mRNA_L-elsbetiae_contig565.13989.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig565.13989.1
Unique NamemRNA_L-elsbetiae_contig565.13989.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig565.13989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig565contigL-elsbetiae_contig565:1652..4284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size480
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816600.7426035-CDS-L-elsbetiae_contig565:1653..20011622816600.7426035-CDS-L-elsbetiae_contig565:1653..2001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 1654..2001 -
1691683676.4322736-CDS-L-elsbetiae_contig565:1653..20011691683676.4322736-CDS-L-elsbetiae_contig565:1653..2001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 1654..2001 -
1622816600.7536852-CDS-L-elsbetiae_contig565:4155..42841622816600.7536852-CDS-L-elsbetiae_contig565:4155..4284Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 4156..4284 -
1691683676.450207-CDS-L-elsbetiae_contig565:4155..42841691683676.450207-CDS-L-elsbetiae_contig565:4155..4284Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig565 4156..4284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig565.13989.1prot_L-elsbetiae_contig565.13989.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig565 1654..4284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig565.13989.1

>prot_L-elsbetiae_contig565.13989.1 ID=prot_L-elsbetiae_contig565.13989.1|Name=mRNA_L-elsbetiae_contig565.13989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
TASVERKRGGRMPQGPGYLALPTIDSVGSVDSPGGNKDQPPRVAPALPPR
SGASAGITDHDPPGGLSAATVAPGATAAGGFQRTTSARSPTAAAGVVAGR
GASAASSTVASSSRGSSTSGGGSVASRGAGGGVGTRNSRRADSWTGAMDE
GPGGANDRE
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mRNA from alignment at L-elsbetiae_contig565:1652..4284-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig565.13989.1 ID=mRNA_L-elsbetiae_contig565.13989.1|Name=mRNA_L-elsbetiae_contig565.13989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2633bp|location=Sequence derived from alignment at L-elsbetiae_contig565:1652..4284- (Laminarionema elsbetiae ELsaHSoW15)
ACAGCAAGCGTGGAGCGCAAGCGTGGGGGAAGGATGCCTCAAGGTCCCGG
ATACCTGGCGCTTCCGACGATAGATTCTGTGGGATCAGTAGATAGCCCTG
GTGGAAACAAAGATCAGCCACCGCGAGTGGTAAGTTTGCAGCAATTGGGC
CGCCCTTCCGTCTTTTCTGTGCCCGAGGCACTGACTACACTGAGACCGGT
GGGATGCACGCTAGACGCGCCGGGGTGTACGCTAGACGCGCCGGGGTGGT
CGGAAACTGGTGCTGATATTGGTTATGTGCTGCTGCCCTATAGCGGCTGG
AGGAATTGATACCTGCATGCCTGCACAGCACCGGCAGAGACAGCGGTGAT
TCGAAAAGGCTGCACAGAGATGGTGCGCTCGGTGCTGTGTAGTTCCTATT
TCTCCATGCACTCGGATGCGGCGTCCTGTTTGCACGGTGGCAACGGTAGT
GCACTTTTTTTCGCGATGTGAACTCTCTCCGTCCAGATCAAGATCGCACC
TACATATGCAGTCTATACTACATATGGTACATGGTCTACAACTTGTTCGC
ACCGCCCCGCAACTCTCCCCGCGGTAGCACCGAGGAGTCGCAGACATGTG
TCATATGCCAGCTTGTAAGATCTGAAGTGGAGACAGGCTTCTAGTATTTC
GATGTTGGTTAGATGCAGAGAGAGAGGCGGAAAGGCGTGTCGCGGGGAAG
AATTCAGAATGTTTTCTCCCTTTTTTCGGTGCCAGGAGTTTCACACACGT
CGACAAGTCATTGGTTGATGGTACCGTACGCACATGTCAGACGACACGAA
TGCTGCAACATCTCGAGGGAAGGTAAATTGATGTGCTATCTTTACTGCGC
TAGCATTTCCTTTTGAAACCGGCGCAGGCACACGAAACGCATGCACAACA
GTAGTGGTATACCGCCTGGGTGGTATACCGCCTGGGGGGCCCGCACTATA
GTTTGTCAACCTTTTTCGGGATTGCGAAAGCTGTACAATAGTACACAGTA
GTTTTGGCTTCCGAGGAGACTAAGCTAGGCAGATCAGTAGCGCTGAAGAA
AGCAAGGGAAATGGGTGTGTGTAGGGCTCGAGACACAGAAAATATGTTCC
AGAGATACCCTGAGGGAGAATCAGGATTTTGGGGAGTTGGGAAATTCCTT
CGAACACCCCCGGGTACTCAGCCGGCACCTCAGATCATCGCTGCAGCCAT
CCAGCCAAACCTAAGCCATCAAAACAGACTGAAATCCATAGTATTATGCC
CTACTGTGGTGGTACTGGGTTAGGTTGAGCCTCTTTGTTTGCGGTCTGTA
CCTGGTGCGAGGGTCAAACGACACCCAAAATTCCGGTTCTCACTGGCTGC
ACCGCTGCGTTTTGGTGGGCGTAATCAATTGACCGAATTGTCTACGACGT
AAAACGGGCATCGGAGGCATACATCACTGTCACCATCTTTTCGTATCGCC
CGTCCATTACTGTGTTCGAGCTTGATAGTGCAAGAAAACGGTGATCGCGT
GGGAGCATATTTTCACACAATTTCCAGGTGGAGACCAGGTTCTCTCTCCG
AGGGGAGGCGTTTCGTGAGTGGTTGTTCGAGGGGTGTTATCTTGTGTGGT
ATCGGCACATATTCTCTGGAAGCAATTTTCGCGAAGGCTGATATCAATTG
ACCAATAAAGGTTCGCGACCACCGCAGCGATATTTCCTCTTACAGCTGTC
TACTGCTCAGTAGTCGAACCGTCAGAATTTATATTCGAGCTCCCCGAGCC
GAGATATATCTGCCAAAGCACGTGCCCCGAGCGGTCCAGTTTGTATCGGA
GTGGTATATGGAAGAGTTCTGCGAACCGTATCACATCTGCCGAGCCCTCT
CTAGGGTAATTATCTGCTGGCCCCCCCAATGTAACAACATTGTGCACACG
AAACGCACGCACGCGGCTGCCGCTGCGTCCTCCAGCAATAGGGTTAATCT
GATCCCGACTCCACGGAGGATCTACCCGTTTCCCTCTCCCATCGGCCACA
CGGGCAACCCGTGCACCCCTAGGGTTGAGTTTTAAACAAGTTGTGGGTTT
GCCGACCTAAGCTGTACAACAGCGGTGACCGTCGCTCTCTAAAATATGTC
AACTCGTCCAGCTGTCTCTCTCTCTCTCTTGCAACAGCAGTGACCGCCCC
TGCTTGAGGTCGCCGTCAACCTGACCAAGCTCTCTCTCCCTCTGCCTCTC
TCTCCCTCTCTCTCCCTCTCTCTGCTTCCCTTACTACTATCTCTAACTCT
CCACCCCCAATGCCTGCCTACCGACACGTCCAGGCCCCCGCTTTGCCTCC
CCGTTCTGGGGCTTCCGCCGGGATAACCGACCATGACCCCCCGGGAGGGT
TGAGCGCTGCAACGGTCGCACCCGGCGCTACCGCGGCCGGCGGCTTTCAG
AGAACGACCTCGGCCCGTTCCCCGACTGCGGCGGCAGGAGTCGTTGCTGG
ACGAGGCGCTTCTGCCGCATCCTCCACCGTCGCTTCATCGTCCCGCGGCA
GCAGCACCAGCGGCGGCGGTAGCGTGGCCTCCAGAGGGGCAGGAGGTGGA
GTTGGCACGAGAAACTCCCGACGGGCAGACTCTTGGACGGGGGCGATGGA
TGAGGGGCCAGGTGGCGCGAACGACAGGGAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig565:1652..4284-

>mRNA_L-elsbetiae_contig565.13989.1 ID=mRNA_L-elsbetiae_contig565.13989.1|Name=mRNA_L-elsbetiae_contig565.13989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig565:1652..4284- (Laminarionema elsbetiae ELsaHSoW15)
ACAGCAAGCGTGGAGCGCAAGCGTGGGGGAAGGATGCCTCAAGGTCCCGG
ATACCTGGCGCTTCCGACGATAGATTCTGTGGGATCAGTAGATAGCCCTG
GTGGAAACAAAGATCAGCCACCGCGAGTGACAGCAAGCGTGGAGCGCAAG
CGTGGGGGAAGGATGCCTCAAGGTCCCGGATACCTGGCGCTTCCGACGAT
AGATTCTGTGGGATCAGTAGATAGCCCTGGTGGAAACAAAGATCAGCCAC
CGCGAGTGGCCCCCGCTTTGCCTCCCCGTTCTGGGGCTTCCGCCGGGATA
ACCGACCATGACCCCCCGGGAGGGTTGAGCGCTGCAACGGTCGCACCCGG
CGCTACCGCGGCCGGCGGCTTTCAGAGAACGACCTCGGCCCGTTCCCCGA
CTGCGGCGGCAGGAGTCGTTGCTGGACGAGGCGCTTCTGCCGCATCCTCC
ACCGTCGCTTCATCGTCCCGCGGCAGCAGCACCAGCGGCGGCGGTAGCGT
GGCCTCCAGAGGGGCAGGAGGTGGAGTTGGCACGAGAAACTCCCGACGGG
CAGACTCTTGGACGGGGGCGATGGATGAGGGGCCAGGTGGCGCGAACGAC
AGGGAGGCCCCCGCTTTGCCTCCCCGTTCTGGGGCTTCCGCCGGGATAAC
CGACCATGACCCCCCGGGAGGGTTGAGCGCTGCAACGGTCGCACCCGGCG
CTACCGCGGCCGGCGGCTTTCAGAGAACGACCTCGGCCCGTTCCCCGACT
GCGGCGGCAGGAGTCGTTGCTGGACGAGGCGCTTCTGCCGCATCCTCCAC
CGTCGCTTCATCGTCCCGCGGCAGCAGCACCAGCGGCGGCGGTAGCGTGG
CCTCCAGAGGGGCAGGAGGTGGAGTTGGCACGAGAAACTCCCGACGGGCA
GACTCTTGGACGGGGGCGATGGATGAGGGGCCAGGTGGCGCGAACGACAG
GGAG
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