mRNA_L-elsbetiae_contig5629.13969.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5629.13969.1
Unique NamemRNA_L-elsbetiae_contig5629.13969.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5629.13969.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 399 bits (1026), Expect = 6.680e-133
Identity = 199/248 (80.24%), Postives = 214/248 (86.29%), Query Frame = 3
Query:  132 ACAALSASANALTVVTPSSDLDVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGEWVTALCPYGENGCPDNEGDYDIVMPEPMMGTSGTGYKVRVMDVSDESEVDCSDAFTLIASPEAPFSSED--YSLTVTSPAAGDMAKAGEEYTVEFDYNNGVGSRVDRFDIDLYMADGTGDCGTYVTSICDKESIGCKDSMGDYDVEIPEDTPAGEYSIRVGRFEDKTLFGCSGTFMVEG-DDEDMSMSF 866
            ACA L A ANAL VVTPS+DL VVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCG+WVTALCPYGE GCPDNEGDYDIVMPEPM G S +GYKVRVMDVSDE  +DCSDAF L+AS +AP +  +  Y LTVTSPA GD A+AGEEYTVEFDY+NGVGS+VDRF IDLYMADG GDCGTYVTSICDK SIGCKDSMGDYDVEIP DT AG+Y IRVGRFED+ L+GCSGTF + G DDE MS  F
Sbjct:   10 ACAMLGA-ANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDDESMSYDF 256          
BLAST of mRNA_L-elsbetiae_contig5629.13969.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 356 bits (913), Expect = 9.690e-116
Identity = 182/259 (70.27%), Postives = 203/259 (78.38%), Query Frame = 3
Query:  132 ACAALSASANALTVVTPSSDLDVVADRTYTVEWTGADS-GRFEIDLYHCGSMCMEDSCGEWVTALCPYGENGCPDNEGDYDIVMPEPMMGTSGTGYKVRVMDVSDESEVDCSDAFTLIASPEAPFSSEDY--SLTVTSPAAGDMAKAGEEYTVEFDYNNGVGSRVDRFDIDLYMADGTGDCGTYVTSICDKESIGCKDSMGDYDVEIPEDTPAGEYSIRVGRFEDKTLFGCSGTFMVE-GDDED--------MSMSFRF 872
            AC  L A ANAL V TPS  L V+ADRTYTVEWTG  S  RFEIDLY+CGSMCMED CG+WVTALCPYGE+GCPDNEGDYDIVMPEPM+GTSG+GYKVRV D+ DE + DCSD F L+AS EAP   ++   +L VTSPA+GD+A    EYTVEFDY+NGVGS VDRF IDLY ADG GDCGTYV SICDK +IGCKDSMGDYDVEIP DT AGEY IRV RFED +L+ CSGTF +E GDD D         S+S+RF
Sbjct:   10 ACGMLGA-ANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDSDXXXXXEDAFSLSYRF 267          
BLAST of mRNA_L-elsbetiae_contig5629.13969.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 331 bits (848), Expect = 3.920e-106
Identity = 167/250 (66.80%), Postives = 197/250 (78.80%), Query Frame = 3
Query:  132 ACAALSASANALTVVTPSSDLDVVADRTYTVEWTGADSG-RFEIDLYHCGSMCMEDSCGEWVTALCPYGENGCPDNEGDYDIVMPEPMMGTSGTGYKVRVMDVSDESEVDCSDAFTLIASPEAPFSSEDYS--LTVTSPAAGDMAKAGEEYTVEFDYNNGVGSRVDRFDIDLYMADGTGDCGTYVTSICDKESIGCKDSMGDYDVEIPEDTPAGEYSIRVGRFEDKTLFGCSGTFMVEGDDEDMSMSFRF 872
            AC  L   A+AL VVTP++   VV+ R YTVEW+G  S  RFEIDLY+C SMCMED CGEWVTALCPYGE+GCPDNEGDYDIVMPEPM GTSG+GYKVRV DV DE   DCSD F L+A  +AP +S+     +TVTSP+ GD A+AGEEYTVEFDY+NG+GS V RF IDLY A G+GDCGT++ ++CDK +IGCKDSMGDYDVEIPED  AG Y+IRVG FED++++GCS  F + G D D SMS+RF
Sbjct:   11 ACGMLGV-ASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGAD-DSSMSYRF 258          
BLAST of mRNA_L-elsbetiae_contig5629.13969.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 327 bits (837), Expect = 1.510e-104
Identity = 159/241 (65.98%), Postives = 190/241 (78.84%), Query Frame = 3
Query:  153 SANALTVVTPSSDLDVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGEWVTALCPYGENGCPDNEGDYDIVMPEPMMGTSGTGYKVRVMDVSDESEVDCSDAFTLIASPEAPFSSE-DYSLTVTSPAAGDMAKAGEEYTVEFDYNNGVGSRVDRFDIDLYMADGTGDCGTYVTSICDKESIGCKDSMGDYDVEIPEDTPAGEYSIRVGRFEDKTLFGCSGTFMVEGDDEDMSMSFRF 872
            +ANAL VV+P   + V+ADR YTVEWTG  +GRFEIDLY+C S CM+D CG+WVTALCPYG +GCPD+ GDYDI+MPEPM GTS +GYKV V +  DES++ CSD FTLIAS +AP + E  YSLTVTSP+ GD A AGE YTVE+DY NG GS  DRF +DLY+  GTGDCGTYVT++CD+ SIGC DS GDYDVEIP DTPAG YSIRVG F+D+ ++ CS TF V+  D DM++S RF
Sbjct:   16 AANALEVVSPDGGISVLADRAYTVEWTGTTTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSD-DMTISMRF 254          
BLAST of mRNA_L-elsbetiae_contig5629.13969.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 323 bits (829), Expect = 4.880e-103
Identity = 161/244 (65.98%), Postives = 191/244 (78.28%), Query Frame = 3
Query:  153 SANALTVVTPSSDLDVVADRTYTVEWTGADSG-RFEIDLYHCGSMCMEDSCGEWVTALCPYGENGCPDNEGDYDIVMPEPMMGTSGTGYKVRVMDVSDESEVDCSDAFTLIASPEAPFSSEDYS--LTVTSPAAGDMAKAGEEYTVEFDYNNGVGSRVDRFDIDLYMADGTGDCGTYVTSICDKESIGCKDSMGDYDVEIPEDTPAGEYSIRVGRFEDKTLFGCSGTFMVEG-----DDEDMSM 860
            +A+AL VVTP+    VVA R YTVEWTG  S  R+EIDLY+CGSMCMED CG+WVTALCPYGE+GCPDNEGDYDIVMPEPM GTSG+GYKVRV DV D+   DCSD F L+A  EAP + +     +TVTSP++GD A+AGEEYTVEFDY+NG+GS V RF IDLY A G+GDCGT++ ++CDK +IGCKDSMGDYDVEIPED  AG Y+IRVG FED +++GCS  F + G     DD D+ M
Sbjct:    4 AASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDSPDDGDLDM 247          
BLAST of mRNA_L-elsbetiae_contig5629.13969.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 318 bits (815), Expect = 2.940e-101
Identity = 158/238 (66.39%), Postives = 182/238 (76.47%), Query Frame = 3
Query:  153 SANALTVVTPSSDLDVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGEWVTALCPYGENGCPDNEGDYDIVMPEPMMGTSGTGYKVRVMDVSDESEVDCSDAFTLIASPEAPFSSE-DYSLTVTSPAAGDMAKAGEEYTVEFDYNNGVGSRVDRFDIDLYM-ADGTGDCGTYVTSICDKESIGCKDSMGDYDVEIPEDTPAGEYSIRVGRFEDKTLFGCSGTFMVEGDDEDMSM 860
            +ANAL VV+P++ + V+ADRTYTVEWTG    RFEIDLY+CGS CMED CG+WVTALCPYG +GCPD +GDYDIVMPEPM GTS +GYKV V D +DES + CS  FTL+AS +AP + E  YSLTVTSP+ GD A AG  YTVE+DY NG+GS  DRF IDLY    GTGDCGTYV ++CDK SIGC DS GDYDVEIP DTPAG YS+RVG F D  +F CS  F +  D  DMSM
Sbjct:   16 AANALEVVSPAAGISVIADRTYTVEWTGTSDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTDMSM 252          
BLAST of mRNA_L-elsbetiae_contig5629.13969.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 314 bits (804), Expect = 1.210e-99
Identity = 158/241 (65.56%), Postives = 192/241 (79.67%), Query Frame = 3
Query:  153 SANALTVVTPSSDLDVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGEWVTALCPYGENGCPDNEGDYDIVMPEPMMGTSGTGYKVRVMDVSDESEVDCSDAFTLIASPEAPFSSEDYS-LTVTSPAAGDMAKAGEEYTVEFDYNNGVGSRVDRFDIDLYMADGTGDCGTYVTSICDKESIGCKDSMGDYDVEIPEDTPAGEYSIRVGRFEDKTLFGCSGTFMVEGDDEDMSMSFRF 872
            +ANAL VV+P++   VVAD  YTVEWTGA SGR++IDLY+CGS+CMED CG+WVTALCPYG++GCPD +GDYD+VMPEPM GTS +GYKV V D SDES+  CS  FTLIAS EAP +++  + ++VTSP+ GD A AG EYTVEFDY+NG+GS V+RF IDLY + G+GDCGTYVT+ICDK SIGCKDS GDYDV IP  T +G YSIRVG FED  ++GCS +F + G +   SMS RF
Sbjct:   16 AANALEVVSPAAGDMVVADSAYTVEWTGATSGRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGE---SMSVRF 252          
BLAST of mRNA_L-elsbetiae_contig5629.13969.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 7.850e-91
Identity = 153/227 (67.40%), Postives = 172/227 (75.77%), Query Frame = 3
Query:  132 ACAALSASANALTVVTPSSDLDVVADRTYTVEWTGADS-GRFEIDLYHCGSMCMEDSCGEWVTALCPYGENGCPDNEGDYDIVMPEPMMGTSGTGYKVRVMDVSDESEVDCSDAFTLIASPEAPFSSEDY--SLTVTSPAAGDMAKAGEEYTVEFDYNNGVGSRVDRFDIDLYMADGTGDCGTYVTSICDKESIGCKDS----MGDYDVEIPEDTPAGEYSIRVGRF 791
            AC  L A ANAL V TPS  L V+ADRTYTVEWTG  S  RFEIDLY+CGSMCMED CG+WVTALCPYGE+GCPDNEGDYDIVMPEPM GTSG+GYKVRV D+ DE + DCSD F LIAS EAP   ++   +L VTSPA+GD+A    EYTVEFDY+NGVGSRVDRF IDLY ADG GDCGTYV SICDK +IGCKDS     G + V+       G +S+ V R+
Sbjct:   11 ACGMLGA-ANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSNPVRRGRWRVQDSGGPLRGRFSLLVLRY 236          
BLAST of mRNA_L-elsbetiae_contig5629.13969.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 2.270e-82
Identity = 136/237 (57.38%), Postives = 164/237 (69.20%), Query Frame = 3
Query:  159 NALTVVTPSSDLDVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGEWVTALCPYGENGCPDNEGDYDIVMPEPMMGTSGTGYKVRVMDVSDESEVDCSDAFTLIASPEAPFSSEDYSLTVTSPAAGDMAKAGEEYTVE-FDYNNGVGSRVDRFDIDLYMADGTGDCGTYVTSICDKESIGCKDSMGDYDVEIPEDTPAGEYSIRVGRFEDKTLFGCSGTFMVEGDDEDMSMSF 866
            NAL V +P++   +VA  + TVEWTG  SGRF+IDLY+CGS+CMED CG+WVTALCPYG++GCPD +GDYD+VMPEPM GTS +GYKV V D SDES++ CS  FTL+AS                                 FD++NG GS V+RF IDLYM+ G+GDCGTYVTSICDK SIGCKDS GDYDV IP DT +G YSIRVG FED  +FGCS +F + G +  MS+ F
Sbjct:   18 NALEVTSPAAGDMIVAASSTTVEWTGTSSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGGESSMSVRF 253          
BLAST of mRNA_L-elsbetiae_contig5629.13969.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE)

HSP 1 Score: 271 bits (694), Expect = 4.510e-80
Identity = 133/186 (71.51%), Postives = 147/186 (79.03%), Query Frame = 3
Query:  288 MEDSCGEWVTALCPYGENGCPDNEGDYDIVMPEPMMGTSGTGYKVRVMDVSDESEVDCSDAFTLIASPEAPF--SSEDYSLTVTSPAAGDMAKAGEEYTVEFDYNNGVGSRVDRFDIDLYMADGTGDCGTYVTSICDKESIGCKDSMGDYDVEIPEDTPAGEYSIRVGRFEDKTLFGCSGTFMVEG 839
            +ED CGEWVTALCPYG  GCPDNEGDYDIVMPEPM GTSG+GYKVRV DV    + DCSD F L+AS EAP     +   L VTSP+AGD A+AG EYTVEFDY+NGVGSRVDRF IDLY   GTGDCGT+V ++CDKE+IGCKDSMGDYDVEIPE    G YSIRVGRFED  L+GCSG F + G
Sbjct:   12 VEDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVG 197          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5629.13969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FYL2_ECTSI6.680e-13380.24EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
A0A6H5JRG9_9PHAE9.690e-11670.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFT9_9PHAE3.920e-10666.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY62_9PHAE1.510e-10465.98GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
D8LI46_ECTSI4.880e-10365.98EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G3F0_ECTSI2.940e-10166.39EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G3E8_ECTSI1.210e-9965.56Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
D7FH21_ECTSI7.850e-9167.40Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KP11_9PHAE2.270e-8257.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEJ8_9PHAE4.510e-8071.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5629contigL-elsbetiae_contig5629:7834..11533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSecreted protein similar to EsV-1-163
Ec32 orthologEc-26_002660.1
Exons6
Model size1965
Cds size771
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5629.13969.1prot_L-elsbetiae_contig5629.13969.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5629 8924..11429 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816598.718112-UTR-L-elsbetiae_contig5629:7833..89231622816598.718112-UTR-L-elsbetiae_contig5629:7833..8923Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5629 7834..8923 -
1691683674.9683845-UTR-L-elsbetiae_contig5629:7833..89231691683674.9683845-UTR-L-elsbetiae_contig5629:7833..8923Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5629 7834..8923 -
1622816598.7948174-UTR-L-elsbetiae_contig5629:11429..115331622816598.7948174-UTR-L-elsbetiae_contig5629:11429..11533Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5629 11430..11533 -
1691683675.057058-UTR-L-elsbetiae_contig5629:11429..115331691683675.057058-UTR-L-elsbetiae_contig5629:11429..11533Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5629 11430..11533 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816598.7287207-CDS-L-elsbetiae_contig5629:8923..90781622816598.7287207-CDS-L-elsbetiae_contig5629:8923..9078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 8924..9078 -
1691683674.9788904-CDS-L-elsbetiae_contig5629:8923..90781691683674.9788904-CDS-L-elsbetiae_contig5629:8923..9078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 8924..9078 -
1622816598.7387776-CDS-L-elsbetiae_contig5629:9315..94511622816598.7387776-CDS-L-elsbetiae_contig5629:9315..9451Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 9316..9451 -
1691683674.9909592-CDS-L-elsbetiae_contig5629:9315..94511691683674.9909592-CDS-L-elsbetiae_contig5629:9315..9451Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 9316..9451 -
1622816598.7488708-CDS-L-elsbetiae_contig5629:9634..97991622816598.7488708-CDS-L-elsbetiae_contig5629:9634..9799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 9635..9799 -
1691683675.0006819-CDS-L-elsbetiae_contig5629:9634..97991691683675.0006819-CDS-L-elsbetiae_contig5629:9634..9799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 9635..9799 -
1622816598.7618535-CDS-L-elsbetiae_contig5629:10115..102411622816598.7618535-CDS-L-elsbetiae_contig5629:10115..10241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 10116..10241 -
1691683675.0103376-CDS-L-elsbetiae_contig5629:10115..102411691683675.0103376-CDS-L-elsbetiae_contig5629:10115..10241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 10116..10241 -
1622816598.772864-CDS-L-elsbetiae_contig5629:10746..108281622816598.772864-CDS-L-elsbetiae_contig5629:10746..10828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 10747..10828 -
1691683675.0232108-CDS-L-elsbetiae_contig5629:10746..108281691683675.0232108-CDS-L-elsbetiae_contig5629:10746..10828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 10747..10828 -
1622816598.7831254-CDS-L-elsbetiae_contig5629:11322..114291622816598.7831254-CDS-L-elsbetiae_contig5629:11322..11429Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 11323..11429 -
1691683675.040965-CDS-L-elsbetiae_contig5629:11322..114291691683675.040965-CDS-L-elsbetiae_contig5629:11322..11429Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5629 11323..11429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5629.13969.1

>prot_L-elsbetiae_contig5629.13969.1 ID=prot_L-elsbetiae_contig5629.13969.1|Name=mRNA_L-elsbetiae_contig5629.13969.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=257bp
MARTAFVALACAALSASANALTVVTPSSDLDVVADRTYTVEWTGADSGRF
EIDLYHCGSMCMEDSCGEWVTALCPYGENGCPDNEGDYDIVMPEPMMGTS
GTGYKVRVMDVSDESEVDCSDAFTLIASPEAPFSSEDYSLTVTSPAAGDM
AKAGEEYTVEFDYNNGVGSRVDRFDIDLYMADGTGDCGTYVTSICDKESI
GCKDSMGDYDVEIPEDTPAGEYSIRVGRFEDKTLFGCSGTFMVEGDDEDM
SMSFRF*
back to top

mRNA from alignment at L-elsbetiae_contig5629:7834..11533-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5629.13969.1 ID=mRNA_L-elsbetiae_contig5629.13969.1|Name=mRNA_L-elsbetiae_contig5629.13969.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3700bp|location=Sequence derived from alignment at L-elsbetiae_contig5629:7834..11533- (Laminarionema elsbetiae ELsaHSoW15)
TCCACATCTCACGAAGACTTTCGTTTCAAACGACAAACCTTCCACGAACG CTACTCCAAAGGCTGCCCAAGACACCTTCTTCACCCTTCTTCAAAATTTT CAAGATGGCTCGCACTGCTTTCGTCGCTCTCGCCTGCGCCGCTCTCAGCG CCTCCGCCAACGCCTTGACCGTCGTGACCCCCTCTTCCGACCTGGATGTC GTCGCTGACCGGTGAGTCAGTAGCCCTTCGAACGTGATTGTCATGGCCGC CCGCGTAGGCTCGACTGCTGTGTCTAGCACGTGTGTACTTAGCGTAGAGT GTCTAGCGCGTGCCTCCTCAAAACTTGTCTATTGAGATAGTTTCCAATAG TTTTTAGTTTCCAGGTATGGCAAAAGGAGAGGGCGCGTGTAAGAATCGAA TCTACATACGGACCGGGTCTGTGAGAGCCAGCAGCCACCTGAGCCCGCCC ATCCAGCACGCCCCCTTGTCAATGGCGACATCCCAGTCACCAACTCGGCG AAAGTCTCATCATTGATCCCGCGGCGCGGGTATCAACGTGCGCGTTATCC GTAAGGACGTATTCTCGGGGATGCCGAGACAACTTCTCAAGCTCTCGAAG CTTGTCGGCCTTTTTTGGGAACTGAAAAAATATGTAAAAAAGTGCGAATT TCCCCGATCACCTCTCACACGTGTGCCTCCCGCCCGCTGGTCTCAAATCC TGCAGCACCTACACTGTGGAGTGGACCGGAGCTGACTCTGGACGTTTCGA GATCGACCTGTACCACTGCGGATCCATGTGCATGGAGGTGAGGCGATGGA AAAATTGTACTGATTTTCAGGTTGTCGCCGTCGCCACGTCGCGCTTTTTG CGCTTCGAGGCTGTGAATTGGCGCCCTGCCCTGATCTTACCTCTTGACAA GCGGCGGGGATGCGTCACACTCACGTCGACTCGTATTGCTGGTGTGGGGT AGCGATTGCCAGTCAACTGGTGTGCTAGACGCCTTCTCGATCACGACGTC ATGCAGACAAAAAGAGCAGCTGGCCTTTTTATTACAAAAAAAGCAGTGAC TGCGAGGGGCCGGCTGAAACCGCACACAGCTACCCTACTAGCTGTAGGTT TCAATCTCAATCCCGTAGATGTCTTGAAGGAGCAGCGCTGATAAGGGACC AAACATGCGTGATAGTAACTGAGGCGTCGCGCGTGTGCGCGAAAAGGCGT GGATTTGCGTCAGTCTCGTACATTCTGTTTCTCAAAAAATATGTTGTCCA CCCGCGTGTCGTCATATTTTCATACTTTCCCCCGTCTCACAGGACTCCTG CGGTGAGTGGGTGACCGCCCTCTGCCCCTACGGCGAGAACGGCTGCCCCG ACAACGAGGGTGACTACGACATCGTCATGCCCGAGCCCATGATGGGCACA TCCGGCACTGGCTACAAGGTGTGGACGCTCAGCTCTACCTTACACGACAA ATCGTGTTCGAAACAATTTGTCCCCATCTGGCGCCCCCTGACTACTGTGT GTGTGTGTGTGTGTGTCCTTCCCATTCATTTTGGCGACAGTTCCCCCAAG TGGAGACGTGTACTACACCTTGCGGTGTTCTTTTTTTTGCCCCACCTTCC TCCTGCGGTTCTTGCCTTGGGTTTTATCGCGAGAAGGGTTCAGCTGTACC TTTCCCTCGTCGACGTGACCACGTCGAAGTTTGACTGTACGCACGAGTAA TAAACTGCCCCACCTTATGATACGTCTGCACTAGGTCCGCGTGATGGACG TGTCTGACGAGAGCGAAGTGGACTGCTCCGACGCATTCACTCTCATCGCC TCCCCGGAGGCACCGTTCTCCTCGGAGGACTACTCGCTCACCGTGACGAG CCCCGCTGCCGGCGACATGGCGAAGGCCGGCGAGGAGTACACCGTCGAGG TGAGTAAGCGGCGTAGTCTTGCCGTTGTAAGAGCAGAAGATGATGTATTA TCCTGCGATATGGATGTAAGAGCATCGGATAAATTGTGTACACTATTATG TAAGCGTTTCTTCTCAGCCGAAGTCAAGTTTTGACTTTTTTCGCCCTGCA TATCTTCTCTCTGTCATTGCCTCTCCACCCAGTTCGACTACAACAACGGT GTCGGCTCCAGGGTGGACCGGTTCGACATCGACCTCTACATGGCGGATGG CACCGGCGACTGCGGCACCTACGTGACTTCCATCTGCGACAAGGAGTCCA TCGGCTGCAAGGACTCCAGTGAGTAGCGATACCTGCACAGACCGCCTATT TTTACGCCGTATTATACCTATACCCGAAGTTGAAGCCGTTGCGACACGCC AGCGTCACTTGTGATAATCGAATGGGGACCACAGACAGGCCGATATCCTC TGTCCATCTGACGGAGATCGCAAATCGAAAAAAAAACTGCTGAAGATGTA TGAACCTACTTAACAAAGCACGCCCACTCCCATTGACGGATTTTACCAAT TGCAGTGGGCGACTACGACGTGGAAATCCCCGAGGACACCCCCGCGGGAG AGTACTCTATCCGTGTGGGCCGCTTTGAGGACAAGACATTGTTCGGCTGC TCTGGCACTTTCATGGTGGAGGGAGATGACGAGGACATGTCGATGTCCTT CCGTTTCTAAGCGCATGACGCAATCGGTAGAAATACTCGTCCCGGTCCAC CATAGTGTATATCCCCGTTGACGCGCTTTCCAGCGAGACAGTCCAGTAGC ATGTAGTTATTTTTCGCGGCTGTTGTTGCCCACACGAAGGTTTATCTTTG GTTGTCAAATGTACTGAAGGGAAGGTTCTGCCCTGTACTAGACTGTTTTT TGCGTCGCCCCCCATCCTGGCTGGGTTGAGCCGTAGTCTTGTTCTCACGG TTGAAATCCTAGCGTCGACCCTCCCTTCTCCGAGTCTGGCGCGTTCCACG CAGCGATTCTCGAGACGTGTTGTACTCTTTTTTGTGTATTTCTACTCGGT CGTTTCAGAAATTCAAAAACGAGTGATCCATTCTTGCACGTTTTCCCTTT GTAAATTAGATCTGTAGTGTACCTTAGTGGGCTTGCGCTATTTTTTCTGG GGTAGCGAGCCTTGTGTTTTTCAAGTGTTCATCAGGGAGGTTGGTACTTT TACATCGTCGCGTCGCGCCACATGTTTCTTTTAACGGTCGCGCGCGAGCT TCAATTTGTGATGTCTTTTTTCGCTGTTGCCCCCTCCCCCTCCCTTTGCG AAGGGGAGCGCCGAGGCAAAATATTGCTTTTTGTCTTGTGGTAGTACAAG GGTTGTTCTGTTACAAGCGATTCCACCCCGCGAGTATTGGTGGTTGTACG ACGTAAGAAGCGAATATTATCGTTGATGTTGATCCGTCGCCATTCGAGAT GCGCGGTAACGGTTTTCCGTTTGGTCTTTCCGTTACCATGGTTTCGGGTC TTTACGGCCGCCTTTTTTTACAAGTGCCTCCAATAAGTGAGCAACAGAAA AATGATACAAGCCAGGAGCTATCCCAAAGCTAACTGCACACTGCTCACAC AGGTTTTTATGGGGGCGAAAAGTTGAGAGAAAAGGAAAAGTTTCTGAACT TTCCTCTCCAACTTTCTCATGTGCGCTCTTTATGGGAGCAAACAGTTGCG GTAAAGGTTGTGAAACTTTTGGTTTGTCAAACTTTTGCCCGGTTGCGAAG AAAAGTTTGCAAACTTTTGATGAGCAAATGTTGCGAAATAGTTGAGCGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5629:7834..11533-

>mRNA_L-elsbetiae_contig5629.13969.1 ID=mRNA_L-elsbetiae_contig5629.13969.1|Name=mRNA_L-elsbetiae_contig5629.13969.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1542bp|location=Sequence derived from alignment at L-elsbetiae_contig5629:7834..11533- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCGCACTGCTTTCGTCGCTCTCGCCTGCGCCGCTCTCAGCGCCTC
CGCCAACGCCTTGACCGTCGTGACCCCCTCTTCCGACCTGGATGTCGTCG
CTGACCGATGGCTCGCACTGCTTTCGTCGCTCTCGCCTGCGCCGCTCTCA
GCGCCTCCGCCAACGCCTTGACCGTCGTGACCCCCTCTTCCGACCTGGAT
GTCGTCGCTGACCGCACCTACACTGTGGAGTGGACCGGAGCTGACTCTGG
ACGTTTCGAGATCGACCTGTACCACTGCGGATCCATGTGCATGGAGCACC
TACACTGTGGAGTGGACCGGAGCTGACTCTGGACGTTTCGAGATCGACCT
GTACCACTGCGGATCCATGTGCATGGAGGACTCCTGCGGTGAGTGGGTGA
CCGCCCTCTGCCCCTACGGCGAGAACGGCTGCCCCGACAACGAGGGTGAC
TACGACATCGTCATGCCCGAGCCCATGATGGGCACATCCGGCACTGGCTA
CAAGGACTCCTGCGGTGAGTGGGTGACCGCCCTCTGCCCCTACGGCGAGA
ACGGCTGCCCCGACAACGAGGGTGACTACGACATCGTCATGCCCGAGCCC
ATGATGGGCACATCCGGCACTGGCTACAAGGTCCGCGTGATGGACGTGTC
TGACGAGAGCGAAGTGGACTGCTCCGACGCATTCACTCTCATCGCCTCCC
CGGAGGCACCGTTCTCCTCGGAGGACTACTCGCTCACCGTGACGAGCCCC
GCTGCCGGCGACATGGCGAAGGCCGGCGAGGAGTACACCGTCGAGGTCCG
CGTGATGGACGTGTCTGACGAGAGCGAAGTGGACTGCTCCGACGCATTCA
CTCTCATCGCCTCCCCGGAGGCACCGTTCTCCTCGGAGGACTACTCGCTC
ACCGTGACGAGCCCCGCTGCCGGCGACATGGCGAAGGCCGGCGAGGAGTA
CACCGTCGAGTTCGACTACAACAACGGTGTCGGCTCCAGGGTGGACCGGT
TCGACATCGACCTCTACATGGCGGATGGCACCGGCGACTGCGGCACCTAC
GTGACTTCCATCTGCGACAAGGAGTCCATCGGCTGCAAGGACTCCATTCG
ACTACAACAACGGTGTCGGCTCCAGGGTGGACCGGTTCGACATCGACCTC
TACATGGCGGATGGCACCGGCGACTGCGGCACCTACGTGACTTCCATCTG
CGACAAGGAGTCCATCGGCTGCAAGGACTCCATGGGCGACTACGACGTGG
AAATCCCCGAGGACACCCCCGCGGGAGAGTACTCTATCCGTGTGGGCCGC
TTTGAGGACAAGACATTGTTCGGCTGCTCTGGCACTTTCATGGTGGAGGG
AGATGACGAGGACATGTCGATGTCCTTCCGTTTCTAATGGGCGACTACGA
CGTGGAAATCCCCGAGGACACCCCCGCGGGAGAGTACTCTATCCGTGTGG
GCCGCTTTGAGGACAAGACATTGTTCGGCTGCTCTGGCACTTTCATGGTG
GAGGGAGATGACGAGGACATGTCGATGTCCTTCCGTTTCTAA
back to top