGCGGCGGCGGCGGCGGGGGTAG
CAGTGGTGGACGCCCGAGTAGCGGCAGTAACCCGAAGCCGGCCGACGGCA
GCAGCGGGGGTAGGGCCCGCGGCGAGATGAGGAGCTCCGGCTCTGGCGAC
TGCAGTGGCTCCCGCGGCGGCGGCGTTGGCGGCGGCAGCAGCAGCAGCAG
AGCCGGTGACAGCAGAACCGGTGACAGCGGCACTGGCAGCCGGAGTAGCC
CCGCCAAGAGCAAGCACTTCTCATCTGCCGCTCCTGCTGGTGCTGCTGGT
ACTGGTGCTGCTGCCGGTGCTGCTAGCGCCGCGCTGACGCCACAACCGGT
GGCGATGAACGGGGCCTCTGTCTTCGGGAAGAAGGGGAATCTCTCGGGTG
GTCGAGCCCCAGAAGCCGGAGCCGGGGCTTTCGGGGCGGCGGCATCGACG
CCGAATGACCAGGGCGCTAGCGCCAGCGTCGACGCCGTCAACAGCAGCAG
CGCCGGTACCGGGTCGGAGGCGGGGTCAAAGGCCGCGCCGTTGCTGATCG
ACGACGACGACGACGACGACGACGGCGGCGGCGGCGGCGGCGGCGATGGC
GGTGGTTCGACTCCCGGAGACAGCGAGGACGGTGGCTCCGAGAAGATGTC
GGGCAGAGGGGGCACCGAGAGACTAGGCGGGCGTGGTGGCGGTGGCGACG
GCGACGATAACCACGACCCCGAGGACGATCCCCACTGGCCGACCTCCGGT
GACGACGAGGACGGGGACGAAGACGAAGACGACGACGAGTACCTCCCGTC
CGCCTCGAAGCGCCTCAAGACGGCGACGGGGCGGCCGCAAGGGAGGCGCC
GTCGAGAGAGAAGGGTGATGATTTTTTTTCTCGGTACCCGCAGGTATATG
CTAACTAACCTCGGGCCTCGGCGTACCCCACTTCTCCGCTCTCGACCGGA
TCGACCGAACCAACGGACCAACCAACCTCTCAGAATGAACAGCTTCGAGG
AGGACTTCCTGAACTGGGCAAGGGCGCAGCTAGAGAAGCTCCCGGCGACC
TTCGTCGACCACGCCTTGTCGACCGCCCCCCTAACGGCAGCATCAGAATC
GGAATCGGAATCGGAATCGGAATTGGTACCGACCGTCACAAAGAAGGCGT
CGCCGGCGGCGGCCGCGGGGCTTTCGGGAGGAGCTGGAAACGGTAGCGGC
GGCGGCGGCGGGGGTAGCAGTGGTGGACGCCCGAGTAGCGGCAGTAACCC
GAAGCCGGCCGACGGCAGCAGCGGGGGTAGGGCCCGCGGCGAGATGAGGA
GCTCCGGCTCTGGCGACTGCAGTGGCTCCCGCGGCGGCGGCGTTGGCGGC
GGCAGCAGCAGCAGCAGAGCCGGTGACAGCAGAACCGGTGACAGCGGCAC
TGGCAGCCGGAGTAGCCCCGCCAAGAGCAAGCACTTCTCATCTGCCGCTC
CTGCTGGTGCTGCTGGTACTGGTGCTGCTGCCGGTGCTGCTAGCGCCGCG
CTGACGCCACAACCGGTGGCGATGAACGGGGCCTCTGTCTTCGGGAAGAA
GGGGAATCTCTCGGGTGGTCGAGCCCCAGAAGCCGGAGCCGGGGCTTTCG
GGGCGGCGGCATCGACGCCGAATGACCAGGGCGCTAGCGCCAGCGTCGAC
GCCGTCAACAGCAGCAGCGCCGGTACCGGGTCGGAGGCGGGGTCAAAGGC
CGCGCCGTTGCTGATCGACGACGACGACGACGACGACGACGGCGGCGGCG
GCGGCGGCGGCGATGGCGGTGGTTCGACTCCCGGAGACAGCGAGGACGGT
GGCTCCGAGAAGATGTCGGGCAGAGGGGGCACCGAGAGACTAGGCGGGCG
TGGTGGCGGTGGCGACGGCGACGATAACCACGACCCCGAGGACGATCCCC
ACTGGCCGACCTCCGGTGACGACGAGGACGGGGACGAAGACGAAGACGAC
GACGAGTACCTCCCGTCCGCCTCGAAGCGCCTCAAGACGGCGACGGGGCG
GCCGCAAGGGAGGCGCCGTCGAGAGAGAAGGGTG
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