mRNA_L-elsbetiae_contig5630.13971.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5630.13971.1 vs. uniprot
Match: D8LBK9_ECTSI (OmpA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK9_ECTSI) HSP 1 Score: 234 bits (596), Expect = 2.100e-68 Identity = 125/142 (88.03%), Postives = 135/142 (95.07%), Query Frame = 1 Query: 13 DGALVVLMLGSPEVDSGTGNTVFSLSAEIEVPDLIELNST-LRVEVSTNSSVILASASLEESMTSKEWLRWPYASELPGSHMVAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAPQAVTSTDTAFFSFACALPGAEAAPS 435 +GALVVL+LGSPEVDSGTG+TVFSLSAE+EVPDLI LNST L VEVSTNSSV+LASA+LEE++TSKEWLRWPYASELPGSH VAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAPQAVT+ DTAFFSFACALP +EA PS Sbjct: 286 EGALVVLVLGSPEVDSGTGDTVFSLSAEVEVPDLIGLNSTSLVVEVSTNSSVLLASAALEEAITSKEWLRWPYASELPGSHTVAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAPQAVTAVDTAFFSFACALPESEATPS 427
BLAST of mRNA_L-elsbetiae_contig5630.13971.1 vs. uniprot
Match: A0A6H5K857_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K857_9PHAE) HSP 1 Score: 143 bits (360), Expect = 1.220e-36 Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 1 Query: 208 EWLRWPYASELPGSHMVAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAPQAVTSTDTAFFSFACALPGAEAAPSP 438 EWLRWPYASELPGSH VAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAPQAVT+ DTAFFSFACALP +EA PSP Sbjct: 21 EWLRWPYASELPGSHTVAIAAVDEAGNVDPEPAVWTWSVDARPRTSLTSAPQAVTAVDTAFFSFACALPESEATPSP 97
BLAST of mRNA_L-elsbetiae_contig5630.13971.1 vs. uniprot
Match: F8CLT6_MYXFH (OmpA domain-containing protein n=3 Tax=Myxococcaceae TaxID=31 RepID=F8CLT6_MYXFH) HSP 1 Score: 58.9 bits (141), Expect = 3.280e-7 Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 1 Query: 223 PYASELPGSHMVAIAAVDEAGNVDPEPAVWTWSVDAR-PRTSLTSAPQAVTSTDTAFFSF 399 PY G H +A+ AVD AGNVDP PAV TW+VDA P T++ S P AVT+ TA F F Sbjct: 849 PYTGLGDGEHTLAVYAVDAAGNVDPTPAVRTWTVDATAPETTIVSGPPAVTNATTATFDF 908
BLAST of mRNA_L-elsbetiae_contig5630.13971.1 vs. uniprot
Match: A0A6H5K543_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K543_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 2.950e-6 Identity = 27/31 (87.10%), Postives = 31/31 (100.00%), Query Frame = 1 Query: 13 DGALVVLMLGSPEVDSGTGNTVFSLSAEIEV 105 +GALVVL+LGSPEVDSGTG+TVFSLSAE+EV Sbjct: 318 EGALVVLVLGSPEVDSGTGDTVFSLSAEVEV 348
BLAST of mRNA_L-elsbetiae_contig5630.13971.1 vs. uniprot
Match: A0A2V6VDH4_9BACT (Ig-like domain-containing protein (Fragment) n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6VDH4_9BACT) HSP 1 Score: 55.8 bits (133), Expect = 3.620e-6 Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 1 Query: 226 YASELPGSHMVAIAAVDEAGNVDPEPAVWTWSVDAR-PRTSLTSAPQAVTSTDTAFFSFACALPG 417 Y++ GSH + AVD AGNVDP PA +TW++D P T++T+AP A+T++ +A FSF G Sbjct: 806 YSALAAGSHTFQVRAVDTAGNVDPTPASFTWTIDTTAPDTTITAAPPALTNSTSASFSFTATKTG 870
BLAST of mRNA_L-elsbetiae_contig5630.13971.1 vs. uniprot
Match: A0A0H4X958_9DELT (Internalin, putative n=1 Tax=Myxococcus hansupus TaxID=1297742 RepID=A0A0H4X958_9DELT) HSP 1 Score: 55.5 bits (132), Expect = 5.210e-6 Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 1 Query: 244 GSHMVAIAAVDEAGNVDPEPAVWTWSVD-ARPRTSLTSAPQAVTSTDTAFFSFACALPG 417 G+HM+ + AVD AGNVDP PA +TW+VD A P T + S P TS TA F F + PG Sbjct: 1080 GAHMLMVRAVDAAGNVDPTPAEYTWTVDTAPPDTLVVSGPATPTSQSTASFEFESSEPG 1138
BLAST of mRNA_L-elsbetiae_contig5630.13971.1 vs. uniprot
Match: UPI001F08862D (Ig-like domain-containing protein n=1 Tax=Pyxidicoccus caerfyrddinensis TaxID=2709663 RepID=UPI001F08862D) HSP 1 Score: 55.1 bits (131), Expect = 7.150e-6 Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1 Query: 244 GSHMVAIAAVDEAGNVDPEPAVWTWSVDARPR-TSLTSAPQAVTSTDTAFFSF 399 G+H +A+ AVD AGNVDP PA + W+VD P TS+ S P AVTS+ +A F F Sbjct: 674 GNHTLAVRAVDAAGNVDPTPATYAWTVDLTPPDTSIVSGPAAVTSSTSATFDF 726
BLAST of mRNA_L-elsbetiae_contig5630.13971.1 vs. uniprot
Match: UPI001F50C2B8 (Ig-like domain-containing protein n=2 Tax=Pyxidicoccus sp. SCPEA002 TaxID=2813578 RepID=UPI001F50C2B8) HSP 1 Score: 55.1 bits (131), Expect = 7.150e-6 Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 1 Query: 244 GSHMVAIAAVDEAGNVDPEPAVWTWSVDARPR-TSLTSAPQAVTSTDTAFFSFA---------CALPGA 420 G+H +A+ AVD AGNVDP PA ++W++D P T++ S P AVTS+ +A F F+ C+L GA Sbjct: 871 GNHTLAVRAVDAAGNVDPTPATYSWTIDTTPPDTAIVSGPSAVTSSTSATFDFSSPDSPVTYECSLDGA 939
BLAST of mRNA_L-elsbetiae_contig5630.13971.1 vs. uniprot
Match: UPI001F1BC852 (Ig-like domain-containing protein n=1 Tax=Myxococcus stipitatus TaxID=83455 RepID=UPI001F1BC852) HSP 1 Score: 54.7 bits (130), Expect = 9.650e-6 Identity = 34/75 (45.33%), Postives = 42/75 (56.00%), Query Frame = 1 Query: 226 YASELPGSHMVAIAAVDEAGNVDPEPAVWTWSVDA-RPRTSLTSAPQAVTSTDTAFFSFA---------CALPGA 420 Y S G H +A+ AVD AGNVDP PA +TW+VD P T++ S P T++ A F FA CAL GA Sbjct: 669 YTSLSQGPHTLAVRAVDTAGNVDPTPATYTWTVDTVAPDTTIVSGPSGTTASANASFGFASNEAGVTYQCALDGA 743
BLAST of mRNA_L-elsbetiae_contig5630.13971.1 vs. uniprot
Match: UPI001F0823DD (Ig-like domain-containing protein n=1 Tax=Pyxidicoccus trucidator TaxID=2709662 RepID=UPI001F0823DD) HSP 1 Score: 53.5 bits (127), Expect = 2.430e-5 Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1 Query: 244 GSHMVAIAAVDEAGNVDPEPAVWTWSVD-ARPRTSLTSAPQAVTSTDTAFFSF 399 G+H +A+ AVD AGNVDP PA + W+VD A P T++ S P VT + TA F F Sbjct: 709 GNHTLAVRAVDAAGNVDPTPATYAWTVDTALPDTTIVSGPSGVTVSTTATFDF 761 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5630.13971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5630.13971.1 >prot_L-elsbetiae_contig5630.13971.1 ID=prot_L-elsbetiae_contig5630.13971.1|Name=mRNA_L-elsbetiae_contig5630.13971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=152bp VATGDGALVVLMLGSPEVDSGTGNTVFSLSAEIEVPDLIELNSTLRVEVSback to top mRNA from alignment at L-elsbetiae_contig5630:792..4672- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5630.13971.1 ID=mRNA_L-elsbetiae_contig5630.13971.1|Name=mRNA_L-elsbetiae_contig5630.13971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3881bp|location=Sequence derived from alignment at L-elsbetiae_contig5630:792..4672- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5630:792..4672- >mRNA_L-elsbetiae_contig5630.13971.1 ID=mRNA_L-elsbetiae_contig5630.13971.1|Name=mRNA_L-elsbetiae_contig5630.13971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig5630:792..4672- (Laminarionema elsbetiae ELsaHSoW15)back to top |