mRNA_L-elsbetiae_contig564.13981.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig564.13981.1
Unique NamemRNA_L-elsbetiae_contig564.13981.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig564.13981.1 vs. uniprot
Match: A0A6H5JC88_9PHAE (PhoLip_ATPase_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC88_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 2.270e-39
Identity = 75/80 (93.75%), Postives = 79/80 (98.75%), Query Frame = 2
Query:    2 QIIGSSAIEDKLQAGVAGAVSDLMAAGIKIWVLTGDKEETAINIAVACQLLWTEAKMHRTVINLKGTGQSETDEIKEALE 241
            QI+GSSAIEDKLQAGVAGAVSDLMAAGIKIWVLTGDKEETAINIAVACQLLWTEA+MHRTVI LKGTG+SET+EIKEALE
Sbjct:  929 QILGSSAIEDKLQAGVAGAVSDLMAAGIKIWVLTGDKEETAINIAVACQLLWTEARMHRTVIKLKGTGKSETEEIKEALE 1008          
BLAST of mRNA_L-elsbetiae_contig564.13981.1 vs. uniprot
Match: D7G0C1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C1_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.200e-34
Identity = 73/96 (76.04%), Postives = 79/96 (82.29%), Query Frame = 2
Query:    2 QIIGSSAIEDKLQAGVAGAVSDLMAAGIKIWVLTGDK----------------EETAINIAVACQLLWTEAKMHRTVINLKGTGQSETDEIKEALE 241
            +I+GSSAIEDKLQAGVAGAVSDLMAAGIKIWVLTGDK                EETAINIAVACQLLWTEA+M+RTVI LKGTG+SET+EIKEALE
Sbjct:  947 EILGSSAIEDKLQAGVAGAVSDLMAAGIKIWVLTGDKSSAQPYPTVADCVSGREETAINIAVACQLLWTEARMYRTVIKLKGTGESETEEIKEALE 1042          
BLAST of mRNA_L-elsbetiae_contig564.13981.1 vs. uniprot
Match: A0A836CFX1_9STRA (Phospholipid-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFX1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.180e-24
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 2
Query:    2 QIIGSSAIEDKLQAGVAGAVSDLMAAGIKIWVLTGDKEETAINIAVACQLLWTEAKMHRTVINLKGTGQS 211
            +++GS+AIEDKLQ GV GA++ +MAAGIK+WVLTGDKEETAINI VACQL+W+E +M R VINLKG   S
Sbjct:  771 ELLGSTAIEDKLQEGVPGAIASIMAAGIKVWVLTGDKEETAINIGVACQLIWSEERMDRLVINLKGANGS 840          
BLAST of mRNA_L-elsbetiae_contig564.13981.1 vs. uniprot
Match: A0A6H5KPG5_9PHAE (P-type phospholipid transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPG5_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.440e-18
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 2
Query:    2 QIIGSSAIEDKLQAGVAGAVSDLMAAGIKIWVLTGDKEETAINIAVACQLLWTEAKMHRTVINL----KGTGQSETDEIKEALE 241
            Q++G +AIEDKLQ GV   V  L  A +K+W+LTGDKEETAINI VACQLL  E +M R +IN+    + TG  + +E+K+ LE
Sbjct:  843 QLLGCTAIEDKLQDGVGACVDALQRARVKVWILTGDKEETAINIGVACQLLGPEEQMERIIINMDPQARHTGCQDVEEVKDRLE 926          
BLAST of mRNA_L-elsbetiae_contig564.13981.1 vs. uniprot
Match: D7FU18_ECTSI (Phospholipid-transporting ATPase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU18_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 2.380e-17
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 2
Query:    2 QIIGSSAIEDKLQAGVAGAVSDLMAAGIKIWVLTGDKEETAINIAVACQLLWTEAKMHRTVINLKG-TGQSETDEIKEALE 241
            +++G +AIEDKLQ GV   V  L  A +K+W+LTGDKEETAINI VACQLL  E +M R ++N+   TG  + +E+K+ LE
Sbjct:  892 RLLGCTAIEDKLQDGVGTCVDALQRARVKVWMLTGDKEETAINIGVACQLLGPEEQMERIIVNMDPQTGCQDVEEVKDRLE 972          
BLAST of mRNA_L-elsbetiae_contig564.13981.1 vs. uniprot
Match: D7FU89_ECTSI (Phospholipid-transporting ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU89_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 6.000e-17
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 2
Query:    5 IIGSSAIEDKLQAGVAGAVSDLMAAGIKIWVLTGDKEETAINIAVACQLLWTEAKMHRTVINLK 196
            +IG +AIEDKLQ GV   +  ++  G+ +WV+TGDKEETAINI VACQLLW E +M R +IN K
Sbjct:  740 LIGGTAIEDKLQTGVGETIEKMVRGGMVVWVITGDKEETAINIGVACQLLWAEDRMDRCIINTK 803          
BLAST of mRNA_L-elsbetiae_contig564.13981.1 vs. uniprot
Match: K8YX07_NANGC (Aminophospholipid-transporting P-type atpase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YX07_NANGC)

HSP 1 Score: 79.0 bits (193), Expect = 9.350e-17
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 2
Query:    2 QIIGSSAIEDKLQAGVAGAVSDLMAAGIKIWVLTGDKEETAINIAVACQLLWTEAKMHRTVIN 190
            +++G++AIEDKLQ GV   + DL  AGIK+W+LTGDKEETA+NI VAC LL    KM R  IN
Sbjct:    9 ELLGATAIEDKLQEGVPETIHDLTRAGIKVWMLTGDKEETAVNIGVACNLLEHSTKMRRISIN 71          
BLAST of mRNA_L-elsbetiae_contig564.13981.1 vs. uniprot
Match: A0A7S4DCU9_HETAK (Phospholipid-transporting ATPase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCU9_HETAK)

HSP 1 Score: 82.0 bits (201), Expect = 2.030e-16
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 2
Query:    2 QIIGSSAIEDKLQAGVAGAVSDLMAAGIKIWVLTGDKEETAINIAVACQLLW-TEAKMHRTVINL 193
            +++G +AIEDKLQ GV   +SDL  AGI IWVLTGDKEETAINIAVACQL+  +E  M R VINL
Sbjct:   83 ELLGVTAIEDKLQDGVGQTISDLSKAGIAIWVLTGDKEETAINIAVACQLILPSEEHMRRIVINL 147          
BLAST of mRNA_L-elsbetiae_contig564.13981.1 vs. uniprot
Match: D0MZV4_PHYIT (Phospholipid-transporting ATPase n=13 Tax=Phytophthora TaxID=4783 RepID=D0MZV4_PHYIT)

HSP 1 Score: 81.6 bits (200), Expect = 2.860e-16
Identity = 43/71 (60.56%), Postives = 54/71 (76.06%), Query Frame = 2
Query:    2 QIIGSSAIEDKLQAGVAGAVSDLMAAGIKIWVLTGDKEETAINIAVACQLLWTEAKMHRTVINLKGTGQSE 214
            +++G++AIEDKLQ+GV  A+++L  AGIKIWVLTGDKEETAINI  ACQL+  E K+   VIN K    SE
Sbjct:  669 ELLGATAIEDKLQSGVPDAIANLACAGIKIWVLTGDKEETAINIGFACQLVTNEMKLF--VINSKNAPTSE 737          
BLAST of mRNA_L-elsbetiae_contig564.13981.1 vs. uniprot
Match: A0A485LS81_9STRA (Phospholipid-transporting ATPase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS81_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.860e-16
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    2 QIIGSSAIEDKLQAGVAGAVSDLMAAGIKIWVLTGDKEETAINIAVACQLLWTEAKMHRTVINLKGTGQSETDEIKEALE 241
            +++G++AIEDKLQ GV  A++ L  A IK+W+LTGDKEETAINI  ACQLL  E ++    I + G    + DEI+E LE
Sbjct:  686 EVLGATAIEDKLQEGVPDAIAKLREASIKVWMLTGDKEETAINIGFACQLLHLEMEL----IVISGNNHEDIDEIRETLE 761          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig564.13981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JC88_9PHAE2.270e-3993.75PhoLip_ATPase_N domain-containing protein n=1 Tax=... [more]
D7G0C1_ECTSI1.200e-3476.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CFX1_9STRA2.180e-2470.00Phospholipid-transporting ATPase n=1 Tax=Tribonema... [more]
A0A6H5KPG5_9PHAE1.440e-1853.57P-type phospholipid transporter n=1 Tax=Ectocarpus... [more]
D7FU18_ECTSI2.380e-1753.09Phospholipid-transporting ATPase, putative n=1 Tax... [more]
D7FU89_ECTSI6.000e-1759.38Phospholipid-transporting ATPase n=1 Tax=Ectocarpu... [more]
K8YX07_NANGC9.350e-1760.32Aminophospholipid-transporting P-type atpase n=1 T... [more]
A0A7S4DCU9_HETAK2.030e-1667.69Phospholipid-transporting ATPase (Fragment) n=1 Ta... [more]
D0MZV4_PHYIT2.860e-1660.56Phospholipid-transporting ATPase n=13 Tax=Phytopht... [more]
A0A485LS81_9STRA2.860e-1652.50Phospholipid-transporting ATPase n=1 Tax=Aphanomyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig564contigL-elsbetiae_contig564:6440..7677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size247
Cds size246
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816599.9097557-CDS-L-elsbetiae_contig564:6439..65501622816599.9097557-CDS-L-elsbetiae_contig564:6439..6550Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig564 6440..6550 +
1691683675.8976214-CDS-L-elsbetiae_contig564:6439..65501691683675.8976214-CDS-L-elsbetiae_contig564:6439..6550Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig564 6440..6550 +
1622816599.929252-CDS-L-elsbetiae_contig564:7542..76771622816599.929252-CDS-L-elsbetiae_contig564:7542..7677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig564 7543..7677 +
1691683675.9070325-CDS-L-elsbetiae_contig564:7542..76771691683675.9070325-CDS-L-elsbetiae_contig564:7542..7677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig564 7543..7677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig564.13981.1prot_L-elsbetiae_contig564.13981.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig564 6440..7677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig564.13981.1

>prot_L-elsbetiae_contig564.13981.1 ID=prot_L-elsbetiae_contig564.13981.1|Name=mRNA_L-elsbetiae_contig564.13981.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
SDNRVERDRGQASSRRRRRRVRPHGGGHQDLGLDRRQGGNRDQHCGGLPA
AVDRGEDAPHGDKPERDGTVGDGRDKRGAGR*
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mRNA from alignment at L-elsbetiae_contig564:6440..7677+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig564.13981.1 ID=mRNA_L-elsbetiae_contig564.13981.1|Name=mRNA_L-elsbetiae_contig564.13981.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1238bp|location=Sequence derived from alignment at L-elsbetiae_contig564:6440..7677+ (Laminarionema elsbetiae ELsaHSoW15)
TCAGATAATCGGGTCGAGCGCGATCGAGGACAAGCTTCAAGCAGGCGTCG CCGGCGCCGTGTCCGACCTCATGGCGGCGGGCATCAAGATCTGGGTCTTG ACCGGAGACAAGTGAGATTCACGGTTCAGAAAAAGAGATGTTGAATTCTT CGGACATTTTAGGTGGTTTTTTCTACTCGGCCGGGCCGATATGACGTCAC TATATGGAATACCGGTTGAACCCCACGGAGTCCCTTCTCGAACGTGGGCT AGGTTCCGTTTTCGATTATCTGATTTATCTTTCAAAAGAGAGCCGATCGA TCTGGGTCTTGACCGGAGACAAGTGAGGTTTACCGTAGTAGGTGACACAA GATATCACACCCCTCTGGACATATTTTCAAAGCTCGATTCCTCCCCAGCA AGAATAGCGACAGCGCCAGAAGGGGGCTGCGTTGGAAAGATCCAGCCGAG GGCTGTCCGAAAATGTGTCGTTTCGTGCTGGCACCCCTTCTTCGTCGTTA CGGAGTAATGGGGCTCTAGAAGTCCGTCCAAGGGGGGGGGGTGTTATATT GTGTCACCTTCGGTACGGTTCAGCAAAATAGAGCCGGTCGATGTGGGTGG GCGTGGGAGGGACCCATCGTCTGCGACATATGTAGCCCCGGGGCTGGTCG TGTAAACGTTCTACGCGTGTACCGGCATCATCAGTTCAGGTTTCAGGTTT CATTTACCCTTGAAGAAACCACCGAAAGGACATGTTTTCTAGTAAATATA ACACGCTCCTTGCTGTCTGCGTACCTCTCCGACGGGATGCAAACAAAACG GCTTGCTCCGGATGTGAGGCACACAAACGAAAATATGGGTACATTTCTGT TGGAAGGGCTAGCTGTTGAGCACTCGAAGTAGGGTTGTTCGTGTTGGCCA CGATGAAGCCTTCTTTCGGCCTCGTTCGGGAGGACTAGACTGAGAGCGGG CAATGAAATGAAGACTGGGGGGGACTTCAGGGATGATAAAAAAACAAAAA GGTTCAAAACTTGCATCTGTCTTCTCTTCGGTTATTTACGAAGCCCCCCC ACAACGAGCGAGCTAAAACCAACCTTGCGCCGTCTCCTCTTCGGTTTCGA TAGGGAGGAAACCGCGATCAACATTGCGGTGGCTTGCCAGCTGCTGTGGA CCGAGGCGAAGATGCACCGCACGGTGATAAACCTGAAAGGGACGGGACAG TCGGAGACGGACGAGATAAAAGAGGCGCTGGAAGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig564:6440..7677+

>mRNA_L-elsbetiae_contig564.13981.1 ID=mRNA_L-elsbetiae_contig564.13981.1|Name=mRNA_L-elsbetiae_contig564.13981.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig564:6440..7677+ (Laminarionema elsbetiae ELsaHSoW15)
TCAGATAATCGGGTCGAGCGCGATCGAGGACAAGCTTCAAGCAGGCGTCG
CCGGCGCCGTGTCCGACCTCATGGCGGCGGGCATCAAGATCTGGGTCTTG
ACCGGAGACAATCAGATAATCGGGTCGAGCGCGATCGAGGACAAGCTTCA
AGCAGGCGTCGCCGGCGCCGTGTCCGACCTCATGGCGGCGGGCATCAAGA
TCTGGGTCTTGACCGGAGACAAGGAGGAAACCGCGATCAACATTGCGGTG
GCTTGCCAGCTGCTGTGGACCGAGGCGAAGATGCACCGCACGGTGATAAA
CCTGAAAGGGACGGGACAGTCGGAGACGGACGAGATAAAAGAGGCGCTGG
AAGGTGAGGAGGAAACCGCGATCAACATTGCGGTGGCTTGCCAGCTGCTG
TGGACCGAGGCGAAGATGCACCGCACGGTGATAAACCTGAAAGGGACGGG
ACAGTCGGAGACGGACGAGATAAAAGAGGCGCTGGAAGGTGA
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