mRNA_L-elsbetiae_contig565.13990.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig565.13990.1
Unique NamemRNA_L-elsbetiae_contig565.13990.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig565.13990.1 vs. uniprot
Match: D8LAZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ2_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 3.020e-97
Identity = 154/192 (80.21%), Postives = 169/192 (88.02%), Query Frame = 1 
Query:    1 MGSIFSCVLDDESLDKHELERLNILKKGRRFGRRKMVAMGVSLGSEPAVVRLSEDETTVSWRSAEAPTFGNVKVTNVHNVKSVGAMGLALLGKGNSKELELEAADAATRDVWVIALGEAVERSKNSGKHKEAEREAMVQEDAANKAEYWATRSKELKDVEAAAQERKKKYAGSGMQFTAQALANKSGSFKSQ 576
            MGSIFSCV +++ LDKHE ERL++LKKG RFGRRKMVAMGVSLGSEPA+VRLS+D++TVSW SA+APTFG+VKVT+V NVK  GA GL LLGKGNSKELELE ADAATRD+WVIAL E VERSK SGKH EAE EA  QE + NKAEYWATR KEL DVEAAA ERKKKYAG+GMQFTAQALANKSGSFKSQ
Sbjct:    1 MGSIFSCVTEEDKLDKHEQERLDLLKKGERFGRRKMVAMGVSLGSEPAMVRLSDDQSTVSWASADAPTFGSVKVTSVQNVKPAGATGLVLLGKGNSKELELETADAATRDLWVIALQEVVERSKMSGKHNEAELEAQAQELSENKAEYWATRRKELHDVEAAAAERKKKYAGAGMQFTAQALANKSGSFKSQ 192
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig565.13990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAZ2_ECTSI3.020e-9780.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig565contigL-elsbetiae_contig565:4496..9309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.1
Seed ortholog evalue9.4e-77
Seed eggNOG ortholog2880.D8LAZ2
Hectar predicted targeting categoryother localisation
EggNOG OGs2DXZQ@1,2S516@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_005870.1
Exons5
Model size693
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig565.13990.1prot_L-elsbetiae_contig565.13990.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig565 4496..9198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816600.7830534-CDS-L-elsbetiae_contig565:4495..45821622816600.7830534-CDS-L-elsbetiae_contig565:4495..4582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 4496..4582 +
1691683676.4621434-CDS-L-elsbetiae_contig565:4495..45821691683676.4621434-CDS-L-elsbetiae_contig565:4495..4582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 4496..4582 +
1622816600.7948365-CDS-L-elsbetiae_contig565:5940..60721622816600.7948365-CDS-L-elsbetiae_contig565:5940..6072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 5941..6072 +
1691683676.4750407-CDS-L-elsbetiae_contig565:5940..60721691683676.4750407-CDS-L-elsbetiae_contig565:5940..6072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 5941..6072 +
1622816600.807664-CDS-L-elsbetiae_contig565:7784..79011622816600.807664-CDS-L-elsbetiae_contig565:7784..7901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 7785..7901 +
1691683676.4855778-CDS-L-elsbetiae_contig565:7784..79011691683676.4855778-CDS-L-elsbetiae_contig565:7784..7901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 7785..7901 +
1622816600.8189154-CDS-L-elsbetiae_contig565:8181..82801622816600.8189154-CDS-L-elsbetiae_contig565:8181..8280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 8182..8280 +
1691683676.4969761-CDS-L-elsbetiae_contig565:8181..82801691683676.4969761-CDS-L-elsbetiae_contig565:8181..8280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 8182..8280 +
1622816600.8323588-CDS-L-elsbetiae_contig565:9051..91981622816600.8323588-CDS-L-elsbetiae_contig565:9051..9198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 9052..9198 +
1691683676.5083957-CDS-L-elsbetiae_contig565:9051..91981691683676.5083957-CDS-L-elsbetiae_contig565:9051..9198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 9052..9198 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816600.8481715-UTR-L-elsbetiae_contig565:9198..93091622816600.8481715-UTR-L-elsbetiae_contig565:9198..9309Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig565 9199..9309 +
1691683676.5195124-UTR-L-elsbetiae_contig565:9198..93091691683676.5195124-UTR-L-elsbetiae_contig565:9198..9309Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig565 9199..9309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig565.13990.1

>prot_L-elsbetiae_contig565.13990.1 ID=prot_L-elsbetiae_contig565.13990.1|Name=mRNA_L-elsbetiae_contig565.13990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=194bp
MGSIFSCVLDDESLDKHELERLNILKKGRRFGRRKMVAMGVSLGSEPAVV
RLSEDETTVSWRSAEAPTFGNVKVTNVHNVKSVGAMGLALLGKGNSKELE
LEAADAATRDVWVIALGEAVERSKNSGKHKEAEREAMVQEDAANKAEYWA
TRSKELKDVEAAAQERKKKYAGSGMQFTAQALANKSGSFKSQA*
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mRNA from alignment at L-elsbetiae_contig565:4496..9309+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig565.13990.1 ID=mRNA_L-elsbetiae_contig565.13990.1|Name=mRNA_L-elsbetiae_contig565.13990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4814bp|location=Sequence derived from alignment at L-elsbetiae_contig565:4496..9309+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCTCCATCTTCAGCTGCGTTCTTGACGACGAAAGTCTGGACAAGCA
CGAGCTGGAAAGACTCAACATCCTCAAGAAAGGTAGGGTGTGAATTCAAG
CCAACAAGCGCATTTTGTTTCGTCGCTCTTTCTCGACCCGTGTTCGTCCT
TTGTTTGACGGAACCGGCCTCACGCCACAACGGGTCCCAAAATATCATGT
CTGTGGTTGAATATCCGTGGTGGTGATGGCGGCGATGCGCCATCACTTAT
TAAATTACTGTGTAGGAATTCCAAGGTTTCGTCTATTTTTCATTTTCCAA
ACGGCAGGGGTACAGACCACAAACGACAGCCGTGCGCTTGCTCTTGCCGA
CCAACAACTACAGAGCTACAGCAGTAGAGCAGGAAGCTTGTACTGAGTAT
TTCCTCAGTGCACTCATCTCTAGAGGTTGGAGAAGGGGGGGAGGGGGGTG
TCACGGCCAGTCCGACATATCGTACATATTCACGAGCTGTGTAATCCGGG
CACATCTCTCGCCTCCGTACAATAAACGGGAGGTTAGAAGGAAAGGACCT
ACATTGTTGTTGTACATGTACACAGAGAAACGTGTAGCTCTCGCCAAAGA
TGTAGGTACAGACTTGGCGCGATTGGCAGTGATATCGTCGGCATGCTCTA
CTGTTGCTGTAGGCTTCGCCGAATGTCTTGTTCTTGGGCCCTTTGACACC
GGGGAATGCATTGGCGGGCGGTTCCACTTTCTTCAATATTTCAATATTTC
CACTTCCACCTTTCGGTCCCGCTCAGCTCTGACCCAATTGCCCCCTCGCC
GAGGGCTGCTTGGACTACGCACATACATAATGGTAGTTGATACACACGTT
TACTTTCACACCAACCTCAGTCTCTAAAAACGGACCGGCTCTATCTGGTC
ATGGGTCAAACTTGGAAGGGCCATCCGCAGCGTAGACAAGACATTCTAGG
TTTTTACATACATATTGTGTACAGCAGTTCATACAAATACAGAGGCGTAA
AAGTACTACTAAGTAAATAGAACGAGTACCAAGCTACAAACATGCAGCCC
GGTTGTTTATCTCCTCACATATCCTACCGCAGCAGTGCAGTCTCACAAGA
TCCGTTTGCAGCGGCAGATAGAAAGGCAGCAAGAGAGTTATTAACAAAGC
AGTGTGCCACGAGATGAAGGCCGCAGGAAGGGGTCGCACCACCGCAGGAA
GGGGTCGCACCACCTTCGGGAAAACAACACCGAGGTTTATCCGGGCAAAC
TGCTTGTACCCAAGCTACACATGTGAGCGGGACACCTCAAAAAGGAATCC
CGACACCGGCTCTTCTGATTGGCTGTCCGGCTGTTCGCCCCGCCCCCCCC
TCTATGTTGCAACCCTCCTCGCGCGAAATTCTGGGGTGAATTGGGAATGA
TCAACGATACGATACCGGTAACGGTATGTGACGATCGCAGGGGAGCGGTT
CGGGCGGCGGAAGATGGTGGCCATGGGCGTGTCTCTTGGGTCAGAACCCG
CGGTGGTGCGTCTGAGCGAAGACGAGACGACCGTCTCGTGGAGGAGTGCG
GAAGCCCCCACCTTCGGCAACGTCAAGGTGTGACAGGCGCTGGCAGATTG
TTGATCGTTAGTTATGACATCGTTGTCGTTACAGGAGCTTGGTACCATGT
GTTAGTACATACATGGTTGAGAAGTCCAGTCCCGCTTCAACTTGACTTGA
AATGGTCGGGCAAGAAACCTGAACTCTGAAACCTGGATAAAAGATGCCCC
ACAGAGAAACGAGAAACCCACCTCTCGGGCCAATAAGAGCAGTTGAATAA
GAGGTTGCAGTTGAATCATAAGTTCTTATCCCTTCTGGGACTTCAAGGGG
GGTTTGGTGATACAAAAAGGGATCATTGAGACGCCCGTTTTTTTGCGGAC
CTGGGCTAGTCGGCACATTGAGACGATTACACGAACAGTCGATATGGCCA
CCCACAGGTAGGGTGGCAGGCACAGCAGCAGCAGGGTTGTAACGCGCTAT
GTTTCGTGTCCAGCAGCCTGCTACAGCTGCCGCCGCCGCTGCAGCTTTGG
CTGCTGCATTTTGGAGTTTGGGTTTTTTTACGAAATCGGTTTTGCTCTCG
CTCTCATCCCCACACATCACATGACGCAGCATGCAAACCACAAATACACC
AGCACAAGCGCATATCTACAACAGCAGTAACCGCCAAACACCTCTTCGAT
TTCTGTTTAAACGTCTATACCAGCAACCGGTGTAGATGGATCTGCTTGTT
GTCATTGGGTATTCCAAAGTAACCGAGCGCCAGAGGCGGGACTCTATCCG
GCGGCCCCCCGAGAAGCCGTGAAGTAGCCTGTTGCTCTAGGCACTTCGCC
ACGAATTTAGTGATCATTTTTGGTGATTATCTGGTATATACTGAATTTAG
ACTGCTTCCAGAATAGTTCAGGACCCGGGATACAGCCCTACGAAAGGAGA
AAAACGTTTCGAGCGAACACTAGCAGTGATGTTTTGAGGGCCGATGAAGC
TTTCTAGTGTGCCAACAGACGTCCCCAGTGTGTTGCCGGGTGGCGACATG
GCAGCGGTGCGTGTTTTGCTGCGGAGTTGGCTTCTGCAAACAGAAGCCTC
TTTCAGAGCAGAGAACCCACGTATCTGCTGTGCGGTAAGTGCGGACCCGT
TATTTTTTAGTAGTCCCGCCGCGTTTTCTGGGCTGCTCGCCTTGCGGGCT
GTGACGAGCCTGGTGCCAGAGGGGTTTAGTGGTGGCGCCGTCTGGATATG
TACGTGTCTTAGTCTACGTTCGTGTGGGTTGGACTGTAACAGATGAAAGG
AATCGGGAAAACAGCAGCCATGTGTACCAGCTGGAAGAGGGCTTGCTATC
CCCGTCCGGAAGCACCAAACGTGGTGCCCCCCTGTAATACAGTAGTGGAA
AGTTTGGGTGTCGCTTGCGGTTCCCCTCCCCGCTGTAAAAGGATGTGTGA
GCATCGTGCCGAAAGTACTCTCGTTCGAATCCGTAGGGGTGGAGAGCCCT
GGGCTCCAACGCAGGGGTGTCACATCGATCGTTCGAATCGGATCACTCAC
CGCTCGAGCAAGTTAACGGGGACCTAGCTCTGCCGCCTCTTAGCAGAAAT
CCCGCGGTCGATGGTCCAACTTTGAGGACACTGGCTGCTCTGCCACCGAG
CACAAACGACGGCAGTAAAAAACCAAAAAACGGGTGTTTTTATGCTCTCT
TTTTTTTCCTTCTCCTTTTTCTACTGCTGTATTTACCTTCGGTTTTTGTT
TTGTCTGCCACGATGCTTGCGGTTCGATCCTCCGAACAGGTTACAAACGT
ACACAATGTGAAGTCTGTGGGGGCGATGGGGCTGGCGTTGCTGGGCAAGG
GTAACTCCAAGGAGCTCGAGCTTGAGGCAGCAGACGCAGCGACCAGGGAC
GTGTGGGTGAGTGGAGGCAAAAAGAGGAGGAGGAGGACGGGGGGGGCATC
ATTTCAGACAAGACGGATAGACGGAGCTTGAGCTAGAGAGGGGAATCGGT
GCTGCCAGAATGATGGAGCGAGAGGAAGGGATAGAAACAGGTGCGGGTCT
GTGTCGCATTCCGGTGTACCTACGTACTCGATGAGTCACGAATAGATGTC
CCATATTGGTTTGACCGCAAAGGAGGCGTTATTGCTCCTACTCTTTTCAT
ACAACAAACCATAACGGAACTGCTGTGTATCAACAGGTGATAGCGCTGGG
AGAAGCCGTGGAGAGGTCCAAGAACTCGGGGAAGCACAAGGAGGCAGAGC
GAGAGGCTATGGTCCAGGAGGATGCAGCGAACAAGGTAAGCTGCTAATAC
CAATTATTCATAGTACGGAGTGCATAGAGCTAAATGCGAAAAGCGGTATT
GTAGCAAAAACAACTTTTTCATAACCCACCCCGCCGCCCTGTCTGTGTAT
CCCTGTGAGCGCTTTGTCATTTGGGAATGGAACGAGATACGTTTCACGTC
CGGCTTAATTCTTCCATCATCGTACCTTTCAGACGTTTCAAGTATGTGTT
TCTATTTTTCCAGGCAGAGAGTGGAAGGCATGTATTACTATTGTTCACGT
TTTGCGGAAAGAATCATCCACCTTGATATTCTGTTCCAAGTTTCAACGTA
TGTATTCTGGTGAAAGCGAGCAGGATATACATTTGAGACCCTCCGAATTT
TTCTAATGCGTGGCTTTGCACAACGAGCCAAAAAACTACCAGCAGTCACA
AAGTCTGGCTTGACTCAAGGGGGTCGATTTGTCCCGTCATCTTACGTCGA
CACCTATCTATCTACGGCTGACAGAAATAAAATCACGGCGTTTCTTTGTT
TTCGCGTCGCTTCCTAACTTGCCAAACATTCGAATGTCACGTTCTATTTC
TCGCCATTGGGCCCCCGAGGGAGGATGACCCCGTGACCAAGTATTCCGCT
TCGCACACTGCTGTGACCGAGATTCACGCGGCATTGTTGTTGTTGTTGTC
TTGACAATAAAATCGTTACTCCTGTGAAATAAGAGAGAGAAAAAACGGTG
CGTCTTCGGTCTCGTGTCGCCTCCTGTCTGCAAATGTAAACACTCGTGGT
TTTCAGGCGGAGTACTGGGCGACCCGATCGAAAGAGCTCAAGGACGTCGA
GGCGGCAGCCCAGGAGAGAAAAAAGAAGTACGCAGGGTCCGGGATGCAGT
TTACCGCTCAGGCCCTCGCCAACAAGAGCGGGAGCTTCAAGTCCCAAGCT
TAGCTCAAGCCTCGAGGGGCTGGATTCGGTTTTTCGGTGGTACGGGTGGC
CGGGGTTCGGTTGGGTTGTAGCTTTTCTCTAAATATTTTGCGGGGTGTTG
TGTTGAGCCTTCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig565:4496..9309+

>mRNA_L-elsbetiae_contig565.13990.1 ID=mRNA_L-elsbetiae_contig565.13990.1|Name=mRNA_L-elsbetiae_contig565.13990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1164bp|location=Sequence derived from alignment at L-elsbetiae_contig565:4496..9309+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCTCCATCTTCAGCTGCGTTCTTGACGACGAAAGTCTGGACAAGCA
CGAGCTGGAAAGACTCAACATCCTCAAGAAAGGTAGGATGGGCTCCATCT
TCAGCTGCGTTCTTGACGACGAAAGTCTGGACAAGCACGAGCTGGAAAGA
CTCAACATCCTCAAGAAAGGTAGGCGGTTCGGGCGGCGGAAGATGGTGGC
CATGGGCGTGTCTCTTGGGTCAGAACCCGCGGTGGTGCGTCTGAGCGAAG
ACGAGACGACCGTCTCGTGGAGGAGTGCGGAAGCCCCCACCTTCGGCAAC
GTCAAGCGGTTCGGGCGGCGGAAGATGGTGGCCATGGGCGTGTCTCTTGG
GTCAGAACCCGCGGTGGTGCGTCTGAGCGAAGACGAGACGACCGTCTCGT
GGAGGAGTGCGGAAGCCCCCACCTTCGGCAACGTCAAGGTTACAAACGTA
CACAATGTGAAGTCTGTGGGGGCGATGGGGCTGGCGTTGCTGGGCAAGGG
TAACTCCAAGGAGCTCGAGCTTGAGGCAGCAGACGCAGCGACCAGGGACG
TGTGGGTTACAAACGTACACAATGTGAAGTCTGTGGGGGCGATGGGGCTG
GCGTTGCTGGGCAAGGGTAACTCCAAGGAGCTCGAGCTTGAGGCAGCAGA
CGCAGCGACCAGGGACGTGTGGGTGATAGCGCTGGGAGAAGCCGTGGAGA
GGTCCAAGAACTCGGGGAAGCACAAGGAGGCAGAGCGAGAGGCTATGGTC
CAGGAGGATGCAGCGAACAAGGTGATAGCGCTGGGAGAAGCCGTGGAGAG
GTCCAAGAACTCGGGGAAGCACAAGGAGGCAGAGCGAGAGGCTATGGTCC
AGGAGGATGCAGCGAACAAGGCGGAGTACTGGGCGACCCGATCGAAAGAG
CTCAAGGACGTCGAGGCGGCAGCCCAGGAGAGAAAAAAGAAGTACGCAGG
GTCCGGGATGCAGTTTACCGCTCAGGCCCTCGCCAACAAGAGCGGGAGCT
TCAAGTCCCAAGCTTAGGCGGAGTACTGGGCGACCCGATCGAAAGAGCTC
AAGGACGTCGAGGCGGCAGCCCAGGAGAGAAAAAAGAAGTACGCAGGGTC
CGGGATGCAGTTTACCGCTCAGGCCCTCGCCAACAAGAGCGGGAGCTTCA
AGTCCCAAGCTTAG
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