mRNA_L-elsbetiae_contig5637.13978.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5637.13978.1
Unique NamemRNA_L-elsbetiae_contig5637.13978.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5637.13978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5637contigL-elsbetiae_contig5637:333..903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size571
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5637.13978.1prot_L-elsbetiae_contig5637.13978.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5637 468..773 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816599.7529016-UTR-L-elsbetiae_contig5637:332..4671622816599.7529016-UTR-L-elsbetiae_contig5637:332..467Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5637 333..467 +
1691683675.7988136-UTR-L-elsbetiae_contig5637:332..4671691683675.7988136-UTR-L-elsbetiae_contig5637:332..467Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5637 333..467 +
1622816599.780587-UTR-L-elsbetiae_contig5637:773..9031622816599.780587-UTR-L-elsbetiae_contig5637:773..903Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5637 774..903 +
1691683675.8200471-UTR-L-elsbetiae_contig5637:773..9031691683675.8200471-UTR-L-elsbetiae_contig5637:773..903Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5637 774..903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816599.7697284-CDS-L-elsbetiae_contig5637:467..7731622816599.7697284-CDS-L-elsbetiae_contig5637:467..773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5637 468..773 +
1691683675.8097382-CDS-L-elsbetiae_contig5637:467..7731691683675.8097382-CDS-L-elsbetiae_contig5637:467..773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5637 468..773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5637.13978.1

>prot_L-elsbetiae_contig5637.13978.1 ID=prot_L-elsbetiae_contig5637.13978.1|Name=mRNA_L-elsbetiae_contig5637.13978.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MWLSLLVYLILTVFSPGMRVVFELVVAYIVRRRRLLYSRPPLCRSISLPP
GSSAGGTPTTVDLQLSKAATYVYLWPVLPLYDFLRVRHCNGEGLQHQYSA
F*
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mRNA from alignment at L-elsbetiae_contig5637:333..903+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5637.13978.1 ID=mRNA_L-elsbetiae_contig5637.13978.1|Name=mRNA_L-elsbetiae_contig5637.13978.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=571bp|location=Sequence derived from alignment at L-elsbetiae_contig5637:333..903+ (Laminarionema elsbetiae ELsaHSoW15)
CGACCAGGTTTTGTTGATCGTGTGCGACTGTCGTGCGTACGGTGCGATGT
TTAGCTCTTCCAGTGGCACGATGATGGACGTGGGTGCCTTGTGTATCTGC
CGTGCAAGTCCAGGTTTTAGACTGACACATCTGCCATGTGGCTCTCTTTG
TTGGTGTATTTGATCTTAACTGTATTCTCGCCCGGAATGCGTGTTGTTTT
TGAGTTGGTTGTAGCCTACATAGTTCGAAGGCGCCGTTTGTTGTATTCGC
GGCCGCCCCTTTGTAGATCGATATCTCTCCCTCCAGGGAGCTCTGCTGGC
GGCACTCCTACTACCGTAGATTTGCAACTGAGTAAAGCGGCTACCTATGT
TTATCTTTGGCCCGTGTTGCCCCTCTACGATTTTCTGCGGGTTCGGCACT
GCAATGGCGAAGGGTTGCAGCATCAATACTCAGCATTTTAGGTGACAGCC
AGTGAAAATACGTGGCGGATCGTGCAATATTTGTGTTTTGCTCGTGCAAT
ATTTGTGTTTTGCTCTGTGAGTGTGTGTTTGTGTGTGTGTGTGTGTGTTT
TGGTCCCATTTATTCGGGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5637:333..903+

>mRNA_L-elsbetiae_contig5637.13978.1 ID=mRNA_L-elsbetiae_contig5637.13978.1|Name=mRNA_L-elsbetiae_contig5637.13978.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig5637:333..903+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGCTCTCTTTGTTGGTGTATTTGATCTTAACTGTATTCTCGCCCGG
AATGCGTGTTGTTTTTGAGTTGGTTGTAGCCTACATAGTTCGAAGGCGCC
GTTTGTTGTATTCGCGGCCGCCCCTTTGTAGATCGATATCTCTCCCTCCA
GGGAGCTCTGCTGGCGGCACTCCTACTACCGTAGATTTGCAACTGAGTAA
AGCGGCTACCTATGTTTATCTTTGGCCCGTGTTGCCCCTCTACGATTTTC
TGCGGGTTCGGCACTGCAATGGCGAAGGGTTGCAGCATCAATACTCAGCA
TTTTAGATGTGGCTCTCTTTGTTGGTGTATTTGATCTTAACTGTATTCTC
GCCCGGAATGCGTGTTGTTTTTGAGTTGGTTGTAGCCTACATAGTTCGAA
GGCGCCGTTTGTTGTATTCGCGGCCGCCCCTTTGTAGATCGATATCTCTC
CCTCCAGGGAGCTCTGCTGGCGGCACTCCTACTACCGTAGATTTGCAACT
GAGTAAAGCGGCTACCTATGTTTATCTTTGGCCCGTGTTGCCCCTCTACG
ATTTTCTGCGGGTTCGGCACTGCAATGGCGAAGGGTTGCAGCATCAATAC
TCAGCATTTTAG
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