mRNA_L-elsbetiae_contig565.13993.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig565.13993.1
Unique NamemRNA_L-elsbetiae_contig565.13993.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig565.13993.1 vs. uniprot
Match: D7FSX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX9_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 3.500e-26
Identity = 87/115 (75.65%), Postives = 95/115 (82.61%), Query Frame = 1 
Query:  112 EGQYIMKIDGVKRRHGLGTHANGKEKYVGEWQHDSMHGQGDMVFSSGASYRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTDSEKSRWEGEFFNGMYDNGRAKVALR 456
            EGQYI+ IDGVK+R+G GTH NGK+KY+GEWQ DSMHGQG+M+FSS ASYR     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          G+FFNGMYDNGRAKVALR
Sbjct:   18 EGQYIV-IDGVKKRNGFGTHTNGKDKYIGEWQLDSMHGQGEMIFSSDASYRGSFAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFFNGMYDNGRAKVALR 131
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BLAST of mRNA_L-elsbetiae_contig565.13993.1 vs. uniprot
Match: A0A5J4XWK7_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XWK7_9CHLO)

HSP 1 Score: 70.5 bits (171), Expect = 2.880e-12
Identity = 39/100 (39.00%), Postives = 50/100 (50.00%), Query Frame = 1 
Query:   43 EETAPPEPETGEGKFVFPNGAVYEGQYIMKIDGVK----------------------------RRHGLGTHANGKEKYVGEWQHDSMHGQGDMVFSSGAS 258
            E+T PP P+TG GKF F NGA YEG++ MK+  VK                             RHG G + +GK KY GEW  D MHG G  +++SG +
Sbjct:   12 EDTPPPPPQTGSGKFYFKNGATYEGEW-MKVPSVKDEAAEVKPADAKAAAAAAASDQLDAVQMMRHGKGLYMDGKYKYSGEWNKDMMHGTGKFIYASGTT 110
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BLAST of mRNA_L-elsbetiae_contig565.13993.1 vs. uniprot
Match: A0A482SK30_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SK30_9ARCH)

HSP 1 Score: 69.3 bits (168), Expect = 5.870e-12
Identity = 75/128 (58.59%), Postives = 93/128 (72.66%), Query Frame = 1 
Query:   73 GEGKFVFPNGAVYEGQYIMKIDGVKRRHGLGTHANGKEKYVGEWQHDSMHGQGDMVFSSGASYRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTDSEKSRWEGEFFNGMYDNGRAKVALR 456
            G G F+ P+ + YEG+Y+ + DG K R G G  + G E Y G W++DS+ G+G+  FSSGA Y XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     K  + G+F NG YD G++ V++R
Sbjct:   28 GSGSFLLPDNSTYEGEYL-ETDGRKIRQGQGKMSFGPELYEGGWENDSLSGEGEYRFSSGARYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQEFGGQFVNGFYDTGKSYVSIR 154
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BLAST of mRNA_L-elsbetiae_contig565.13993.1 vs. uniprot
Match: A0A5A8CPM1_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CPM1_CAFRO)

HSP 1 Score: 64.3 bits (155), Expect = 3.980e-10
Identity = 29/61 (47.54%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   79 GKFVFPNGAVYEGQYIMKIDGVKRRHGLGTHANGKEKYVGEWQHDSMHGQGDMVFSSGASY 261
            GKFVF +GAVYEG++     GV+R HG G++++G E Y G W+ D MHG+G+   ++GA++
Sbjct:   24 GKFVFGDGAVYEGEFRETSAGVQR-HGEGSYSDGAETYTGSWESDEMHGRGEYRSATGATF 83
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BLAST of mRNA_L-elsbetiae_contig565.13993.1 vs. uniprot
Match: A0A814EBE2_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A814EBE2_9BILA)

HSP 1 Score: 63.9 bits (154), Expect = 5.580e-10
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   85 FVFPNGAVYEGQYIMKIDGVKRRHGLGTHANGKEKYV--GEWQHDSMHGQGDMVFSSGASY 261
            F+F NG  Y+G+YI+  +G   RHG G H    ++Y+  G W HD MHG G + F++G SY
Sbjct:   26 FIFANGDRYDGEYIITNEGQVMRHGHGKHIGVNQQYIYEGSWNHDKMHGTGQLTFANGTSY 86
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BLAST of mRNA_L-elsbetiae_contig565.13993.1 vs. uniprot
Match: A0A819KBX6_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A819KBX6_9BILA)

HSP 1 Score: 57.4 bits (137), Expect = 1.700e-7
Identity = 28/61 (45.90%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:   85 FVFPNGAVYEGQYIMKIDGVKRRHGLGTH--ANGKEKYVGEWQHDSMHGQGDMVFSSGASY 261
            FVF NG  Y+G+YI+   G   RHG G +  AN +  Y G W HD MHG G + F +  SY
Sbjct:   26 FVFANGDRYDGEYIITDAGQIMRHGHGKYISANQQCTYEGSWNHDKMHGTGQLTFDNSTSY 86
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BLAST of mRNA_L-elsbetiae_contig565.13993.1 vs. uniprot
Match: A0A2K1KBC7_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KBC7_PHYPA)

HSP 1 Score: 57.4 bits (137), Expect = 2.730e-7
Identity = 32/90 (35.56%), Postives = 47/90 (52.22%), Query Frame = 1 
Query:   70 TGEGKFVFPNGAVYEGQYIM--KID-GV------------------------KRRHGLGTHANGKEKYVGEWQHDSMHGQGDMVFSSGAS 258
            +G GKF +P GA YEG +++  ++D GV                        ++RHG G + +G  +Y GEW++D MHGQG   + SGAS
Sbjct:   27 SGAGKFFYPTGATYEGDWVVVAEVDEGVPATPXXXXXXXXXXHPPLEQMRPNRQRHGKGVYIDGNYQYNGEWKYDKMHGQGCFKYESGAS 116
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BLAST of mRNA_L-elsbetiae_contig565.13993.1 vs. uniprot
Match: A0A0D2LVS0_9CHLO (MORN repeat-containing protein 2 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LVS0_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 1.300e-6
Identity = 31/92 (33.70%), Postives = 46/92 (50.00%), Query Frame = 1 
Query:   67 ETGEGKFVFPNGAVYEGQY-IMKI-----DGVKR---------------------RHGLGTHANGKEKYVGEWQHDSMHGQGDMVFSSGASY 261
            E+G G+F +P+G+ YEG Y ++ +     +G ++                     RHG GT+  G   Y G+WQ D+M GQG   F+SGA Y
Sbjct:   21 ESGSGRFFYPDGSTYEGDYRVVNVLPAAPEGPRKSSXXXXXXXXXXXPAEPPKRVRHGNGTYTCGAYSYAGDWQEDAMQGQGRFQFASGAVY 112
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BLAST of mRNA_L-elsbetiae_contig565.13993.1 vs. uniprot
Match: D8RB44_SELML (Uncharacterized protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RB44_SELML)

HSP 1 Score: 54.7 bits (130), Expect = 1.840e-6
Identity = 32/86 (37.21%), Postives = 42/86 (48.84%), Query Frame = 1 
Query:   52 APPEPETGEGKFVFPNGAVYEGQYIMK-----------------IDGVKR-RHGLGTHANGKEKYVGEWQHDSMHGQGDMVFSSGA 255
            AP EP    GKF +P G  YEG +I++                  D  KR R G G + +G   Y GEW++D MHG G   ++SGA
Sbjct:    4 APVEPVKSTGKFYYPGGGTYEGDWILQPPLPPVPGAPPPADPAAADKPKRLRDGKGHYIDGNYSYEGEWKNDLMHGPGSFKYASGA 89
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BLAST of mRNA_L-elsbetiae_contig565.13993.1 vs. uniprot
Match: A0A7S4E1Z1_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4E1Z1_9EUKA)

HSP 1 Score: 55.8 bits (133), Expect = 3.130e-6
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:   43 EETAPPEPETGEGKFVFPNGAVYEGQYIMKIDGVKRRHGLGT-HANGKEKYVGEWQHDS 216
            EE    EP TG G+FVFP+G  YEG++I   DGVK +HG G     G   Y GEW +D+
Sbjct:   14 EELEKKEPITGSGRFVFPDGTSYEGEWIDNGDGVKMKHGKGVLKIKGGVTYDGEWDNDA 72
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig565.13993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FSX9_ECTSI3.500e-2675.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5J4XWK7_9CHLO2.880e-1239.00Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
A0A482SK30_9ARCH5.870e-1258.59Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A5A8CPM1_CAFRO3.980e-1047.54Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A814EBE2_9BILA5.580e-1044.26Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]
A0A819KBX6_9BILA1.700e-745.90Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A2K1KBC7_PHYPA2.730e-735.56Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A0D2LVS0_9CHLO1.300e-633.70MORN repeat-containing protein 2 n=1 Tax=Monoraphi... [more]
D8RB44_SELML1.840e-637.21Uncharacterized protein n=2 Tax=Selaginella moelle... [more]
A0A7S4E1Z1_9EUKA3.130e-649.15Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig565contigL-elsbetiae_contig565:22878..24870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue5.4e-11
Seed eggNOG ortholog157072.XP_008862129.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-27_006760.1
Exons4
Model size459
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig565.13993.1prot_L-elsbetiae_contig565.13993.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig565 22878..24870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816601.0592124-CDS-L-elsbetiae_contig565:22877..229831622816601.0592124-CDS-L-elsbetiae_contig565:22877..22983Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 22878..22983 -
1691683676.65014-CDS-L-elsbetiae_contig565:22877..229831691683676.65014-CDS-L-elsbetiae_contig565:22877..22983Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 22878..22983 -
1622816601.0730186-CDS-L-elsbetiae_contig565:23515..236391622816601.0730186-CDS-L-elsbetiae_contig565:23515..23639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 23516..23639 -
1691683676.6667144-CDS-L-elsbetiae_contig565:23515..236391691683676.6667144-CDS-L-elsbetiae_contig565:23515..23639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 23516..23639 -
1622816601.0854745-CDS-L-elsbetiae_contig565:24060..241771622816601.0854745-CDS-L-elsbetiae_contig565:24060..24177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 24061..24177 -
1691683676.6773474-CDS-L-elsbetiae_contig565:24060..241771691683676.6773474-CDS-L-elsbetiae_contig565:24060..24177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 24061..24177 -
1622816601.0964293-CDS-L-elsbetiae_contig565:24758..248701622816601.0964293-CDS-L-elsbetiae_contig565:24758..24870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 24759..24870 -
1691683676.6878467-CDS-L-elsbetiae_contig565:24758..248701691683676.6878467-CDS-L-elsbetiae_contig565:24758..24870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 24759..24870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig565.13993.1

>prot_L-elsbetiae_contig565.13993.1 ID=prot_L-elsbetiae_contig565.13993.1|Name=mRNA_L-elsbetiae_contig565.13993.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
MQRLCSIRESRDPDEETAPPEPETGEGKFVFPNGAVYEGQYIMKIDGVKR
RHGLGTHANGKEKYVGEWQHDSMHGQGDMVFSSGASYRGSFEANKFHGFG
RYEWYDGATYAGGWRENKMHGKGCYTDSEKSRWEGEFFNGMYDNGRAKVA
LR*
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mRNA from alignment at L-elsbetiae_contig565:22878..24870-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig565.13993.1 ID=mRNA_L-elsbetiae_contig565.13993.1|Name=mRNA_L-elsbetiae_contig565.13993.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1993bp|location=Sequence derived from alignment at L-elsbetiae_contig565:22878..24870- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAACGGCTGTGCAGCATAAGGGAATCTAGGGACCCGGATGAGGAGAC
GGCCCCTCCGGAGCCAGAGACCGGAGAGGGAAAATTTGTATTTCCGAACG
GAGCTGTTTATGGTGGGTCAACTTCATTACACAGGCAAACAATACCAGCC
GGTGATAAATCCATGGATGTGTGTAAAGTTATGTACACAGATAGGCTAGT
CTAAGTACACCGCAAGGTAGGTGTAGATAGTACACGTCTCCACTTGGTTG
GGGGGGACTGTCGCCAAAATAAATGGGAAGGACACACACACAACACACAT
ACAGATAGGCTATAGTCTATAATGTAGATAGATGTTGTAGTCTAGACTTG
TATGAGATCCTTAATTCGTAGAGCTTCCTTAAGGTGCATCAAGCAGTTGT
AGAGCTTCCTCCCCACCACGCAAAGTGGATGCAGTTTTGGTACGCTGCGT
CGTTTAATAGTGTTGTAGCAGAACCGCCTAGATACTGACTGTAACAAAGA
AAGTTGAAAATTTCATACAACAACACCAGTATCTGTCCTAAGACCGCTCA
AAGCAGGAGCGCATAGTCTATTATTTGATCAATCTTATATACCGTGGGCT
CAACCCGGCCGTCAAGGCGTCGAGCCAATAATTCCATTCAAGCATGCGGC
ATCACACCCTCCACATATATCTAATCTGTGTTTCTGTGTGCAGAAGGACA
ATACATAATGAAAATTGATGGGGTGAAGAGACGTCACGGCCTTGGAACGC
ATGCGAACGGCAAGGAGAAGTACGTTGGAGAGTGGCAGCACGACTCGATG
CACGGCCAAGGTGAATTACGAACGAAAAGGTTGGCATGACTTGCACGTGC
AGAGCATATCTGCCTCTTAAAGGTTCTGGGTTTCGACTGTATCTAGCTAC
ACTGACGAGCAAAGAGCTTTAAATAGTCTATAGTCTATCTATGTAGTTCC
ATAAGAACCTCCTTCAGGAAATGGAAGTTGGTGTACTACAGAGAGACTGC
GTTGGAATCAACACTGCAACGCGATGTAGAGTGCCCGACTTCATGAAAAG
CGTGTGGTTCGACACCCCAGGTATGCCCAGAAATACACGTCACCTGTTCA
TTCATGTAAACCATTCGTGCTAAACGTCAACTGTTGAAAGCAGTAGAACC
GCAGGTATGCTCACAGTAAGCGTTGTGTTCGCCCATTTAGCCTTACCACC
AAGATACCGCGGGCGGTGTTTGCGTTCTCAGGTGACATGGTGTTCTCCTC
TGGTGCCAGCTACCGGGGGTCTTTCGAAGCCAATAAATTTCATGGTTTTG
GCCGATATGAGTGGTACGACGGCGCGACGTACGCGGGCGGCTGGAGAGAG
AACAAGTGGGTGCTTGATTGTCCTGTCGACCAAAAATGTTTCGTCGCCAT
ATGACTACCTAGACATAGACTACACAGTCTCTTACTTACGTGGGTATGTG
TATCGTGAAAGTTCGCGGAAATAAGTCGGGAATCTTTACGCGGTTGAGGC
CGGGTTCATCTCGACTTGAGGACCCTCTGTAAGTGCCGGGAATTACAATC
TGGTGAATCATTTACATTATTGGAATTGTCACCATAGAGACCCACGGTAA
CTCACGGGCAACCGTGGCTACCCATGGGTGGCCGCGGTTATACATAGCTA
GTGATCCACTGTCCGTGGGTACCCATGGGTACCCATGGTGAGTCACCAAG
GGGACCCACGGCTAACCACAGTGACCACCATGGGGACCCATGGTGACAAT
TCCAATAGTGTACATGACCCGATCTGGTGAACAATGCTCAGCCTAAAAGT
TAGTAGCTACAGGCTTGGCCATTTCAGCCAAGGTCGCAGCAACGGTTTGT
AACCTCATTACCCTTCACCCCCCGTCGCCCTGAACAGGATGCACGGCAAG
GGGTGCTACACGGATAGTGAGAAAAGCCGGTGGGAAGGAGAGTTTTTCAA
CGGCATGTACGACAACGGCCGCGCGAAAGTTGCTTTACGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig565:22878..24870-

>mRNA_L-elsbetiae_contig565.13993.1 ID=mRNA_L-elsbetiae_contig565.13993.1|Name=mRNA_L-elsbetiae_contig565.13993.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig565:22878..24870- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAACGGCTGTGCAGCATAAGGGAATCTAGGGACCCGGATGAGGAGAC
GGCCCCTCCGGAGCCAGAGACCGGAGAGGGAAAATTTGTATTTCCGAACG
GAGCTGTTTATGATGCAACGGCTGTGCAGCATAAGGGAATCTAGGGACCC
GGATGAGGAGACGGCCCCTCCGGAGCCAGAGACCGGAGAGGGAAAATTTG
TATTTCCGAACGGAGCTGTTTATGAAGGACAATACATAATGAAAATTGAT
GGGGTGAAGAGACGTCACGGCCTTGGAACGCATGCGAACGGCAAGGAGAA
GTACGTTGGAGAGTGGCAGCACGACTCGATGCACGGCCAAGAAGGACAAT
ACATAATGAAAATTGATGGGGTGAAGAGACGTCACGGCCTTGGAACGCAT
GCGAACGGCAAGGAGAAGTACGTTGGAGAGTGGCAGCACGACTCGATGCA
CGGCCAAGGTGACATGGTGTTCTCCTCTGGTGCCAGCTACCGGGGGTCTT
TCGAAGCCAATAAATTTCATGGTTTTGGCCGATATGAGTGGTACGACGGC
GCGACGTACGCGGGCGGCTGGAGAGAGAACAAGTGACATGGTGTTCTCCT
CTGGTGCCAGCTACCGGGGGTCTTTCGAAGCCAATAAATTTCATGGTTTT
GGCCGATATGAGTGGTACGACGGCGCGACGTACGCGGGCGGCTGGAGAGA
GAACAAGATGCACGGCAAGGGGTGCTACACGGATAGTGAGAAAAGCCGGT
GGGAAGGAGAGTTTTTCAACGGCATGTACGACAACGGCCGCGCGAAAGTT
GCTTTACGTTGAGATGCACGGCAAGGGGTGCTACACGGATAGTGAGAAAA
GCCGGTGGGAAGGAGAGTTTTTCAACGGCATGTACGACAACGGCCGCGCG
AAAGTTGCTTTACGTTGA
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