mRNA_L-elsbetiae_contig5621.13960.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5621.13960.1
Unique NamemRNA_L-elsbetiae_contig5621.13960.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5621.13960.1 vs. uniprot
Match: D7G3T7_ECTSI (Peptidase A1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T7_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.740e-32
Identity = 56/81 (69.14%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:  472 RLPLRSSIGTHFVYAHVGTPPQRVRLIIDTGSYTTAFPCVGCSKCRPGSTAPFWDPALSETVSAVPCEGCRGGYKCSKFEP 714
            R PLR S GTHFVYAHVGTPPQRV LI+DTGS+T AFPCVGC KCRP S  PFWDP  S T + + C+ C G Y CS+FEP
Sbjct:   82 RFPLRWSEGTHFVYAHVGTPPQRVSLIVDTGSFTLAFPCVGCDKCRPRSRTPFWDPGASATAAELSCDECHGDYTCSEFEP 162
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BLAST of mRNA_L-elsbetiae_contig5621.13960.1 vs. uniprot
Match: A0A6H5LN99_9PHAE (Peptidase A1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN99_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.140e-30
Identity = 55/81 (67.90%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:  472 RLPLRSSIGTHFVYAHVGTPPQRVRLIIDTGSYTTAFPCVGCSKCRPGSTAPFWDPALSETVSAVPCEGCRGGYKCSKFEP 714
            R+PLR S GTHFVYAHVGTPPQRV LI+DTGS+  AFPCVGC KCRP S  PFWDP  S T + + C+ C G Y CS+FEP
Sbjct:  151 RIPLRWSEGTHFVYAHVGTPPQRVSLILDTGSFMLAFPCVGCDKCRPRSRTPFWDPGASATAAELSCDECHGDYTCSEFEP 231
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BLAST of mRNA_L-elsbetiae_contig5621.13960.1 vs. uniprot
Match: A0A7S2FBW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FBW1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 7.800e-17
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:  457 ADIATRLPLRSSIGTHFVYAHVGTPPQRVRLIIDTGSYTTAFPCVGCSKCRPGSTAPFWDPALSETVSAVPCEGCR 684
            A  A+  PL   IGTH+V+ +VGTPPQRV +I+DTGS+ TAFPC GC  C    T P++DP  S T   V C  C+
Sbjct:   26 APAASEAPLWEGIGTHYVHIYVGTPPQRVSVIVDTGSHHTAFPCDGCKNCGK-HTDPYFDPKKSSTSQTVGCSQCK 100
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BLAST of mRNA_L-elsbetiae_contig5621.13960.1 vs. uniprot
Match: A0A6H5JRT4_9PHAE (Peptidase A1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRT4_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.850e-16
Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:  478 PLRSSIGTHFVYAHVGTPPQRVRLIIDTGSYTTAFPCVGCSKCRPGSTAPFWDPALSETVSAVPCEGCRGGYKCSK 705
            PL    GTHF Y + GTPPQRV +IIDTGS+ TAFPC GC  C    T P WD + S +   V CE C G ++C +
Sbjct:  118 PLFPGWGTHFAYVYAGTPPQRVSVIIDTGSHFTAFPCSGCKNCG-SHTDPHWDQSKSTSSHIVTCEDCHGSFRCQR 192
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BLAST of mRNA_L-elsbetiae_contig5621.13960.1 vs. uniprot
Match: A0A7S2WCI1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCI1_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.070e-16
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:  475 LPLRSSIGTHFVYAHVGTPPQRVRLIIDTGSYTTAFPCVGCSKCRPGSTAPFWDPALSETVSAVPCEGCRGGYKCSK 705
            +PL   IGTH+ + +VGTPPQRV +I+DTGS+ TAFPC GC  C    T P + P+ S T S +PC  C+ G +C K
Sbjct:   78 IPLFEGIGTHYAFIYVGTPPQRVSVIMDTGSHLTAFPCEGCKTCG-SHTDPHFKPSGSSTNSYLPCNACKAGARCVK 153
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BLAST of mRNA_L-elsbetiae_contig5621.13960.1 vs. uniprot
Match: A0A836CAB1_9STRA (Aspartic peptidase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAB1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 7.690e-16
Identity = 36/72 (50.00%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:  496 GTHFVYAHVGTPPQRVRLIIDTGSYTTAFPCVGCSKCRPGSTAPFWDPALSETVSAVPCEGCRGGYKCSKFE 711
            GTH  Y +VGTPPQRV +I+DTGS  TAFPC GC  C      P+WD + S T     C+ C G Y C+  E
Sbjct:    3 GTHVAYVYVGTPPQRVSVILDTGSSNTAFPCTGCQGCGQHED-PYWDRSASSTAQVSSCQQCVGDYTCTAAE 73
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BLAST of mRNA_L-elsbetiae_contig5621.13960.1 vs. uniprot
Match: A0A835ZJF3_9STRA (Aspartic peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJF3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.760e-15
Identity = 37/68 (54.41%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:  496 GTHFVYAHVGTPPQRVRLIIDTGSYTTAFPCVGCSKCRPGSTAPFWDPALSETVSAVPCEGCRGGYKC 699
            GTH  Y +VGTPPQRV +IIDTGS+ TAFPC GC  C    T P+WD A S T     C  C+G + C
Sbjct:    8 GTHIAYLYVGTPPQRVSVIIDTGSHLTAFPCKGCQACGK-HTDPYWDFAASSTAKITTCAACKGTFTC 74
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BLAST of mRNA_L-elsbetiae_contig5621.13960.1 vs. uniprot
Match: A0A835ZHP7_9STRA (Aspartic peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHP7_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.680e-15
Identity = 37/75 (49.33%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:  475 LPLRSSIGTHFVYAHVGTPPQRVRLIIDTGSYTTAFPCVGCSKCRPGSTAPFWDPALSETVSAVPCEGCRGGYKC 699
            +PL    GTH  Y +VGTPPQRV +I+DTGS+ TAFPC GC  C    T  +WD  LS T +   C  C G + C
Sbjct:    6 VPLIPGYGTHIAYVYVGTPPQRVSVILDTGSHFTAFPCKGCKACG-DHTDSYWDFDLSSTATLTKCPDCHGNFNC 79
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BLAST of mRNA_L-elsbetiae_contig5621.13960.1 vs. uniprot
Match: F0YC49_AURAN (Peptidase A1 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC49_AURAN)

HSP 1 Score: 79.0 bits (193), Expect = 1.540e-14
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:  493 IGTHFVYAHVGTPPQRVRLIIDTGSYTTAFPCVGCSKCRPGSTAPFWDPALSETVSAVPCEGCRGGYKC 699
            IGTH+ + +VGTPPQRV +I+DTGS+ TAFPC GC  C    T P++DP  S T+  + C  C    +C
Sbjct:    3 IGTHYAHVYVGTPPQRVSVIVDTGSHHTAFPCSGCKSCGK-HTDPYFDPDKSSTLRRLGCSDCVAAARC 70
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BLAST of mRNA_L-elsbetiae_contig5621.13960.1 vs. uniprot
Match: A0A4D9CR18_9STRA (Peptidase A1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CR18_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.440e-13
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:  475 LPLRSSIGTHFVYAHVGTPPQRVRLIIDTGSYTTAFPCVGCSKCRPGSTAPFWDPALSETVSAVPCEGCRGGYKC 699
            LPL +  GTH+ +  VGTP QRV +I+DTGS+ TAFPC GC  C    T P +D   S+T  A+ C  C+    C
Sbjct:  102 LPLHAGYGTHYAFVFVGTPAQRVSVILDTGSHWTAFPCTGCQMCGDDHTDPVFDVLKSDTFHALDCSECKFSGHC 176
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5621.13960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3T7_ECTSI1.740e-3269.14Peptidase A1 domain-containing protein n=1 Tax=Ect... [more]
A0A6H5LN99_9PHAE2.140e-3067.90Peptidase A1 domain-containing protein n=1 Tax=Ect... [more]
A0A7S2FBW1_9STRA7.800e-1751.32Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A6H5JRT4_9PHAE1.850e-1651.32Peptidase A1 domain-containing protein n=2 Tax=Ect... [more]
A0A7S2WCI1_9STRA2.070e-1650.65Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CAB1_9STRA7.690e-1650.00Aspartic peptidase domain-containing protein (Frag... [more]
A0A835ZJF3_9STRA3.760e-1554.41Aspartic peptidase domain-containing protein n=1 T... [more]
A0A835ZHP7_9STRA5.680e-1549.33Aspartic peptidase domain-containing protein n=1 T... [more]
F0YC49_AURAN1.540e-1449.28Peptidase A1 domain-containing protein (Fragment) ... [more]
A0A4D9CR18_9STRA1.440e-1346.67Peptidase A1 domain-containing protein n=2 Tax=Mon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5621contigL-elsbetiae_contig5621:5379..6823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue3.4e-28
Seed eggNOG ortholog2880.D7G3T7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG1339@1,KOG1339@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAspartic peptidase
Ec32 orthologEc-00_006990.1
Exons2
Model size719
Cds size717
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816597.6177704-CDS-L-elsbetiae_contig5621:5378..60731622816597.6177704-CDS-L-elsbetiae_contig5621:5378..6073Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5621 5379..6073 +
1691683674.1588802-CDS-L-elsbetiae_contig5621:5378..60731691683674.1588802-CDS-L-elsbetiae_contig5621:5378..6073Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5621 5379..6073 +
1622816597.6276188-CDS-L-elsbetiae_contig5621:6799..68211622816597.6276188-CDS-L-elsbetiae_contig5621:6799..6821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5621 6800..6821 +
1691683674.1723118-CDS-L-elsbetiae_contig5621:6799..68211691683674.1723118-CDS-L-elsbetiae_contig5621:6799..6821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5621 6800..6821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5621.13960.1prot_L-elsbetiae_contig5621.13960.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5621 5379..6821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5621.13960.1

>prot_L-elsbetiae_contig5621.13960.1 ID=prot_L-elsbetiae_contig5621.13960.1|Name=mRNA_L-elsbetiae_contig5621.13960.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=239bp
EELREPPPPPPPPRAARRFLSSENGEPMMSLPLERILGQDGEGGGGGGNL
DAFWEFSHGHHHSFRTRQQELLLEQQRQQQQRLVLDRSRTTPHPRANPVA
PRRTRPTTITPLPTAAEAAAAAAAAERSRRRRLDGVDALATAAATTNSTA
AAADIATRLPLRSSIGTHFVYAHVGTPPQRVRLIIDTGSYTTAFPCVGCS
KCRPGSTAPFWDPALSETVSAVPCEGCRGGYKCSKFEPT
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mRNA from alignment at L-elsbetiae_contig5621:5379..6823+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5621.13960.1 ID=mRNA_L-elsbetiae_contig5621.13960.1|Name=mRNA_L-elsbetiae_contig5621.13960.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1445bp|location=Sequence derived from alignment at L-elsbetiae_contig5621:5379..6823+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGAGCTTCGGGAACCGCCGCCGCCGCCGCCGCCGCCGCGGGCTGCTAG
ACGTTTCCTTTCCTCCGAGAACGGCGAGCCCATGATGTCACTCCCCCTGG
AGCGAATCCTCGGGCAGGACGGGGAGGGCGGCGGTGGCGGGGGAAACTTG
GACGCCTTCTGGGAGTTCAGCCACGGCCACCACCACAGCTTCCGGACACG
GCAGCAGGAGCTCCTGCTGGAGCAGCAGCGGCAGCAGCAGCAGCGGCTGG
TCCTGGACCGATCGAGAACAACACCGCACCCCCGCGCCAACCCCGTGGCA
CCAAGACGGACGAGACCGACGACGATAACACCGCTACCGACAGCAGCAGA
AGCAGCAGCAGCGGCGGCGGCGGCGGAAAGGAGCAGGAGAAGACGGCTCG
ACGGAGTCGACGCCCTCGCCACCGCCGCCGCCACCACTAACTCCACCGCC
GCCGCCGCCGACATCGCCACCCGCCTCCCCCTGCGCTCAAGCATCGGGAC
CCACTTCGTGTACGCCCACGTGGGCACGCCGCCGCAGAGGGTCAGGCTCA
TCATCGACACGGGGAGCTACACGACCGCCTTCCCCTGCGTCGGGTGCAGC
AAGTGCCGCCCGGGCTCGACGGCGCCGTTCTGGGACCCGGCCCTGTCCGA
AACGGTGTCGGCCGTGCCCTGCGAGGGCTGCAGAGGGGGTTACAAGTGAG
TTTTTTTTTTTTTTAAGACACACACACACACACACACACAACAAAAAATG
ATTAAATGGAGCCTGACCAACAGGTTGTTCGGTTCTGAAAAAAGGTCGGT
CCTCCCCAGGGTATTTTTTATGCACCATCAAAAACAACATATGTAGACCA
CGAGTATACATTGCCGTTAGGATATGCAAGGGGCCTCCCGGATCGCAAGG
GCTGGCACCATAGCTACAAAAAATCGATAGGCCCCGAATCAAGGGAGGGG
GGGGGGGGGCTTATTATATAGAAGTAGGATTTAGAATGGTCGTACGTGTG
GCGCTTGTCACCACCCCCCCCTCCTCCAATAAATCCGAGGGTCGGTGAGT
CCTGGCGACGCCATATAGGGTCCTGACGACGCCATCCACACTAATTCCTA
TACAAAAAAAAACATCGATAAGCCCATAATTTAGGGGGGGGGGGCTGTGG
TGCCTACCCTGCATTCCGGGAGGCCCCTTGGGATATGCGGTAGGGGGCTC
CGTGGTGATATGTAGTAGTTCCCTGGTATTTCATACTGCGTCACCCCTGC
TGGGACCCAATGATAATATAACCTATCTTCATCTCCCGATAAACCTGCCC
TCCTCCCTCCCTGTGCTACAAGTGCTGCGCTACAAATGCTGTGCTATTTA
TACAAATGCTGTGCCACGAATGCTGTGCCGCGCTGTGTTGTGTTGTGTTT
GTGTTTTGTGTTGTGCCGCAGGTGCTCCAAATTCGAGCCCACGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5621:5379..6823+

>mRNA_L-elsbetiae_contig5621.13960.1 ID=mRNA_L-elsbetiae_contig5621.13960.1|Name=mRNA_L-elsbetiae_contig5621.13960.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1434bp|location=Sequence derived from alignment at L-elsbetiae_contig5621:5379..6823+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGAGCTTCGGGAACCGCCGCCGCCGCCGCCGCCGCCGCGGGCTGCTAG
ACGTTTCCTTTCCTCCGAGAACGGCGAGCCCATGATGTCACTCCCCCTGG
AGCGAATCCTCGGGCAGGACGGGGAGGGCGGCGGTGGCGGGGGAAACTTG
GACGCCTTCTGGGAGTTCAGCCACGGCCACCACCACAGCTTCCGGACACG
GCAGCAGGAGCTCCTGCTGGAGCAGCAGCGGCAGCAGCAGCAGCGGCTGG
TCCTGGACCGATCGAGAACAACACCGCACCCCCGCGCCAACCCCGTGGCA
CCAAGACGGACGAGACCGACGACGATAACACCGCTACCGACAGCAGCAGA
AGCAGCAGCAGCGGCGGCGGCGGCGGAAAGGAGCAGGAGAAGACGGCTCG
ACGGAGTCGACGCCCTCGCCACCGCCGCCGCCACCACTAACTCCACCGCC
GCCGCCGCCGACATCGCCACCCGCCTCCCCCTGCGCTCAAGCATCGGGAC
CCACTTCGTGTACGCCCACGTGGGCACGCCGCCGCAGAGGGTCAGGCTCA
TCATCGACACGGGGAGCTACACGACCGCCTTCCCCTGCGTCGGGTGCAGC
AAGTGCCGCCCGGGCTCGACGGCGCCGTTCTGGGACCCGGCCCTGTCCGA
AACGGTGTCGGCCGTGCCCTGCGAGGGCTGCAGAGGGGGTTACAAGAGGA
GCTTCGGGAACCGCCGCCGCCGCCGCCGCCGCCGCGGGCTGCTAGACGTT
TCCTTTCCTCCGAGAACGGCGAGCCCATGATGTCACTCCCCCTGGAGCGA
ATCCTCGGGCAGGACGGGGAGGGCGGCGGTGGCGGGGGAAACTTGGACGC
CTTCTGGGAGTTCAGCCACGGCCACCACCACAGCTTCCGGACACGGCAGC
AGGAGCTCCTGCTGGAGCAGCAGCGGCAGCAGCAGCAGCGGCTGGTCCTG
GACCGATCGAGAACAACACCGCACCCCCGCGCCAACCCCGTGGCACCAAG
ACGGACGAGACCGACGACGATAACACCGCTACCGACAGCAGCAGAAGCAG
CAGCAGCGGCGGCGGCGGCGGAAAGGAGCAGGAGAAGACGGCTCGACGGA
GTCGACGCCCTCGCCACCGCCGCCGCCACCACTAACTCCACCGCCGCCGC
CGCCGACATCGCCACCCGCCTCCCCCTGCGCTCAAGCATCGGGACCCACT
TCGTGTACGCCCACGTGGGCACGCCGCCGCAGAGGGTCAGGCTCATCATC
GACACGGGGAGCTACACGACCGCCTTCCCCTGCGTCGGGTGCAGCAAGTG
CCGCCCGGGCTCGACGGCGCCGTTCTGGGACCCGGCCCTGTCCGAAACGG
TGTCGGCCGTGCCCTGCGAGGGCTGCAGAGGGGGTTACAAGTGCTCCAAA
TTCGAGCCCACGGTGCTCCAAATTCGAGCCCACG
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